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Report for Sequence Feature Glyma.06g230400

Feature Type:gene_model
Chromosome:Gm06
Start:35855973
stop:35860099
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g230400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G53300.1AT tetratricopetide-repeat thioredoxin-like 1 JGI N/AIEA
GO:0045454GO-bp cell redox homeostasis EnsemblGenomesN/AIEA
GO:0045454GO-bp cell redox homeostasis JGI N/AIEA
GO:0005623GO-cc cell EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG0907 KOG Thioredoxin JGI N/AIEA
PTHR22904Panther TPR REPEAT CONTAINING PROTEIN JGI N/AIEA
PF00085PFAM Thioredoxin JGI N/AIEA
PF00515PFAM Tetratricopeptide repeat JGI N/AIEA

Expression Patterns of Glyma.06g230400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g230400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g33850 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g230400
>Glyma.06g230400.1 sequence-type=CDS polypeptide=Glyma.06g230400.1.p locus=Glyma.06g230400 ID=Glyma.06g230400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCACATTCCGGGAAGAAACCCGTGTCGTCCGAGTTAGGGCTCACCGAGCGGTTCCGCGACTCACTGAGTTGCTCCGACGACAACAAACCCGATTTCCGAGAACTCGATTTGAGTTCGCCGGTTTCAACATTGCGGCCACGTCAGCACCACAGTGCGCCCACCACAACGAGTAGCAGTAGCACGAGCACTAGCAGCGGCTCGACCGGGTCCGGTTCGGGTCGGAACGGAAACAATAACGCGGTTTCGAAGAGATCTCATTCTGGTGAGTTGTCTGGGTCGAGCGAGACCAATAGTCCGACCCGGGTTTCGAAACCGGGTCACCGGAGATCCAATTCGGGTCAAAGCCAGAGATCTCCTTCGTCGTCCTCCTCCGCTGTCAATTCTCCGCCGCTGAACGTTCTCCCGGCCGGGAACATCTGCCCGTCCGGAAGGGTTCTCAAGGCGGCGACCGCGGCCGTGGCGCCAAGCCGGAGCTCCAGGTCGGATGTTCTGGGCTCCGGCACGGGGAATTACGGCCACGGGAGCATAATGCGAGGTGGAAAAGGTGGCGGCGGCGGCGGCGGTGGTGGTGGTGATGTGAGGATCGCTGGCGAATCGGCGAAGGGCGTGGATCCGGAGGAGGTGAAGAGGATTGGGAATGAAGAGTATAAGAGAGGGCACTTTGTTGAGGCGTTGTGTTTGTATGATCGAGCAATTGCAATGTCTCCCGGCAATGCCGCTTACCGGAGCAACCGTGCGGCGGCGTTGACCGGTTTAGGACGGTTGCCGGAGGCGGTGAAGGCGTGTGAGGAGGCTGTGGGGTTGGATCCTAATTATGGGAGGGCGCATCAGCGCTTGGCAATGTTGTTTCTCAGGTTAGGACAGGTTGAGGATGCTAGGAAGCACCTTTGTTATCCTGGCCTGCAGCTGGATCCTGCTGAGTTGCAGAAGTTGCAAATTGTGGAAAAGCATATTAACAAATGTGGTGATGTACGGAGGATACGAGATTGGAAAGGTGTACTGAGGGAGGTTGATGCTGCTGTTGCTGCTGGAGCAGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTCTCAAGCTACACCAGATTGATGATGCTGAATCATGTATATCATGGATTCCCAAAAGCAAGCCACATCCTGGTTCCTTATCACAGGCAAGATTTTTTGGGATGTTTTCTGAGGCTTATTGCTTCTTCGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAACGCAGTTACAACTGCTGAGAAAGCTAGTCAGATTGACCCCCGAAACGTTGAAGTTGCTGTTTTGCTCAACAATGTGAGGATGGTTGCTAGAGCTCGATTGCGTGGTAATGATCTTTTTAAATCAGAAAGGTTCACTGAGGCATGCTCGGCATATGGGGAGGGTTTGAGGCTCGACCCTTCAAACTCTGTCCTCTATTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTGCAATCAAGCTTTACACATCCAACCTGATTACACTAAAGCCATTCTTCGAAGGGCTGCCTCAAATAGCAAGTTAGAAAGGTGGGAAGAAGCAGTAACAGATTATGAGCTTTTGCGGAGAGAACTACCAGATGACAATGAAGTTGCCGAAAATCTGTTTCATGCGCAAGTAGCATTAAAGAAATCACGTGGGGAAGAAGTGCATAATTTAAAGTTTGGTGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGTTTAGAGCGGCAATATCTTTACCAGGTGTTTCTGTTGTCCATTTTGAAACTGCGTCAAACTTGCAATGTAAGCAGATATCGCCATTGGTGAATACACTATGCAGTCGTAATCCATCTATTAACTTCCTCAAGGTGAATATTCAAACAAGCCCCGCAGTCGCTGCTGCTGAGAATGTTAGGGTTGTACCAACCTTCAAGATCTATAAAAATGGCAGTCAAGTGAAGGAAATTATATGTCCTAGTCATGATATGTTGGAACACTCCATTAGGCATTACAGCTTGTAG
Predicted protein sequences of Glyma.06g230400
>Glyma.06g230400.1.p sequence-type=predicted peptide transcript=Glyma.06g230400.1 locus=Glyma.06g230400 ID=Glyma.06g230400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSHSGKKPVSSELGLTERFRDSLSCSDDNKPDFRELDLSSPVSTLRPRQHHSAPTTTSSSSTSTSSGSTGSGSGRNGNNNAVSKRSHSGELSGSSETNSPTRVSKPGHRRSNSGQSQRSPSSSSSAVNSPPLNVLPAGNICPSGRVLKAATAAVAPSRSSRSDVLGSGTGNYGHGSIMRGGKGGGGGGGGGGDVRIAGESAKGVDPEEVKRIGNEEYKRGHFVEALCLYDRAIAMSPGNAAYRSNRAAALTGLGRLPEAVKACEEAVGLDPNYGRAHQRLAMLFLRLGQVEDARKHLCYPGLQLDPAELQKLQIVEKHINKCGDVRRIRDWKGVLREVDAAVAAGADSCVQLFMCRAEALLKLHQIDDAESCISWIPKSKPHPGSLSQARFFGMFSEAYCFFVRAQIEMAFGRFENAVTTAEKASQIDPRNVEVAVLLNNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALHIQPDYTKAILRRAASNSKLERWEEAVTDYELLRRELPDDNEVAENLFHAQVALKKSRGEEVHNLKFGGEVEDISGLEQFRAAISLPGVSVVHFETASNLQCKQISPLVNTLCSRNPSINFLKVNIQTSPAVAAAENVRVVPTFKIYKNGSQVKEIICPSHDMLEHSIRHYSL*






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