SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.06g221900): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.06g221900): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.06g221900

Feature Type:gene_model
Chromosome:Gm06
Start:28800270
stop:28804060
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g221900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26670.1AT Plant haem oxygenase (decyclizing) family protein JGI N/AIEA
GO:0006788GO-bp heme oxidation EnsemblGenomesN/AIEA
GO:0006788GO-bp heme oxidation JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0004392GO-mf heme oxygenase (decyclizing) activity EnsemblGenomesN/AIEA
GO:0004392GO-mf heme oxygenase (decyclizing) activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
KOG4480 KOG Heme oxygenase JGI N/AIEA
PTHR10720Panther HEME OXYGENASE JGI N/AIEA
PF01126PFAM Heme oxygenase JGI N/AIEA
PWY-5874SoyCyc9 heme degradation I Plant Metabolic Network ISS
GN7V-67718SoyCyc9-rxn heme oxygenase Plant Metabolic Network ISS

Proteins Associated with Glyma.06g221900
LocusGene SymbolProtein Name
HO3 heme oxygenase 3

Expression Patterns of Glyma.06g221900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g221900 not represented in the dataset
Glyma.06g221900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g221900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g29530 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g221900
>Glyma.06g221900.2 sequence-type=transcript locus=Glyma.06g221900 ID=Glyma.06g221900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTGCATACGAAAAGAGAAAAGTGACGCACGCACAGTTCCTAGTAGTACCGTACCGGTTCATTTGCTTCATCCACCACCACCTCATTTTTAGTGGTTTCGTGCACTCAACAAACTCTCATCCATGGCGTCATCACTAACAACAACTCTATCCCAGTCCCAATCGCTCTATATTAAGCCCCGCCTGGCGCCACGGCCTCCTCATCCCCAATTCCGCTCTCTTTTCCTAACCTCACCGGCGGTGGCGGGTGGTGTTCGTGCTGCTGTCATGCCTAGAAGGACTGCGGTTATCGTGTCGGCGGCGACGGCGGAGACGCCGAAGAAGAAGGGCGAGTCGAAAGGGTTCGTGGAAGAGATGAGGTTTGTGGCGATGAGGCTTCACACGAGGGACCAGGCCAGGGAGGGCGAGAAGGAGGTCAAGCAGCCCGAGGAGAAAGCCGTTACCAAGTGGAACCCATCCGTCGAAGGGTACCTGAAATTTCTTGTGGACAGTAAGCTCGTTTATGACACGCTGGAGAAAATCGTTCATGAGGCTCCTCATCCTTTTTTTTGTTACTTTATCCTTACTTTATCTCACAGGTTGCTGAAAAGTTACTTAACAACAAGGCATTGGAGTTCTACAAATGGGACGGTGACCTTCCCCAGTTGTTGCAGAATGTGAGGGACAAGTTGAATAAGGTTGCTGAACCTTGGACTCGGGAAGAAAAGGACCACTGTCTGGAAGAAACAGAAAAATCATTCAAGCTCTCTGGAGAGATTCTCCGTCTGATTTTATCATGATAATAGATGCCCTGTTGTCTGTGTAATTATGGGTATTAAGTGCATGGCAGAAGCCAAAAACATTACCGTATGTGAATTATTTTATTTTCAATACGCAAAGGAATAATAGAACTGATGTTTGATTAACTTGCTTTTCTCTAATGTGGCTTAGATTCCTTTGTGGCTGTGAATATAACATTATGTGTGC

>Glyma.06g221900.3 sequence-type=transcript locus=Glyma.06g221900 ID=Glyma.06g221900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTGCATACGAAAAGAGAAAAGTGACGCACGCACAGTTCCTAGTAGTACCGTACCGGTTCATTTGCTTCATCCACCACCACCTCATTTTTAGTGGTTTCGTGCACTCAACAAACTCTCATCCATGGCGTCATCACTAACAACAACTCTATCCCAGTCCCAATCGCTCTATATTAAGCCCCGCCTGGCGCCACGGCCTCCTCATCCCCAATTCCGCTCTCTTTTCCTAACCTCACCGGCGGTGGCGGGTGGTGTTCGTGCTGCTGTCATGCCTAGAAGGACTGCGGTTATCGTGTCGGCGGCGACGGCGGAGACGCCGAAGAAGAAGGGCGAGTCGAAAGGGTTCGTGGAAGAGATGAGGTTTGTGGCGATGAGGCTTCACACGAGGGACCAGGCCAGGGAGGGCGAGAAGGAGGTCAAGCAGCCCGAGGAGAAAGCCGTTACCAAGTGGAACCCATCCGTCGAAGGGTACCTGAAATTTCTTGTGGACAGTAAGCTCGTTTATGACACGCTGGAGAAAATCGTTCATGAGGCTCCTCATCCTTTTTATGCTGAATTCAGAAACACTGGATTGGAAAGGTCTGCAAGTTTGGTAGAAGATTTGGATTGGTTCAAGGAGCAAGGTTATACCATTCCTGAACCTTCATCTCCTGGTCTTACCTATGCACAATATCTTAAGGAGTTATCTGTGAAGGATCCTCAAGCATTCATTTGCCACTTTTACAACATCTACTTTGCTCATTCAGCTGGTGGTCGAATGATTGGGAAAAAGGTTGCTGAAAAGTTACTTAACAACAAGGCATTGGAGTTCTACAAATGGGACGGTGACCTTCCCCAGTTGTTGCAGAATGTGAGGGACAAGTTGAATAAGGTTGCTGAACCTTGGACTCGGGAAGAAAAGGACCACTGTCTGGAAGAAACAGAAAAATCATTCAAGCTCTCTGGAGAGATTCTCCGTCTGATTTTATCATGATAATAGATGCCCTGTTGTCTGTGTAATTATGGGTATTAAGTGCATGGCAGAAGCCAAAAACATTACCGTATGTGAATTATTTTATTTTCAATACGCAAAGGAATAATAGAACTGATGTTTGATTAACTTGCTTTTCTCTAATGTGGCTTAGATTCCTTTGTGGCTGTGAATATAACATTATGTGTGC

>Glyma.06g221900.4 sequence-type=transcript locus=Glyma.06g221900 ID=Glyma.06g221900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTGCATACGAAAAGAGAAAAGTGACGCACGCACAGTTCCTAGTAGTACCGTACCGGTTCATTTGCTTCATCCACCACCACCTCATTTTTAGTGGTTTCGTGCACTCAACAAACTCTCATCCATGGCGTCATCACTAACAACAACTCTATCCCAGTCCCAATCGCTCTATATTAAGCCCCGCCTGGCGCCACGGCCTCCTCATCCCCAATTCCGCTCTCTTTTCCTAACCTCACCGGCGGTGGCGGGTGGTGTTCGTGCTGCTGTCATGCCTAGAAGGACTGCGGTTATCGTGTCGGCGGCGACGGCGGAGACGCCGAAGAAGAAGGGCGAGTCGAAAGGGTTCGTGGAAGAGATGAGGTTTGTGGCGATGAGGCTTCACACGAGGGACCAGGCCAGGGAGGGCGAGAAGGAGGTCAAGCAGCCCGAGGAGAAAGCCGTTACCAAGTGGAACCCATCCGTCGAAGGGTACCTGAAATTTCTTGTGGACAGTAAGCTCGTTTATGACACGCTGGAGAAAATCGTTCATGAGGCTCCTCATCCTTTTTATGCTGAATTCAGAAACACTGGATTGGAAAGGTCTGCAAGTTTGGTAGAAGATTTGGATTGGTTCAAGGAGCAAGGTTATACCATTCCTGAACCTTCATCTCCTGGTCTTACCTATGCACAATATCTTAAGGAGTTATCTGTGAAGGATCCTCAAGCATTCATTTGCCACTTTTACAACATCTACTTTGCTCATTCAGCTGGTGGTCGAATGATTGGGAAAAAGGTTACCAAACACATGCATGCTTAAAGAGGTTGCTGAAAAGTTACTTAACAACAAGGCATTGGAGTTCTACAAATGGGACGGTGACCTTCCCCAGTTGTTGCAGAATGTGAGGGACAAGTTGAATAAGGTTGCTGAACCTTGGACTCGGGAAGAAAAGGACCACTGTCTGGAAGAAACAGAAAAATCATTCAAGCTCTCTGGAGAGATTCTCCGTCTGATTTTATCATGATAATAGATGCCCTGTTGTCTGTGTAATTATGGGTATTAAGTGCATGGCAGAAGCCAAAAACATTACCGTATGTGAATTATTTTATTTTCAATACGCAAAGGAATAATAGAACTGATGTTTGATTAACTTGCTTTTCTCTAATGTGGCTTAGATTCCTTTGTGGCTGTGAATATAACATTATGTGTGC
Coding sequences of Glyma.06g221900
>Glyma.06g221900.1 sequence-type=CDS polypeptide=Glyma.06g221900.1.p locus=Glyma.06g221900 ID=Glyma.06g221900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCATCACTAACAACAACTCTATCCCAGTCCCAATCGCTCTATATTAAGCCCCGCCTGGCGCCACGGCCTCCTCATCCCCAATTCCGCTCTCTTTTCCTAACCTCACCGGCGGTGGCGGGTGGTGTTCGTGCTGCTGTCATGCCTAGAAGGACTGCGGTTATCGTGTCGGCGGCGACGGCGGAGACGCCGAAGAAGAAGGGCGAGTCGAAAGGGTTCGTGGAAGAGATGAGGTTTGTGGCGATGAGGCTTCACACGAGGGACCAGGCCAGGGAGGGCGAGAAGGAGGTCAAGCAGCCCGAGGAGAAAGCCGTTACCAAGTGGAACCCATCCGTCGAAGGGTACCTGAAATTTCTTGTGGACAGTAAGCTCGTTTATGACACGCTGGAGAAAATCGTTCATGAGGCTCCTCATCCTTTTTATGCTGAATTCAGAAACACTGGATTGGAAAGGTCTGCAAGTTTGGTAGAAGATTTGGATTGGTTCAAGGAGCAAGGTTATACCATTCCTGAACCTTCATCTCCTGGTCTTACCTATGCACAATATCTTAAGGAGTTATCTGTGAAGGATCCTCAAGCATTCATTTGCCACTTTTACAACATCTACTTTGCTCATTCAGCTGGTGGTCGAATGATTGGGAAAAAGGTTGCTGAAAAGTTACTTAACAACAAGGCATTGGAGTTCTACAAATGGGACGGTGACCTTCCCCAGTTGTTGCAGAATGTGAGGGACAAGTTGAATAAGGTTGCTGAACCTTGGACTCGGGAAGAAAAGGACCACTGTCTGGAAGAAACAGAAAAATCATTCAAGCTCTCTGGAGAGATTCTCCGTCTGATTTTATCATGA

>Glyma.06g221900.2 sequence-type=CDS polypeptide=Glyma.06g221900.2.p locus=Glyma.06g221900 ID=Glyma.06g221900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCATCACTAACAACAACTCTATCCCAGTCCCAATCGCTCTATATTAAGCCCCGCCTGGCGCCACGGCCTCCTCATCCCCAATTCCGCTCTCTTTTCCTAACCTCACCGGCGGTGGCGGGTGGTGTTCGTGCTGCTGTCATGCCTAGAAGGACTGCGGTTATCGTGTCGGCGGCGACGGCGGAGACGCCGAAGAAGAAGGGCGAGTCGAAAGGGTTCGTGGAAGAGATGAGGTTTGTGGCGATGAGGCTTCACACGAGGGACCAGGCCAGGGAGGGCGAGAAGGAGGTCAAGCAGCCCGAGGAGAAAGCCGTTACCAAGTGGAACCCATCCGTCGAAGGGTACCTGAAATTTCTTGTGGACAGTAAGCTCGTTTATGACACGCTGGAGAAAATCGTTCATGAGGCTCCTCATCCTTTTTTTTGTTACTTTATCCTTACTTTATCTCACAGGTTGCTGAAAAGTTACTTAACAACAAGGCATTGGAGTTCTACAAATGGGACGGTGACCTTCCCCAGTTGTTGCAGAATGTGA

>Glyma.06g221900.3 sequence-type=CDS polypeptide=Glyma.06g221900.3.p locus=Glyma.06g221900 ID=Glyma.06g221900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCATCACTAACAACAACTCTATCCCAGTCCCAATCGCTCTATATTAAGCCCCGCCTGGCGCCACGGCCTCCTCATCCCCAATTCCGCTCTCTTTTCCTAACCTCACCGGCGGTGGCGGGTGGTGTTCGTGCTGCTGTCATGCCTAGAAGGACTGCGGTTATCGTGTCGGCGGCGACGGCGGAGACGCCGAAGAAGAAGGGCGAGTCGAAAGGGTTCGTGGAAGAGATGAGGTTTGTGGCGATGAGGCTTCACACGAGGGACCAGGCCAGGGAGGGCGAGAAGGAGGTCAAGCAGCCCGAGGAGAAAGCCGTTACCAAGTGGAACCCATCCGTCGAAGGGTACCTGAAATTTCTTGTGGACAGTAAGCTCGTTTATGACACGCTGGAGAAAATCGTTCATGAGGCTCCTCATCCTTTTTATGCTGAATTCAGAAACACTGGATTGGAAAGGTCTGCAAGTTTGGTAGAAGATTTGGATTGGTTCAAGGAGCAAGGTTATACCATTCCTGAACCTTCATCTCCTGGTCTTACCTATGCACAATATCTTAAGGAGTTATCTGTGAAGGATCCTCAAGCATTCATTTGCCACTTTTACAACATCTACTTTGCTCATTCAGCTGGTGGTCGAATGATTGGGAAAAAGGTTGCTGAAAAGTTACTTAACAACAAGGCATTGGAGTTCTACAAATGGGACGGTGACCTTCCCCAGTTGTTGCAGAATGTGAGGGACAAGTTGAATAAGGTTGCTGAACCTTGGACTCGGGAAGAAAAGGACCACTGTCTGGAAGAAACAGAAAAATCATTCAAGCTCTCTGGAGAGATTCTCCGTCTGATTTTATCATGA

>Glyma.06g221900.4 sequence-type=CDS polypeptide=Glyma.06g221900.4.p locus=Glyma.06g221900 ID=Glyma.06g221900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCATCACTAACAACAACTCTATCCCAGTCCCAATCGCTCTATATTAAGCCCCGCCTGGCGCCACGGCCTCCTCATCCCCAATTCCGCTCTCTTTTCCTAACCTCACCGGCGGTGGCGGGTGGTGTTCGTGCTGCTGTCATGCCTAGAAGGACTGCGGTTATCGTGTCGGCGGCGACGGCGGAGACGCCGAAGAAGAAGGGCGAGTCGAAAGGGTTCGTGGAAGAGATGAGGTTTGTGGCGATGAGGCTTCACACGAGGGACCAGGCCAGGGAGGGCGAGAAGGAGGTCAAGCAGCCCGAGGAGAAAGCCGTTACCAAGTGGAACCCATCCGTCGAAGGGTACCTGAAATTTCTTGTGGACAGTAAGCTCGTTTATGACACGCTGGAGAAAATCGTTCATGAGGCTCCTCATCCTTTTTATGCTGAATTCAGAAACACTGGATTGGAAAGGTCTGCAAGTTTGGTAGAAGATTTGGATTGGTTCAAGGAGCAAGGTTATACCATTCCTGAACCTTCATCTCCTGGTCTTACCTATGCACAATATCTTAAGGAGTTATCTGTGAAGGATCCTCAAGCATTCATTTGCCACTTTTACAACATCTACTTTGCTCATTCAGCTGGTGGTCGAATGATTGGGAAAAAGGTTACCAAACACATGCATGCTTAA
Predicted protein sequences of Glyma.06g221900
>Glyma.06g221900.1.p sequence-type=predicted peptide transcript=Glyma.06g221900.1 locus=Glyma.06g221900 ID=Glyma.06g221900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSLTTTLSQSQSLYIKPRLAPRPPHPQFRSLFLTSPAVAGGVRAAVMPRRTAVIVSAATAETPKKKGESKGFVEEMRFVAMRLHTRDQAREGEKEVKQPEEKAVTKWNPSVEGYLKFLVDSKLVYDTLEKIVHEAPHPFYAEFRNTGLERSASLVEDLDWFKEQGYTIPEPSSPGLTYAQYLKELSVKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKLLNNKALEFYKWDGDLPQLLQNVRDKLNKVAEPWTREEKDHCLEETEKSFKLSGEILRLILS*

>Glyma.06g221900.2.p sequence-type=predicted peptide transcript=Glyma.06g221900.2 locus=Glyma.06g221900 ID=Glyma.06g221900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSLTTTLSQSQSLYIKPRLAPRPPHPQFRSLFLTSPAVAGGVRAAVMPRRTAVIVSAATAETPKKKGESKGFVEEMRFVAMRLHTRDQAREGEKEVKQPEEKAVTKWNPSVEGYLKFLVDSKLVYDTLEKIVHEAPHPFFCYFILTLSHRLLKSYLTTRHWSSTNGTVTFPSCCRM*

>Glyma.06g221900.3.p sequence-type=predicted peptide transcript=Glyma.06g221900.3 locus=Glyma.06g221900 ID=Glyma.06g221900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSLTTTLSQSQSLYIKPRLAPRPPHPQFRSLFLTSPAVAGGVRAAVMPRRTAVIVSAATAETPKKKGESKGFVEEMRFVAMRLHTRDQAREGEKEVKQPEEKAVTKWNPSVEGYLKFLVDSKLVYDTLEKIVHEAPHPFYAEFRNTGLERSASLVEDLDWFKEQGYTIPEPSSPGLTYAQYLKELSVKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKLLNNKALEFYKWDGDLPQLLQNVRDKLNKVAEPWTREEKDHCLEETEKSFKLSGEILRLILS*

>Glyma.06g221900.4.p sequence-type=predicted peptide transcript=Glyma.06g221900.4 locus=Glyma.06g221900 ID=Glyma.06g221900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSLTTTLSQSQSLYIKPRLAPRPPHPQFRSLFLTSPAVAGGVRAAVMPRRTAVIVSAATAETPKKKGESKGFVEEMRFVAMRLHTRDQAREGEKEVKQPEEKAVTKWNPSVEGYLKFLVDSKLVYDTLEKIVHEAPHPFYAEFRNTGLERSASLVEDLDWFKEQGYTIPEPSSPGLTYAQYLKELSVKDPQAFICHFYNIYFAHSAGGRMIGKKVTKHMHA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo