Glyma.06g210400

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Report for Sequence Feature Glyma.06g210400

Feature Type:	gene_model
Chromosome:	Gm06
Start:	20768340
stop:	20778709
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.06g210400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03280.1	AT	Transcription factor TFIIE, alpha subunit	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006367	GO-bp	transcription initiation from RNA polymerase II promoter	EnsemblGenomes	N/A	IEA
GO:0043565	GO-mf	sequence-specific DNA binding	EnsemblGenomes	N/A	IEA
KOG2593	KOG	Transcription initiation factor IIE, alpha subunit	JGI	N/A	IEA
PTHR13097	Panther	TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT	JGI	N/A	IEA
PF02002	PFAM	TFIIE alpha subunit	JGI	N/A	IEA

Expression Patterns of Glyma.06g210400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g210400 not represented in the dataset	Glyma.06g210400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.06g210400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma06g23400	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.06g210400

Limit To All Plant Sequences

>Glyma.06g210400.2 sequence-type=transcript locus=Glyma.06g210400 ID=Glyma.06g210400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAGCCCTCCCTCCCATCAAGCAGGTTTCTTGTCTTCCGGTTTCTGGTAGATCACCACTTGGGTTGGGAGAAAAGAACAGACAATGGAAGCGAGTTGAGAGCTACCTCGGTTGAACATCATCGAATCGAATAATCACTTTTACACATGACTTATCCTTCTATTCCGATTTAAGCCCCTAAACGAACTATCGAAGCCACTTCAAAAACTACTCTTAGATTGCTTCGATGGTCGATCACTACAACAAGCTGGTTAAACTAGCGGCGAGGGCTTTCTACGATGATCTAACGAGTAAAGGAGAGAATCAACCCAAATCGGGAAGGAGTGATAACAGAGGAATCGCTGTGGTGATTCTCGACGCTCTCACAAGACAGCAAAAGGAGCAAAAATGTATAGTGCTGCTACAGCTGCTACAGTTGATGTTCAGCTGACTGGAAAAGAGGGAGAAGAAAAGGTCAAGTTGCACACGCACTCTTACTGTTGTCTAGATTATGCACAGATATATGATGTGGTTAGGTACAGAATACATCGCATGAAAAAGCTGCTGAAAGATGAATTGGACAACAAGAACACAATTGAGGAATATATCTGTACAAAATGTGGAAAAAGATATAATGCTCTGGATGCATTGCGATTAGTATCTTTTGAAGATGATGACTTCCATTGTGAAAGTTGTAATGGAAAACTTGAGGTAGAAAATGACAAATTTGTTGCTCAAGAAGGGGGTGATGGAGATGAAAATGCAAGAAGACGGCGCCATGAAAAGTTAAAAGACATGCTTCAGAAGATGGAGGCACAGCTGAAGCCTTTGATGGACCAACTCAGCCGGGTGAAAGATTTGCCTGTTCCAGAATTTGGCAGTCTTCTAGCGTGGGAAGCTCGAGCTAGTGCTATGGGGCGTGCAGCCAACGGAGATATGTCTGGTGATTCTAAAATGTCTCAGCTTGGATATAATGGAGCACCAATGCCTTATAGTGGAGATACTAAGGTTGTGGTGGACTTCAATGGGACTGAAGACATAAAGGATGTTAAGTCTGAAACTGGAAGTGCATCTCTAAAGGTTTTGCCACCATGGATGATTAAATCAGGGATGGTTCTTACAAAGGAACAACGTGGAGAGGCGAAGGAGGAAATAAAGATGGATGGGACTTCAACTTCCTCATCAGCACAGTACTTGGACGACAAGAAATCAACAGTTGACCATGATGATAAGAAAAATATACAGGATGAGTATATTAAAGCTTATTATGCTGCTTTGCTTAAACAACAACATGAATTGGAAGCTGCTAGTAAACAAGAATTGCCAAATACACTCACTGCAAATGATCCTTCTAGCAGTGCTTCTAATCGTCAAGTTGGCATGAAATCAAAACTTGAGGAAGATGATGATGGTACTGAATGGGAGGAGGCTCCAGTTGCAGGTATTGGAAATGAAAATTACAAGGTCGATTTGAATGTTGAAGCTGATGATACTCCAGCTGATGACGATGAAGAAGTGGACTGGGAGGAAGGTTGATGAAAAGAACAGTAAGGTTCACAAAATATAATTTTTGATGGCATATACTTATATTCAACAAATGGCAGCAGTTATATGACTGATGTCTCCTCACAATAATGCTACTATTCAGTTATATTTCCGGCGGCCTCAACGGTGGGAAACTCGATTACAATATATATTTTTTCTACCAGAAGTTTAATTTGGTGTTTCTGGGGGAAGTAAAATCTAATGCTTTGTTGTACTACTGAATGCGTGCTACAATGGCTTTCTTTGTAAGGCATCACTTATCCAATTGAATTAGTTTACCAATGCAATAATCGTTGCCATACACATTTAAATAATGCATGGTAAGATTTTTTATTTTTTTTTTCATTCCTGGAGAAGTTGTCTTATTTCATTCCTGGTAGCCAAAACTGTATTTAGCATGCCTGATTTGCCGCGTTAGTCCGGATCTCATGGTGTATAATTTAAAAAATAAACACCAAATGTGTGAATTATTTGGCGTGAGTATAAAGTTGTATTAAGTATTTTATCGTTCACTGTCAT

>Glyma.06g210400.3 sequence-type=transcript locus=Glyma.06g210400 ID=Glyma.06g210400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAGCCCTCCCTCCCATCAAGCAGGTTTCTTGTCTTCCGGTTTCTGGTAGATCACCACTTGGGTTGGGAGAAAAGAACAGACAATGGAAGCGAGTTGAGAGCTACCTCGGTTGAACATCATCGAATCGAATAATCACTTTTACACATGACTTATCCTTCTATTCCGATTTAAGCCCCTAAACGAACTATCGAAGCCACTTCAAAAACTACTCTTAGATTGCTTCGATGGTCGATCACTACAACAAGCTGGTTAAACTAGCGGCGAGGGCTTTCTACGATGATCTAACGAGTAAAGGAGAGAATCAACCCAAATCGGGAAGGAGTGATAACAGAGGAATCGCTGTGGTGATTCTCGACGCTCTCACAAGGCGACAATGGGTCCGAGAAGAAGACTTGGCAAAAGATCTCAAATTACACACAAAACAGCTTCGCCGAACTCTCCGGTTTTTTGAAGAGGAGAAGATCATTACTCGAGAATATAGGAGAGAGACAGCAAAAGGAGCAAAAATGTATAGTGCTGCTACAGCTGCTACAGTTGATGTTCAGCTGACTGGAAAAGAGGGAGAAGAAAAGGTCAAGTTGCACACGCACTCTTACTGTTGTCTAGATTATGCACAGATATATGATGTGGTTAGGTACAGAATACATCGCATGAAAAAGCTGCTGAAAGATGAATTGGACAACAAGAACACAATTGAGGAATATATCTGTACAAAATGTGGAAAAAGATATAATGCTCTGGATGCATTGCGATTAGTATCTTTTGAAGATGATGACTTCCATTGTGAAAGTTGTAATGGAAAACTTGAGGTAGAAAATGACAAATTTGTTGCTCAAGAAGGGGGTGATGGAGATGAAAATGCAAGAAGACGGCGCCATGAAAAGTTAAAAGACATGCTTCAGAAGATGGAGGCACAGCTGAAGCCTTTGATGGACCAACTCAGCCGGGTGAAAGATTTGCCTGTTCCAGAATTTGGCAGTCTTCTAGCGTGGGAAGCTCGAGCTAGTGCTATGGGGCGTGCAGCCAACGGAGATATGTCTGGTGATTCTAAAATGTCTCAGCTTGGATATAATGGAGCACCAATGCCTTATAGTGGAGATACTAAGGTTGTGGTGGACTTCAATGGGACTGAAGACATAAAGGATGTTAAGTCTGAAACTGGAAGTGCATCTCTAAAGGTTTTGCCACCATGGATGATTAAATCAGGGATGGTTCTTACAAAGGAACAACGTGGAGAGGCGAAGGAGGAAATAAAGATGGATGGGACTTCAACTTCCTCATCAGCACAGTACTTGGACGACAAGAAATCAACAGTTGACCATGATGATAAGAAAAATATACAGGCATATACTATATGATGAGCAATTTTCTTTTTCTTTTATCTTCTGTCTTTTTCACTTCAGT

Coding sequences of Glyma.06g210400

Limit To All Plant Sequences

>Glyma.06g210400.1 sequence-type=CDS polypeptide=Glyma.06g210400.1.p locus=Glyma.06g210400 ID=Glyma.06g210400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTCGATCACTACAACAAGCTGGTTAAACTAGCGGCGAGGGCTTTCTACGATGATCTAACGAGTAAAGGAGAGAATCAACCCAAATCGGGAAGGAGTGATAACAGAGGAATCGCTGTGGTGATTCTCGACGCTCTCACAAGGCGACAATGGGTCCGAGAAGAAGACTTGGCAAAAGATCTCAAATTACACACAAAACAGCTTCGCCGAACTCTCCGGTTTTTTGAAGAGGAGAAGATCATTACTCGAGAATATAGGAGAGAGACAGCAAAAGGAGCAAAAATGTATAGTGCTGCTACAGCTGCTACAGTTGATGTTCAGCTGACTGGAAAAGAGGGAGAAGAAAAGGTCAAGTTGCACACGCACTCTTACTGTTGTCTAGATTATGCACAGATATATGATGTGGTTAGGTACAGAATACATCGCATGAAAAAGCTGCTGAAAGATGAATTGGACAACAAGAACACAATTGAGGAATATATCTGTACAAAATGTGGAAAAAGATATAATGCTCTGGATGCATTGCGATTAGTATCTTTTGAAGATGATGACTTCCATTGTGAAAGTTGTAATGGAAAACTTGAGGTAGAAAATGACAAATTTGTTGCTCAAGAAGGGGGTGATGGAGATGAAAATGCAAGAAGACGGCGCCATGAAAAGTTAAAAGACATGCTTCAGAAGATGGAGGCACAGCTGAAGCCTTTGATGGACCAACTCAGCCGGGTGAAAGATTTGCCTGTTCCAGAATTTGGCAGTCTTCTAGCGTGGGAAGCTCGAGCTAGTGCTATGGGGCGTGCAGCCAACGGAGATATGTCTGGTGATTCTAAAATGTCTCAGCTTGGATATAATGGAGCACCAATGCCTTATAGTGGAGATACTAAGGTTGTGGTGGACTTCAATGGGACTGAAGACATAAAGGATGTTAAGTCTGAAACTGGAAGTGCATCTCTAAAGGTTTTGCCACCATGGATGATTAAATCAGGGATGGTTCTTACAAAGGAACAACGTGGAGAGGCGAAGGAGGAAATAAAGATGGATGGGACTTCAACTTCCTCATCAGCACAGTACTTGGACGACAAGAAATCAACAGTTGACCATGATGATAAGAAAAATATACAGGATGAGTATATTAAAGCTTATTATGCTGCTTTGCTTAAACAACAACATGAATTGGAAGCTGCTAGTAAACAAGAATTGCCAAATACACTCACTGCAAATGATCCTTCTAGCAGTGCTTCTAATCGTCAAGTTGGCATGAAATCAAAACTTGAGGAAGATGATGATGGTACTGAATGGGAGGAGGCTCCAGTTGCAGGTATTGGAAATGAAAATTACAAGGTCGATTTGAATGTTGAAGCTGATGATACTCCAGCTGATGACGATGAAGAAGTGGACTGGGAGGAAGGTTGA

>Glyma.06g210400.2 sequence-type=CDS polypeptide=Glyma.06g210400.2.p locus=Glyma.06g210400 ID=Glyma.06g210400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATAGTGCTGCTACAGCTGCTACAGTTGATGTTCAGCTGACTGGAAAAGAGGGAGAAGAAAAGGTCAAGTTGCACACGCACTCTTACTGTTGTCTAGATTATGCACAGATATATGATGTGGTTAGGTACAGAATACATCGCATGAAAAAGCTGCTGAAAGATGAATTGGACAACAAGAACACAATTGAGGAATATATCTGTACAAAATGTGGAAAAAGATATAATGCTCTGGATGCATTGCGATTAGTATCTTTTGAAGATGATGACTTCCATTGTGAAAGTTGTAATGGAAAACTTGAGGTAGAAAATGACAAATTTGTTGCTCAAGAAGGGGGTGATGGAGATGAAAATGCAAGAAGACGGCGCCATGAAAAGTTAAAAGACATGCTTCAGAAGATGGAGGCACAGCTGAAGCCTTTGATGGACCAACTCAGCCGGGTGAAAGATTTGCCTGTTCCAGAATTTGGCAGTCTTCTAGCGTGGGAAGCTCGAGCTAGTGCTATGGGGCGTGCAGCCAACGGAGATATGTCTGGTGATTCTAAAATGTCTCAGCTTGGATATAATGGAGCACCAATGCCTTATAGTGGAGATACTAAGGTTGTGGTGGACTTCAATGGGACTGAAGACATAAAGGATGTTAAGTCTGAAACTGGAAGTGCATCTCTAAAGGTTTTGCCACCATGGATGATTAAATCAGGGATGGTTCTTACAAAGGAACAACGTGGAGAGGCGAAGGAGGAAATAAAGATGGATGGGACTTCAACTTCCTCATCAGCACAGTACTTGGACGACAAGAAATCAACAGTTGACCATGATGATAAGAAAAATATACAGGATGAGTATATTAAAGCTTATTATGCTGCTTTGCTTAAACAACAACATGAATTGGAAGCTGCTAGTAAACAAGAATTGCCAAATACACTCACTGCAAATGATCCTTCTAGCAGTGCTTCTAATCGTCAAGTTGGCATGAAATCAAAACTTGAGGAAGATGATGATGGTACTGAATGGGAGGAGGCTCCAGTTGCAGGTATTGGAAATGAAAATTACAAGGTCGATTTGAATGTTGAAGCTGATGATACTCCAGCTGATGACGATGAAGAAGTGGACTGGGAGGAAGGTTGA

>Glyma.06g210400.3 sequence-type=CDS polypeptide=Glyma.06g210400.3.p locus=Glyma.06g210400 ID=Glyma.06g210400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTCGATCACTACAACAAGCTGGTTAAACTAGCGGCGAGGGCTTTCTACGATGATCTAACGAGTAAAGGAGAGAATCAACCCAAATCGGGAAGGAGTGATAACAGAGGAATCGCTGTGGTGATTCTCGACGCTCTCACAAGGCGACAATGGGTCCGAGAAGAAGACTTGGCAAAAGATCTCAAATTACACACAAAACAGCTTCGCCGAACTCTCCGGTTTTTTGAAGAGGAGAAGATCATTACTCGAGAATATAGGAGAGAGACAGCAAAAGGAGCAAAAATGTATAGTGCTGCTACAGCTGCTACAGTTGATGTTCAGCTGACTGGAAAAGAGGGAGAAGAAAAGGTCAAGTTGCACACGCACTCTTACTGTTGTCTAGATTATGCACAGATATATGATGTGGTTAGGTACAGAATACATCGCATGAAAAAGCTGCTGAAAGATGAATTGGACAACAAGAACACAATTGAGGAATATATCTGTACAAAATGTGGAAAAAGATATAATGCTCTGGATGCATTGCGATTAGTATCTTTTGAAGATGATGACTTCCATTGTGAAAGTTGTAATGGAAAACTTGAGGTAGAAAATGACAAATTTGTTGCTCAAGAAGGGGGTGATGGAGATGAAAATGCAAGAAGACGGCGCCATGAAAAGTTAAAAGACATGCTTCAGAAGATGGAGGCACAGCTGAAGCCTTTGATGGACCAACTCAGCCGGGTGAAAGATTTGCCTGTTCCAGAATTTGGCAGTCTTCTAGCGTGGGAAGCTCGAGCTAGTGCTATGGGGCGTGCAGCCAACGGAGATATGTCTGGTGATTCTAAAATGTCTCAGCTTGGATATAATGGAGCACCAATGCCTTATAGTGGAGATACTAAGGTTGTGGTGGACTTCAATGGGACTGAAGACATAAAGGATGTTAAGTCTGAAACTGGAAGTGCATCTCTAAAGGTTTTGCCACCATGGATGATTAAATCAGGGATGGTTCTTACAAAGGAACAACGTGGAGAGGCGAAGGAGGAAATAAAGATGGATGGGACTTCAACTTCCTCATCAGCACAGTACTTGGACGACAAGAAATCAACAGTTGACCATGATGATAAGAAAAATATACAGGCATATACTATATGA

Predicted protein sequences of Glyma.06g210400

Limit To All Plant Sequences

>Glyma.06g210400.1.p sequence-type=predicted peptide transcript=Glyma.06g210400.1 locus=Glyma.06g210400 ID=Glyma.06g210400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVDHYNKLVKLAARAFYDDLTSKGENQPKSGRSDNRGIAVVILDALTRRQWVREEDLAKDLKLHTKQLRRTLRFFEEEKIITREYRRETAKGAKMYSAATAATVDVQLTGKEGEEKVKLHTHSYCCLDYAQIYDVVRYRIHRMKKLLKDELDNKNTIEEYICTKCGKRYNALDALRLVSFEDDDFHCESCNGKLEVENDKFVAQEGGDGDENARRRRHEKLKDMLQKMEAQLKPLMDQLSRVKDLPVPEFGSLLAWEARASAMGRAANGDMSGDSKMSQLGYNGAPMPYSGDTKVVVDFNGTEDIKDVKSETGSASLKVLPPWMIKSGMVLTKEQRGEAKEEIKMDGTSTSSSAQYLDDKKSTVDHDDKKNIQDEYIKAYYAALLKQQHELEAASKQELPNTLTANDPSSSASNRQVGMKSKLEEDDDGTEWEEAPVAGIGNENYKVDLNVEADDTPADDDEEVDWEEG*

>Glyma.06g210400.2.p sequence-type=predicted peptide transcript=Glyma.06g210400.2 locus=Glyma.06g210400 ID=Glyma.06g210400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYSAATAATVDVQLTGKEGEEKVKLHTHSYCCLDYAQIYDVVRYRIHRMKKLLKDELDNKNTIEEYICTKCGKRYNALDALRLVSFEDDDFHCESCNGKLEVENDKFVAQEGGDGDENARRRRHEKLKDMLQKMEAQLKPLMDQLSRVKDLPVPEFGSLLAWEARASAMGRAANGDMSGDSKMSQLGYNGAPMPYSGDTKVVVDFNGTEDIKDVKSETGSASLKVLPPWMIKSGMVLTKEQRGEAKEEIKMDGTSTSSSAQYLDDKKSTVDHDDKKNIQDEYIKAYYAALLKQQHELEAASKQELPNTLTANDPSSSASNRQVGMKSKLEEDDDGTEWEEAPVAGIGNENYKVDLNVEADDTPADDDEEVDWEEG*

>Glyma.06g210400.3.p sequence-type=predicted peptide transcript=Glyma.06g210400.3 locus=Glyma.06g210400 ID=Glyma.06g210400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVDHYNKLVKLAARAFYDDLTSKGENQPKSGRSDNRGIAVVILDALTRRQWVREEDLAKDLKLHTKQLRRTLRFFEEEKIITREYRRETAKGAKMYSAATAATVDVQLTGKEGEEKVKLHTHSYCCLDYAQIYDVVRYRIHRMKKLLKDELDNKNTIEEYICTKCGKRYNALDALRLVSFEDDDFHCESCNGKLEVENDKFVAQEGGDGDENARRRRHEKLKDMLQKMEAQLKPLMDQLSRVKDLPVPEFGSLLAWEARASAMGRAANGDMSGDSKMSQLGYNGAPMPYSGDTKVVVDFNGTEDIKDVKSETGSASLKVLPPWMIKSGMVLTKEQRGEAKEEIKMDGTSTSSSAQYLDDKKSTVDHDDKKNIQAYTI*

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