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Report for Sequence Feature Glyma.06g209000

Feature Type:gene_model
Chromosome:Gm06
Start:20530711
stop:20534538
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g209000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23090.1AT nuclear factor Y, subunit B13 JGI N/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
GO:0046982GO-mf protein heterodimerization activity EnsemblGenomesN/AIEA
KOG0871 KOG Class 2 transcription repressor NC2, beta subunit (Dr1) JGI N/AIEA
PTHR11064Panther CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED JGI N/AIEA
PTHR11064:SF8Panther OLIGO(A)/OLIGO(T)-BINDING PROTEIN JGI N/AIEA
PF00808PFAM Histone-like transcription factor (CBF/NF-Y) and archaeal histone JGI N/AIEA

Proteins Associated with Glyma.06g209000
LocusGene SymbolProtein Name
DR1 class 2 transcription repressor NC2 beta 2

Expression Patterns of Glyma.06g209000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g209000 not represented in the dataset
Glyma.06g209000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g209000
ParalogEvidenceComments
Glyma.04g145000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g209000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Transcripts of Glyma.06g209000
>Glyma.06g209000.2 sequence-type=transcript locus=Glyma.06g209000 ID=Glyma.06g209000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCGCTCTCAAGGCGCGTGGGAAGAGGTTGACGTCAACGCGCTTTTGGGTTTGCCCTAACGCAAGGGAGGGCATGACGGAAGAGCTCTCTCTCTCTTGTTCTTATCCATCGCATTGAAAAGCAGCACCATCACCACCCCCACCTCTTACCCCTTCTTTCATAAATATGCGTCTCTGCAACAACATGTTCACCACCACCTCCTTGTTCTTCACATCATCCTCATCATCTTCTTCAATCAGTTGACTCTTCGTTCCTCCCTCTATTCTTTCGGATGGAGCCCATGGACATCGTTGGGAAGGCCAAGGAAGACGCTTCTCTTCCTAAAGCGACAATGACGAAAATTATTAAAGAGATGTTGCCCCCGGACGTGCGTGTCGCCAGAGATGCACAGGATTTATTGATCGAGTGTTGTGTCGAGTTTATAAACCTTGTCTCGTCAGAGTCCAATGAAGTCTGTAACAAAGAAGAAAGAAGGACGATTGCACCGGAGCACGTGTTAAAGGCTTTAGGGGTTCTTGGATTTGGCGAGTACATTGAGGAAGTTTATGCAGCATATGAACAACACAAGTTGGAAACAATGGTGATTGTTTATGTTAATGACCAATGTGCATGATATGTATTACAACTTAGCAGCAGAATTGTTTTTGTCTTGTATTCATCCCTTAATTGTTTATTGGGTGATCAATTTTATAAGAATCCATGAAAACTTTTAAAAGTGCCCTTGGACCATTTTTGAGCTTTTATCTGATCAACCATACTAGTGGAGCTACCAGCCTGTCTAAAGGTCATCTGTCATAGGGGAGCACCTGCAGGGTTCCATGATGATCCTCTAAAGAGACCCACCCAAGTTGGTTATGGTTCTCTTATAATCATGCTGGTAGCCTGTTGGTGTGACCCATGAAATGTAAATATGGTATACCATAGGTGTATGTGTTGGGGAGATCTTAATGGGATGATAACTTGATTTTACTCCTCTCCTCTACTTTATAGGGTGCTTTGGGAGCATGGCCTCTGTGGTTTGGTTGTGCCAGTCTGAGCTTCTATATAATTTGTAGAGGGACCCATTAAAATGGGTATTCTGTAGGCAAAAGCACTGGAAAGACCCTAATGGGCTGATAACCTGACTATGGTCCCCTCCTCTGTTTCCATTAAGTGTTTTAAATATTATGTTTGAGAGCTCAGCCTATAAATTTTCATGCTGGTGAAATTGAAATTACCTATGATTTATGAATCTCCACTTATGTGTATGGTCCATTCTATCCTTGTGGAGTGGTTAAGTATTCCATTAAACTTTGAAGTAAATTACTGATTGTTCTGTGATTGTGGTTTGTGATAAATGATGTAAGAAGTTGTGGTCCAGGCAAATTGATAATCCATCTGGCTATTGAGTTCTTGGTATATGTTCTTGAATTTTTTGTGCCAATGCTCATTGTGACCACTGAGCACACCATGAGCTGTGAGGCAGGAGGGACATGTATTATTGATCAATTAGACCGGAAAAGTGAATTTTGAATCATTAAATTACTATTGTTGTTTATAGATTGACTTTGTTAAAGAATTATCTTCTGACTTTTTTTTTTCTTTTTTAACCTTCCAGCAAGATTCTTTAAAAGGTGCAAAGTGGAGCAACAGAGCTGAGATGACTGAGGAAGAAGCATTGGCTGAACAGCAAAGGATGTTTGCAGAGGCACGTGCAAGAATGAATGGAGGAGCCATTCAATCCAAGGAGCCAGAGGCTGACCAAAGTTTAGAGAGCTAACTTTATAGGACACTTTTATTTTCTTTTGAAGCATAGGCAAGCAGCATCTCTTACTCTTCCCTATGCGTTGTTAATTTAGCTCGATTTTGCACATACCCCCATTCACTAGTTTGCTGGCCTACGTGAATGTACTCGCCATTTGTGTTCTTTTAGTAATCCATATTTGTAAGTTAATGTAATTATTGGAGTTCATCTAAACCCTCGTCTATTTAGAATTTTACATGTAGATTATTTCATTTACCTGTTGTATCTCCCACACCAACAACAGCTATTGCCTTGATTTTGACAATAGTTGCTATATTAGAATGTAACAATCTATTATATTCTGTTATATAGAAAGTCGTGAAGGTTTTACAACAGCAA

>Glyma.06g209000.3 sequence-type=transcript locus=Glyma.06g209000 ID=Glyma.06g209000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCGCTCTCAAGGCGCGTGGGAAGAGGTTGACGTCAACGCGCTTTTGGGTTTGCCCTAACGCAAGGGAGGGCATGACGGAAGAGCTCTCTCTCTCTTGTTCTTATCCATCGCATTGAAAAGCAGCACCATCACCACCCCCACCTCTTACCCCTTCTTTCATAAATATGCGTCTCTGCAACAACATGTTCACCACCACCTCCTTGTTCTTCACATCATCCTCATCATCTTCTTCAATCAGTTGACTCTTCGTTCCTCCCTCTATTCTTTCGGATGGAGCCCATGGACATCGTTGGGAAGGCCAAGGAAGACGCTTCTCTTCCTAAAGTTGGTATTTCTTGCAGCGACAATGACGAAAATTATTAAAGAGATGTTGCCCCCGGACGTGCGTGTCGCCAGAGATGCACAGGATTTATTGATCGAGTGTTGTGTCGAGTTTATAAACCTTGTCTCGTCAGAGTCCAATGAAGTCTGTAACAAAGAAGAAAGAAGGACGATTGCACCGGAGCACGTGTTAAAGGCTTTAGGGGTTCTTGGATTTGGCGAGTACATTGAGGAAGTTTATGCAGCATATGAACAACACAAGTTGGAAACAATGCAAGATTCTTTAAAAGGTGCAAAGTGGAGCAACAGAGCTGAGATGACTGAGGAAGAAGCATTGGCTGAACAGCAAAGGATGTTTGCAGAGGCACGTGCAAGAATGAATGGAGGAGCCATTCAATCCAAGGAGCCAGAGGCTGACCAAAGTTTAGAGAGCTAACTTTATAGGACACTTTTATTTTCTTTTGAAGCATAGGCAAGCAGCATCTCTTACTCTTCCCTATGCGTTGTTAATTTAGCTCGATTTTGCACATACCCCCATTCACTAGTTTGCTGGCCTACGTGAATGTACTCGCCATTTGTGTTCTTTTAGTAATCCATATTTGTAAGTTAATGTAATTATTGGAGTTCATCTAAACCCTCGTCTATTTAGAATTTTACATGTAGATTATTTCATTTACCTGTTGTATCTCCCACACCAACAACAGCTATTGCCTTGATTTTGACAATAGTTGCTATATTAGAATGTAACAATCTATTATATTCTGTTATATAGAAAGTCGTGAAGGTTTTACAACAGCAA

>Glyma.06g209000.4 sequence-type=transcript locus=Glyma.06g209000 ID=Glyma.06g209000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATCCATCGCATTGAAAAGCAGCACCATCACCACCCCCACCTCTTACCCCTTCTTTCATAAATATGCGTCTCTGCAACAACATGTTCACCACCACCTCCTTGTTCTTCACATCATCCTCATCATCTTCTTCAATCAGTTGACTCTTCGTTCCTCCCTCTATTCTTTCGGATGGAGCCCATGGACATCGTTGGGAAGGCCAAGGAAGACGCTTCTCTTCCTAAAGCGACAATGACGAAAATTATTAAAGAGATGTTGCCCCCGGACGTGCGTGTCGCCAGAGATGCACAGGATTTATTGATCGAGTGTTGTGTCGAGTTTATAAACCTTGTCTCGTCAGAGTCCAATGAAGTCTGTAACAAAGAAGAAAGAAGGACGATTGCACCGGAGCACGTGTTAAAGGCTTTAGGGCAAGATTCTTTAAAAGGTGCAAAGTGGAGCAACAGAGCTGAGATGACTGAGGAAGAAGCATTGGCTGAACAGCAAAGGATGTTTGCAGAGGCACGTGCAAGAATGAATGGAGGAGCCATTCAATCCAAGGAGCCAGAGGCTGACCAAAGTTTAGAGAGCTAACTTTATAGGACACTTTTATTTTCTTTTGAAGCATAGGCAAGCAGCATCTCTTACTCTTCCCTATGCGTTGTTAATTTAGCTCGATTTTGCACATACCCCCATTCACTAGTTTGCTGGCCTACGTGAATGTACTCGCCATTTGTGTTCTTTTAGTAATCCATATTTGTAAGTTAATGTAATTATTGGAGTTCATCTAAACCCTCGTCTATTTAGAATTTTACATGTAGATTATTTCATTTACCTGTTGTATCTCCCACACCAACAACAGCTATTGCCTTGATTTTGACAATAGTTGCTATATTAGAATGTAACAATCTATTATATTCTGTTATATAGAAAGTCGTGAAGGTTTTACAACAGCAA

>Glyma.06g209000.5 sequence-type=transcript locus=Glyma.06g209000 ID=Glyma.06g209000.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCGCTCTCAAGGCGCGTGGGAAGAGGTTGACGTCAACGCGCTTTTGGGTTTGCCCTAACGCAAGGGAGGGCATGACGGAAGAGCTCTCTCTCTCTTGTTCTTATCCATCGCATTGAAAAGCAGCACCATCACCACCCCCACCTCTTACCCCTTCTTTCATAAATATGCGTCTCTGCAACAACATGTTCACCACCACCTCCTTGTTCTTCACATCATCCTCATCATCTTCTTCAATCAGTTGACTCTTCGTTCCTCCCTCTATTCTTTCGGATGGAGCCCATGGACATCGTTGGGAAGGCCAAGGAAGACGCTTCTCTTCCTAAAGCGACAATGACGAAAATTATTAAAGAGATGTTGCCCCCGGACGTGCGTGTCGCCAGAGATGCACAGGATTTATTGATCGAGTGTTGTGTCGAGTTTATAAACCTTGTCTCGTCAGAGTCCAATGAAGTCTGTAACAAAGAAGAAAGAAGGACGATTGCACCGGAGCACGTGTTAAAGGCTTTAGGGGTATTTCTCAAATTGTTGAACTGTTGTATTGCTAAAGTTTTCATGCAGATCCGTTCCAATTTATGTTTGATTAATTATGTAATCTCTTCtttgaagtgctgctttttgttttgtattttgaattttaatttctatcttgtaagtttttatGTGAGCTTGCTTTCTATTTGTGAAGTGCCTGTTATTCTTGAAATTTTTTTTTTTTGTGTTGCATTGTAGTTTGATAGCCAATGGTAGCGCAGTAGCAGGTTATATTAGTCGTGACTTTTTTAGTTTTGGGAATTTTAGATAGTGGGTATATTTTGTAGCTGTTGGAGGAAGCACATAATTATACAATTTTATAGGTTTGGTATGTAGGTTTACAATGTTTGTAGCACAATACTATTTTATCTTGGGCAGTGGTTCAATTTTCTAGTAAGCCATTGGATAAAAAAGATTCTTGATGTTATGGAATATGCTTTTGAAAAGATTTAGAATAAATATTTATTAATAGTAACAATTCCATCTTTCTTATCCCTATAGACCCTGATGTGCAAAAGGTATTTATGCTGTATACTTAAAATTGAAACCATCTGGATTTCACTCCCTTCTATCTGCACTGAGATAATCAGATTTGGCTTTGAAATGAATTTCTCCTAGTGTTTTCTCATTAGCCTAGCCTTTCCTTGGTTGCTTACTGTTTATCTTGTCCATCCTAAATGCTGTCCTGTGCTTTCCGCTTCCCAGGCATTGAAATGTGTTAACTCATTGGTAGAGTCTCTAATTCTGAAGCCAAAATT
Coding sequences of Glyma.06g209000
>Glyma.06g209000.1 sequence-type=CDS polypeptide=Glyma.06g209000.1.p locus=Glyma.06g209000 ID=Glyma.06g209000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGCCCATGGACATCGTTGGGAAGGCCAAGGAAGACGCTTCTCTTCCTAAAGCGACAATGACGAAAATTATTAAAGAGATGTTGCCCCCGGACGTGCGTGTCGCCAGAGATGCACAGGATTTATTGATCGAGTGTTGTGTCGAGTTTATAAACCTTGTCTCGTCAGAGTCCAATGAAGTCTGTAACAAAGAAGAAAGAAGGACGATTGCACCGGAGCACGTGTTAAAGGCTTTAGGGGTTCTTGGATTTGGCGAGTACATTGAGGAAGTTTATGCAGCATATGAACAACACAAGTTGGAAACAATGCAAGATTCTTTAAAAGGTGCAAAGTGGAGCAACAGAGCTGAGATGACTGAGGAAGAAGCATTGGCTGAACAGCAAAGGATGTTTGCAGAGGCACGTGCAAGAATGAATGGAGGAGCCATTCAATCCAAGGAGCCAGAGGCTGACCAAAGTTTAGAGAGCTAA

>Glyma.06g209000.2 sequence-type=CDS polypeptide=Glyma.06g209000.2.p locus=Glyma.06g209000 ID=Glyma.06g209000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGCCCATGGACATCGTTGGGAAGGCCAAGGAAGACGCTTCTCTTCCTAAAGCGACAATGACGAAAATTATTAAAGAGATGTTGCCCCCGGACGTGCGTGTCGCCAGAGATGCACAGGATTTATTGATCGAGTGTTGTGTCGAGTTTATAAACCTTGTCTCGTCAGAGTCCAATGAAGTCTGTAACAAAGAAGAAAGAAGGACGATTGCACCGGAGCACGTGTTAAAGGCTTTAGGGGTTCTTGGATTTGGCGAGTACATTGAGGAAGTTTATGCAGCATATGAACAACACAAGTTGGAAACAATGGTGATTGTTTATGTTAATGACCAATGTGCATGA

>Glyma.06g209000.3 sequence-type=CDS polypeptide=Glyma.06g209000.3.p locus=Glyma.06g209000 ID=Glyma.06g209000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGAAAATTATTAAAGAGATGTTGCCCCCGGACGTGCGTGTCGCCAGAGATGCACAGGATTTATTGATCGAGTGTTGTGTCGAGTTTATAAACCTTGTCTCGTCAGAGTCCAATGAAGTCTGTAACAAAGAAGAAAGAAGGACGATTGCACCGGAGCACGTGTTAAAGGCTTTAGGGGTTCTTGGATTTGGCGAGTACATTGAGGAAGTTTATGCAGCATATGAACAACACAAGTTGGAAACAATGCAAGATTCTTTAAAAGGTGCAAAGTGGAGCAACAGAGCTGAGATGACTGAGGAAGAAGCATTGGCTGAACAGCAAAGGATGTTTGCAGAGGCACGTGCAAGAATGAATGGAGGAGCCATTCAATCCAAGGAGCCAGAGGCTGACCAAAGTTTAGAGAGCTAA

>Glyma.06g209000.4 sequence-type=CDS polypeptide=Glyma.06g209000.4.p locus=Glyma.06g209000 ID=Glyma.06g209000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGCCCATGGACATCGTTGGGAAGGCCAAGGAAGACGCTTCTCTTCCTAAAGCGACAATGACGAAAATTATTAAAGAGATGTTGCCCCCGGACGTGCGTGTCGCCAGAGATGCACAGGATTTATTGATCGAGTGTTGTGTCGAGTTTATAAACCTTGTCTCGTCAGAGTCCAATGAAGTCTGTAACAAAGAAGAAAGAAGGACGATTGCACCGGAGCACGTGTTAAAGGCTTTAGGGCAAGATTCTTTAAAAGGTGCAAAGTGGAGCAACAGAGCTGAGATGACTGAGGAAGAAGCATTGGCTGAACAGCAAAGGATGTTTGCAGAGGCACGTGCAAGAATGAATGGAGGAGCCATTCAATCCAAGGAGCCAGAGGCTGACCAAAGTTTAGAGAGCTAA

>Glyma.06g209000.5 sequence-type=CDS polypeptide=Glyma.06g209000.5.p locus=Glyma.06g209000 ID=Glyma.06g209000.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGCCCATGGACATCGTTGGGAAGGCCAAGGAAGACGCTTCTCTTCCTAAAGCGACAATGACGAAAATTATTAAAGAGATGTTGCCCCCGGACGTGCGTGTCGCCAGAGATGCACAGGATTTATTGATCGAGTGTTGTGTCGAGTTTATAAACCTTGTCTCGTCAGAGTCCAATGAAGTCTGTAACAAAGAAGAAAGAAGGACGATTGCACCGGAGCACGTGTTAAAGGCTTTAGGGGTATTTCTCAAATTGTTGAACTGTTGTATTGCTAAAGTTTTCATGCAGATCCGTTCCAATTTATGTTTGATTAATTATGTAATCTCTTCTTTGAAGTGCTGCTTTTTGTTTTGTATTTTGAATTTTAATTTCTATCTTGTAAGTTTTTATGTGAGCTTGCTTTCTATTTGTGAAGTGCCTGTTATTCTTGAAATTTTTTTTTTTTGTGTTGCATTGTAG
Predicted protein sequences of Glyma.06g209000
>Glyma.06g209000.1.p sequence-type=predicted peptide transcript=Glyma.06g209000.1 locus=Glyma.06g209000 ID=Glyma.06g209000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEPMDIVGKAKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGAIQSKEPEADQSLES*

>Glyma.06g209000.2.p sequence-type=predicted peptide transcript=Glyma.06g209000.2 locus=Glyma.06g209000 ID=Glyma.06g209000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEPMDIVGKAKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMVIVYVNDQCA*

>Glyma.06g209000.3.p sequence-type=predicted peptide transcript=Glyma.06g209000.3 locus=Glyma.06g209000 ID=Glyma.06g209000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGAIQSKEPEADQSLES*

>Glyma.06g209000.4.p sequence-type=predicted peptide transcript=Glyma.06g209000.4 locus=Glyma.06g209000 ID=Glyma.06g209000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEPMDIVGKAKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGQDSLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGAIQSKEPEADQSLES*

>Glyma.06g209000.5.p sequence-type=predicted peptide transcript=Glyma.06g209000.5 locus=Glyma.06g209000 ID=Glyma.06g209000.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEPMDIVGKAKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGVFLKLLNCCIAKVFMQIRSNLCLINYVISSLKCCFLFCILNFNFYLVSFYVSLLSICEVPVILEIFFFCVAL*






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