SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.06g200800): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.06g200800): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.06g200800

Feature Type:gene_model
Chromosome:Gm06
Start:18403262
stop:18409657
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g200800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G15920.1AT Nodulin MtN3 family protein JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0008643GO-bp carbohydrate transport EnsemblGenomesN/AIEA
GO:0034219GO-bp carbohydrate transmembrane transport EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds JGI N/AIEA
GO:0051119GO-mf sugar transmembrane transporter activity EnsemblGenomesN/AIEA
PTHR10791Panther RAG1-ACTIVATING PROTEIN 1 JGI N/AIEA
PF00722PFAM Glycosyl hydrolases family 16 JGI N/AIEA
PF03083PFAM Sugar efflux transporter for intercellular exchange JGI N/AIEA

Expression Patterns of Glyma.06g200800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g200800 not represented in the dataset
Glyma.06g200800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g200800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g21665 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g200800
>Glyma.06g200800.2 sequence-type=transcript locus=Glyma.06g200800 ID=Glyma.06g200800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGATGCAAGTTTCTTTGTTGGAGTCATAGGCAGCATCATCTCAATTCTCATGTTTCTTTCTCCTGTACCTACGTTTTGGAAAATAAAGAAGCACGGATCTACGGAAGATTTCTCAAGCCTTCCTTACATTTGCACATTGCTTAATTGTTCCTTATGGACTTACTATGGAATCATAAAGGCTAGAGAGTACCTCGTGGCTACTGTCGATGGCTTTGGCATTGTGGTGGAGACAATCTATGTTATTCTATTTCTCATATATGCTCCAAAAGGGATAAGGGGTAGAACTGTCATTTTGGCTGTGATTTTGGATGTGGCAATTTCGACAGTAGCAGTAGTTACTACTCAATTAGCATTGCAAAGAGAAGCTCGTGGTACTCAATTAGCATTGCAAAGAGAAGCTCATGGTGGTGGTGTTGGTGTTATGGGAGCATGCTTAAACATTGTTATGTATTTCTCACCTCTCTCTGCCATGGTTCTGCACATTCTTCCATGTTTTAGTTGGATATATTGGTTATGCACGGTTTCTTTCACGTTAGAGGATGGCTGA
Coding sequences of Glyma.06g200800
>Glyma.06g200800.1 sequence-type=CDS polypeptide=Glyma.06g200800.1.p locus=Glyma.06g200800 ID=Glyma.06g200800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCTATCTCTGGTTCGACCCCACCAGAAACTTCCACACTTATTCTATCATTTGGAAGCACCAGCACATCATACCTACGTTTTGGAAAATAAAGAAGCACGGATCTACGGAAGATTTCTCAAGCCTTCCTTACATTTGCACATTGCTTAATTGTTCCTTATGGACTTACTATGGAATCATAAAGGCTAGAGAGTACCTCGTGGCTACTGTCGATGGCTTTGGCATTGTGGTGGAGACAATCTATGTTATTCTATTTCTCATATATGCTCCAAAAGGGATAAGGGGTAGAACTGTCATTTTGGCTGTGATTTTGGATGTGGCAATTTCGACAGTAGCAGTAGTTACTACTCAATTAGCATTGCAAAGAGAAGCTCGTGGTACTCAATTAGCATTGCAAAGAGAAGCTCATGGTGGTGGTGTTGGTGTTATGGGAGCATGCTTAAACATTGTTATGTATTTCTCACCTCTCTCTGCCATGGTTCTGCACATTCTTCCATGTTTTAGTTGGATATATTGGTTATGCACGGTTTCTTTCACGTTAGAGGATGGCTGA

>Glyma.06g200800.2 sequence-type=CDS polypeptide=Glyma.06g200800.2.p locus=Glyma.06g200800 ID=Glyma.06g200800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGATGCAAGTTTCTTTGTTGGAGTCATAGGCAGCATCATCTCAATTCTCATGTTTCTTTCTCCTGTACCTACGTTTTGGAAAATAAAGAAGCACGGATCTACGGAAGATTTCTCAAGCCTTCCTTACATTTGCACATTGCTTAATTGTTCCTTATGGACTTACTATGGAATCATAAAGGCTAGAGAGTACCTCGTGGCTACTGTCGATGGCTTTGGCATTGTGGTGGAGACAATCTATGTTATTCTATTTCTCATATATGCTCCAAAAGGGATAAGGGGTAGAACTGTCATTTTGGCTGTGATTTTGGATGTGGCAATTTCGACAGTAGCAGTAGTTACTACTCAATTAGCATTGCAAAGAGAAGCTCGTGGTACTCAATTAGCATTGCAAAGAGAAGCTCATGGTGGTGGTGTTGGTGTTATGGGAGCATGCTTAAACATTGTTATGTATTTCTCACCTCTCTCTGCCATGGTTCTGCACATTCTTCCATGTTTTAGTTGGATATATTGGTTATGCACGGTTTCTTTCACGTTAGAGGATGGCTGA
Predicted protein sequences of Glyma.06g200800
>Glyma.06g200800.1.p sequence-type=predicted peptide transcript=Glyma.06g200800.1 locus=Glyma.06g200800 ID=Glyma.06g200800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFYLWFDPTRNFHTYSIIWKHQHIIPTFWKIKKHGSTEDFSSLPYICTLLNCSLWTYYGIIKAREYLVATVDGFGIVVETIYVILFLIYAPKGIRGRTVILAVILDVAISTVAVVTTQLALQREARGTQLALQREAHGGGVGVMGACLNIVMYFSPLSAMVLHILPCFSWIYWLCTVSFTLEDG*

>Glyma.06g200800.2.p sequence-type=predicted peptide transcript=Glyma.06g200800.2 locus=Glyma.06g200800 ID=Glyma.06g200800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADASFFVGVIGSIISILMFLSPVPTFWKIKKHGSTEDFSSLPYICTLLNCSLWTYYGIIKAREYLVATVDGFGIVVETIYVILFLIYAPKGIRGRTVILAVILDVAISTVAVVTTQLALQREARGTQLALQREAHGGGVGVMGACLNIVMYFSPLSAMVLHILPCFSWIYWLCTVSFTLEDG*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo