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Report for Sequence Feature Glyma.06g196200

Feature Type:gene_model
Chromosome:Gm06
Start:17608369
stop:17614484
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g196200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G61380.1AT CCT motif -containing response regulator protein JGI N/AIEA
GO:0000160GO-bp phosphorelay signal transduction system EnsemblGenomesN/AIEA
GO:0000160GO-bp phosphorelay signal transduction system JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0000156GO-mf phosphorelay response regulator activity JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PTHR26402Panther RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM JGI N/AIEA
PTHR26402:SF303Panther JGI N/AIEA
PF00072PFAM Response regulator receiver domain JGI N/AIEA
PF06203PFAM CCT motif JGI N/AIEA

Proteins Associated with Glyma.06g196200
LocusGene SymbolProtein Name
TOC1 timing of CAB expression 1

Expression Patterns of Glyma.06g196200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g196200
ParalogEvidenceComments
Glyma.04g166300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g196200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g21120 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g196200
>Glyma.06g196200.2 sequence-type=transcript locus=Glyma.06g196200 ID=Glyma.06g196200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ccaaaatcccctaaacataatcctttaagtgctgaggtggtttggttttccttttgggtctgtcaccatgctcttgctgagTTACCTTGGTAAAGTCGGCAAGACAGGTAATTGATGCACTGAATGCAGAAGGGCAACATATAGATATCATACTGGCTGAACTTGACCTTCCGATGAAGAAGGGTATGAAGATGTTGAAGTACATAGCACGTGATAAAGAGTTTCGCAGAATCCCTGTTATAATGATGTCCGCACAAGATGAGGTATCCATTGTTGTTAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACGCACATGTGGAGACGGAGGCGCATGCTTGGACTTGTAGAGAAGAACATCTTGAATTACGATTTTGATCTGGTAGTATCTGACCCTAGTGATGCCAACACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAGAGAAGCACTAATCCAGAGGCAGGAATATCAGTCCAACAAGAACAAGAGTCTACTATTGCAAATGCTGCTGCTGTTGAGGGACCTCCAGATGCTCATGCATCAGAATGTGGGCCTGATGTGGATGGAGTTAATGATCACCAAACAGCACATTTTTCATCTGGTCCGAAGAAGAGTGAACTAAGGATAGGGGAGTCATCAGCCTTCTTCACGTATGTTAAAGCATCAATACTTAAGAGCAACTTCGAAGGGGTTGTTAATGTAGACAACAATGGTGCTACGCATGTTGGGATGGAAGTTATGCATCAAGCATGTGCTCAACAAGGGGTGAATAGCCTTCAAATACTGGAAAATGGAGAGGCATGTGAAAGTCAATCGCAAGATGACTTACCCAGCAGCACTAGTATTCCTGATTCTTTGTCTATTGAGAGGTCTTGTACTCCACCTGCATCAATGGAAGTTTCACAGCAAAAGCACTACAGGGAAGAAAATTCACAACAGGGTGTGATGCATCCCAGAAATGGGACCCATTGTTCCGAGCATGAAGTATCTGGCATGGCTTCCCAACATGCTTATCCATATTATATTTCAGGGGTTGTTAATCATGTTATGATGCCTTCATCAGCACAAATGTATCATCAAAAGAATATCCAGGACCTACAGAATCATACTAGCACAGCTATGATTTCACAATACAATCATCTTCCCCAAGGCGGTCCTCATGGAACGGGGATGACATCCTTCCCATACTACCCAATGAGCATATGCTTACAACCTGGTCAGATTCCTAATCCTCATTCATGGCAATCATTTGGAAACTCAAGTCCATCAGAAGCCAAATTAATTAAAGTTGATAGGAGAGAAGCAGCATTGATGAAATTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTACATTAACAGGAAACGACTTGCTGAAAGGCGGCCTCGTGTAAGGGGACAGTTTGTCAGAAAGTTGAACGGTGCTAATGTGGATCTTAACGGGGAGCCTGCATCAATTGACTATGACGAAGATGACGAAGAGGATGAAGATGACCAGGGAGCAAGAGATTCTTCTCCTGAGGATGCTTGAGCATGTCAAATTGCTATTTTGACTTAAGGATGAAGGGCCAATCAATTCCTTCTTGCAACTAATATTGGCTGTCAAAAGAACTCCTTGCTTTGGAAAGTTCTCACCAAAGCATCAATTTATGAGCTTGTGCTCATGTATTTGGGGTGTTGATCCAATATGCACATTTATGGTTGAAACGAGCTCATTCTGGACATTTTTTAATAGCAGTTCATCAAATGATCCGTACTATTGAGCTATTGCGTAAGGTATTTTACCTCCTGGTGGTTATGTCCAATTCAGTTGAAAGTATCACCCCTGCGTTTTATATTGAATCCGTTACAAGCAGGTTGTTCCTGCTTATTTTCTGGAGAAATGTCAAGACATCTTTAAAAAATTGAACTGAGAAATGAGTTATTT
Coding sequences of Glyma.06g196200
>Glyma.06g196200.1 sequence-type=CDS polypeptide=Glyma.06g196200.1.p locus=Glyma.06g196200 ID=Glyma.06g196200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGTCTGGTGAGGAGATTAATTTGAACATAGAGAGTGGTGGGAAGAGTGGTGGTGATGGGTTCATTGATAGGAGTAAGGTGCGGATTTTGTTGTGCGATAACGATTCCAAGAGTTCTCAAGAGGTTTTCACGCTTCTTTTGAGGTGTTCTTATCAGGTTACCTTGGTAAAGTCGGCAAGACAGGTAATTGATGCACTGAATGCAGAAGGGCAACATATAGATATCATACTGGCTGAACTTGACCTTCCGATGAAGAAGGGTATGAAGATGTTGAAGTACATAGCACGTGATAAAGAGTTTCGCAGAATCCCTGTTATAATGATGTCCGCACAAGATGAGGTATCCATTGTTGTTAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACGCACATGTGGAGACGGAGGCGCATGCTTGGACTTGTAGAGAAGAACATCTTGAATTACGATTTTGATCTGGTAGTATCTGACCCTAGTGATGCCAACACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAGAGAAGCACTAATCCAGAGGCAGGAATATCAGTCCAACAAGAACAAGAGTCTACTATTGCAAATGCTGCTGCTGTTGAGGGACCTCCAGATGCTCATGCATCAGAATGTGGGCCTGATGTGGATGGAGTTAATGATCACCAAACAGCACATTTTTCATCTGGTCCGAAGAAGAGTGAACTAAGGATAGGGGAGTCATCAGCCTTCTTCACGTATGTTAAAGCATCAATACTTAAGAGCAACTTCGAAGGGGTTGTTAATGTAGACAACAATGGTGCTACGCATGTTGGGATGGAAGTTATGCATCAAGCATGTGCTCAACAAGGGGTGAATAGCCTTCAAATACTGGAAAATGGAGAGGCATGTGAAAGTCAATCGCAAGATGACTTACCCAGCAGCACTAGTATTCCTGATTCTTTGTCTATTGAGAGGTCTTGTACTCCACCTGCATCAATGGAAGTTTCACAGCAAAAGCACTACAGGGAAGAAAATTCACAACAGGGTGTGATGCATCCCAGAAATGGGACCCATTGTTCCGAGCATGAAGTATCTGGCATGGCTTCCCAACATGCTTATCCATATTATATTTCAGGGGTTGTTAATCATGTTATGATGCCTTCATCAGCACAAATGTATCATCAAAAGAATATCCAGGACCTACAGAATCATACTAGCACAGCTATGATTTCACAATACAATCATCTTCCCCAAGGCGGTCCTCATGGAACGGGGATGACATCCTTCCCATACTACCCAATGAGCATATGCTTACAACCTGGTCAGATTCCTAATCCTCATTCATGGCAATCATTTGGAAACTCAAGTCCATCAGAAGCCAAATTAATTAAAGTTGATAGGAGAGAAGCAGCATTGATGAAATTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTACATTAACAGGAAACGACTTGCTGAAAGGCGGCCTCGTGTAAGGGGACAGTTTGTCAGAAAGTTGAACGGTGCTAATGTGGATCTTAACGGGGAGCCTGCATCAATTGACTATGACGAAGATGACGAAGAGGATGAAGATGACCAGGGAGCAAGAGATTCTTCTCCTGAGGATGCTTGA

>Glyma.06g196200.2 sequence-type=CDS polypeptide=Glyma.06g196200.2.p locus=Glyma.06g196200 ID=Glyma.06g196200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGAAGGGTATGAAGATGTTGAAGTACATAGCACGTGATAAAGAGTTTCGCAGAATCCCTGTTATAATGATGTCCGCACAAGATGAGGTATCCATTGTTGTTAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACGCACATGTGGAGACGGAGGCGCATGCTTGGACTTGTAGAGAAGAACATCTTGAATTACGATTTTGATCTGGTAGTATCTGACCCTAGTGATGCCAACACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAGAGAAGCACTAATCCAGAGGCAGGAATATCAGTCCAACAAGAACAAGAGTCTACTATTGCAAATGCTGCTGCTGTTGAGGGACCTCCAGATGCTCATGCATCAGAATGTGGGCCTGATGTGGATGGAGTTAATGATCACCAAACAGCACATTTTTCATCTGGTCCGAAGAAGAGTGAACTAAGGATAGGGGAGTCATCAGCCTTCTTCACGTATGTTAAAGCATCAATACTTAAGAGCAACTTCGAAGGGGTTGTTAATGTAGACAACAATGGTGCTACGCATGTTGGGATGGAAGTTATGCATCAAGCATGTGCTCAACAAGGGGTGAATAGCCTTCAAATACTGGAAAATGGAGAGGCATGTGAAAGTCAATCGCAAGATGACTTACCCAGCAGCACTAGTATTCCTGATTCTTTGTCTATTGAGAGGTCTTGTACTCCACCTGCATCAATGGAAGTTTCACAGCAAAAGCACTACAGGGAAGAAAATTCACAACAGGGTGTGATGCATCCCAGAAATGGGACCCATTGTTCCGAGCATGAAGTATCTGGCATGGCTTCCCAACATGCTTATCCATATTATATTTCAGGGGTTGTTAATCATGTTATGATGCCTTCATCAGCACAAATGTATCATCAAAAGAATATCCAGGACCTACAGAATCATACTAGCACAGCTATGATTTCACAATACAATCATCTTCCCCAAGGCGGTCCTCATGGAACGGGGATGACATCCTTCCCATACTACCCAATGAGCATATGCTTACAACCTGGTCAGATTCCTAATCCTCATTCATGGCAATCATTTGGAAACTCAAGTCCATCAGAAGCCAAATTAATTAAAGTTGATAGGAGAGAAGCAGCATTGATGAAATTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTACATTAACAGGAAACGACTTGCTGAAAGGCGGCCTCGTGTAAGGGGACAGTTTGTCAGAAAGTTGAACGGTGCTAATGTGGATCTTAACGGGGAGCCTGCATCAATTGACTATGACGAAGATGACGAAGAGGATGAAGATGACCAGGGAGCAAGAGATTCTTCTCCTGAGGATGCTTGA
Predicted protein sequences of Glyma.06g196200
>Glyma.06g196200.1.p sequence-type=predicted peptide transcript=Glyma.06g196200.1 locus=Glyma.06g196200 ID=Glyma.06g196200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MESGEEINLNIESGGKSGGDGFIDRSKVRILLCDNDSKSSQEVFTLLLRCSYQVTLVKSARQVIDALNAEGQHIDIILAELDLPMKKGMKMLKYIARDKEFRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNILNYDFDLVVSDPSDANTNSTTLFSDDTDDKSKRSTNPEAGISVQQEQESTIANAAAVEGPPDAHASECGPDVDGVNDHQTAHFSSGPKKSELRIGESSAFFTYVKASILKSNFEGVVNVDNNGATHVGMEVMHQACAQQGVNSLQILENGEACESQSQDDLPSSTSIPDSLSIERSCTPPASMEVSQQKHYREENSQQGVMHPRNGTHCSEHEVSGMASQHAYPYYISGVVNHVMMPSSAQMYHQKNIQDLQNHTSTAMISQYNHLPQGGPHGTGMTSFPYYPMSICLQPGQIPNPHSWQSFGNSSPSEAKLIKVDRREAALMKFRQKRKERCFDKKIRYINRKRLAERRPRVRGQFVRKLNGANVDLNGEPASIDYDEDDEEDEDDQGARDSSPEDA*

>Glyma.06g196200.2.p sequence-type=predicted peptide transcript=Glyma.06g196200.2 locus=Glyma.06g196200 ID=Glyma.06g196200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKKGMKMLKYIARDKEFRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNILNYDFDLVVSDPSDANTNSTTLFSDDTDDKSKRSTNPEAGISVQQEQESTIANAAAVEGPPDAHASECGPDVDGVNDHQTAHFSSGPKKSELRIGESSAFFTYVKASILKSNFEGVVNVDNNGATHVGMEVMHQACAQQGVNSLQILENGEACESQSQDDLPSSTSIPDSLSIERSCTPPASMEVSQQKHYREENSQQGVMHPRNGTHCSEHEVSGMASQHAYPYYISGVVNHVMMPSSAQMYHQKNIQDLQNHTSTAMISQYNHLPQGGPHGTGMTSFPYYPMSICLQPGQIPNPHSWQSFGNSSPSEAKLIKVDRREAALMKFRQKRKERCFDKKIRYINRKRLAERRPRVRGQFVRKLNGANVDLNGEPASIDYDEDDEEDEDDQGARDSSPEDA*






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