Glyma.06g185500

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.06g185500): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.06g185500): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.06g185500

Feature Type:	gene_model
Chromosome:	Gm06
Start:	16114111
stop:	16119696
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.06g185500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G40280.1	AT	Prenyltransferase family protein	JGI	N/A	IEA
GO:0018343	GO-bp	protein farnesylation	EnsemblGenomes	N/A	IEA
GO:0042127	GO-bp	regulation of cell proliferation	EnsemblGenomes	N/A	IEA
GO:0005965	GO-cc	protein farnesyltransferase complex	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	JGI	N/A	IEA
GO:0004660	GO-mf	protein farnesyltransferase activity	EnsemblGenomes	N/A	IEA
KOG0365	KOG	Beta subunit of farnesyltransferase	JGI	N/A	IEA
PTHR11774	Panther	GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT	JGI	N/A	IEA
PTHR11774:SF6	Panther	PROTEIN FARNESYLTRANSFERASE SUBUNIT BETA	JGI	N/A	IEA
PF00432	PFAM	Prenyltransferase and squalene oxidase repeat	JGI	N/A	IEA

Proteins Associated with Glyma.06g185500

Locus	Gene Symbol	Protein Name
	ERA1A	farnesyltransferase

Expression Patterns of Glyma.06g185500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g185500 not represented in the dataset	Glyma.06g185500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.06g185500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma06g19740	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.06g185500

Limit To All Plant Sequences

>Glyma.06g185500.2 sequence-type=transcript locus=Glyma.06g185500 ID=Glyma.06g185500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACAAAACTAACTAAACTAAAATATTATATAAAAGCTAGTGTTTTAGTAAAAAAAAAAAACTAAACTAAGTTAAAAGATTAGTGAAGATAGTGTAGTAAGTGCTAACAAAACAAGCTTGACTCTTAAACTCTCGCAGTTTCTGGCGAAACCATGAGTGAAGAGAGCGAGAGAGATACGAATCCGGCGGCGGCGCCACCGTGTCCGACGGTGAGTCAACGGGACCAGTGGATGGTAGAGTCGCAGGTGTTTCAGATTTACCAACTCTTTGCCACCATTCCTGGCAGCGCCCAAAACCTCATGTTAGAGCTGCAACGCGATAATCACATGCAGTATCTCTCCAAAGGCCTACGCCATCTCAGTTCCGCGTTTTCTGTCTTGGACGCTAATCGACCCTGGCTCTGTTACTGGATCTTCCATTCCATTGCTTTGCTGGGAGAATCCGTCGACGACGAACTCGAAGATAACACTATCGATTTTCTTAACCGTTGCCAGGATCCGAATGGTGGATATGCTGGGGGACCAGGCCAGATGCCTCACATTGCCACAACATATGCTGCAGTTAATACACTTATTACTTTGGGTGGTCAGAAATCCCTGGCATCAATTAATAGAGATAAACTGTATGGGTTTCTGCGGCGGATGAAGCAATCAAATGGGGGATTCAGGATGCATGATGAAGGAGAAATTGATGTTCGAGCTTGCTACACTGCCATTTCTGTTGCAAGTGTTTTGAACATTTTGGATGATGAGCTGATCAAGAATGTTGGAGACTACATTTTAAGCTGTCAAACATATGAGGGTGGCATTGCAGGTGAACCTGGTTCTGAGGCTCATGGTGGGTACACCTTTTGTGGATTAGCTACAATGATTCTGATTGGTGAGGTTAATCGCTTGGATCTGCCTCGACTAGTTGAATGGGCGGTATTCCGGCAAGGTAAGGAATGTGGATTCCAGGGGAGAACAAATAAATTGGTGGATGGATGCTATTCCTTTTGGCAGGGAGGTGCCGTTGCTCTATTGCAAAGATTATCTTCCATTATCAATAAACAAATGGAAGAGGCATCACAGACTTTTACGATATCTGATGTATCTGAAGCAAAAGAAAGTTTGGATGGGACCTCTAGTCATGCAACATGCCATGGTAAGCATGAAGGCACTAGTCAGTCCTGTTCAGCTGATTATAAAAGTATCGGTTATAACTTTATTAATGAGTGGAGAGCACAAGAACCACTTTTTCACAGCATTGCTTTACAGCAATATATTCTCTTATGTGCACAGGAGCAAGCGGGTGGACTGAGAGACAAACCGGGTAAACGTAGAGATCACTATCACACATGTTACTGTTTAAGTGGACTCTCATTGTGCCAGTATAGCTGGTCAAAGCACCCAGATTCTCCACCGCTGCCTAACCTAGTATTGGGCCCCTACTCTAATCTCTTAGAACCAATCCATCCCCTCTTTAATGTTGTCTTGGAACGATATCGTGAAGCTCATGTATTCTTCTTTACTGAGTCCTGACCACTGACCTGGTTTTAGCTGCCAACATCTTTATGTATACTGTAAAATAAATTCATTGGATTTGGAAAAATGCATATAAATGTAAAACAGCATTGGATTGATAGGTTTTATGTCTCCGGGTTTTGATGATTATTGATAATTTGACATGGATATGTACTGTTCCGAATGGCAAGATGTGATCTGTAACTTATCTCATTTAGTGGGATAATACTTTGTTGTTGTGAAT

Coding sequences of Glyma.06g185500

Limit To All Plant Sequences

>Glyma.06g185500.1 sequence-type=CDS polypeptide=Glyma.06g185500.1.p locus=Glyma.06g185500 ID=Glyma.06g185500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGAAGAGAGCGAGAGAGATACGAATCCGGCGGCGGCGCCACCGTGTCCGACGGTGAGTCAACGGGACCAGTGGATGGTAGAGTCGCAGGTGTTTCAGATTTACCAACTCTTTGCCACCATTCCTGGCAGCGCCCAAAACCTCATGTATCTATCACAGTTAGAGCTGCAACGCGATAATCACATGCAGTATCTCTCCAAAGGCCTACGCCATCTCAGTTCCGCGTTTTCTGTCTTGGACGCTAATCGACCCTGGCTCTGTTACTGGATCTTCCATTCCATTGCTTTGCTGGGAGAATCCGTCGACGACGAACTCGAAGATAACACTATCGATTTTCTTAACCGTTGCCAGGATCCGAATGGTGGATATGCTGGGGGACCAGGCCAGATGCCTCACATTGCCACAACATATGCTGCAGTTAATACACTTATTACTTTGGGTGGTCAGAAATCCCTGGCATCAATTAATAGAGATAAACTGTATGGGTTTCTGCGGCGGATGAAGCAATCAAATGGGGGATTCAGGATGCATGATGAAGGAGAAATTGATGTTCGAGCTTGCTACACTGCCATTTCTGTTGCAAGTGTTTTGAACATTTTGGATGATGAGCTGATCAAGAATGTTGGAGACTACATTTTAAGCTGTCAAACATATGAGGGTGGCATTGCAGGTGAACCTGGTTCTGAGGCTCATGGTGGGTACACCTTTTGTGGATTAGCTACAATGATTCTGATTGGTGAGGTTAATCGCTTGGATCTGCCTCGACTAGTTGAATGGGCGGTATTCCGGCAAGGTAAGGAATGTGGATTCCAGGGGAGAACAAATAAATTGGTGGATGGATGCTATTCCTTTTGGCAGGGAGGTGCCGTTGCTCTATTGCAAAGATTATCTTCCATTATCAATAAACAAATGGAAGAGGCATCACAGACTTTTACGATATCTGATGTATCTGAAGCAAAAGAAAGTTTGGATGGGACCTCTAGTCATGCAACATGCCATGGTAAGCATGAAGGCACTAGTCAGTCCTGTTCAGCTGATTATAAAAGTATCGGTTATAACTTTATTAATGAGTGGAGAGCACAAGAACCACTTTTTCACAGCATTGCTTTACAGCAATATATTCTCTTATGTGCACAGGAGCAAGCGGGTGGACTGAGAGACAAACCGGGTAAACGTAGAGATCACTATCACACATGTTACTGTTTAAGTGGACTCTCATTGTGCCAGTATAGCTGGTCAAAGCACCCAGATTCTCCACCGCTGCCTAACCTAGTATTGGGCCCCTACTCTAATCTCTTAGAACCAATCCATCCCCTCTTTAATGTTGTCTTGGAACGATATCGTGAAGCTCATGTATTCTTCTTTACTGAGTCCTGA

>Glyma.06g185500.2 sequence-type=CDS polypeptide=Glyma.06g185500.2.p locus=Glyma.06g185500 ID=Glyma.06g185500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGAAGAGAGCGAGAGAGATACGAATCCGGCGGCGGCGCCACCGTGTCCGACGGTGAGTCAACGGGACCAGTGGATGGTAGAGTCGCAGGTGTTTCAGATTTACCAACTCTTTGCCACCATTCCTGGCAGCGCCCAAAACCTCATGTTAGAGCTGCAACGCGATAATCACATGCAGTATCTCTCCAAAGGCCTACGCCATCTCAGTTCCGCGTTTTCTGTCTTGGACGCTAATCGACCCTGGCTCTGTTACTGGATCTTCCATTCCATTGCTTTGCTGGGAGAATCCGTCGACGACGAACTCGAAGATAACACTATCGATTTTCTTAACCGTTGCCAGGATCCGAATGGTGGATATGCTGGGGGACCAGGCCAGATGCCTCACATTGCCACAACATATGCTGCAGTTAATACACTTATTACTTTGGGTGGTCAGAAATCCCTGGCATCAATTAATAGAGATAAACTGTATGGGTTTCTGCGGCGGATGAAGCAATCAAATGGGGGATTCAGGATGCATGATGAAGGAGAAATTGATGTTCGAGCTTGCTACACTGCCATTTCTGTTGCAAGTGTTTTGAACATTTTGGATGATGAGCTGATCAAGAATGTTGGAGACTACATTTTAAGCTGTCAAACATATGAGGGTGGCATTGCAGGTGAACCTGGTTCTGAGGCTCATGGTGGGTACACCTTTTGTGGATTAGCTACAATGATTCTGATTGGTGAGGTTAATCGCTTGGATCTGCCTCGACTAGTTGAATGGGCGGTATTCCGGCAAGGTAAGGAATGTGGATTCCAGGGGAGAACAAATAAATTGGTGGATGGATGCTATTCCTTTTGGCAGGGAGGTGCCGTTGCTCTATTGCAAAGATTATCTTCCATTATCAATAAACAAATGGAAGAGGCATCACAGACTTTTACGATATCTGATGTATCTGAAGCAAAAGAAAGTTTGGATGGGACCTCTAGTCATGCAACATGCCATGGTAAGCATGAAGGCACTAGTCAGTCCTGTTCAGCTGATTATAAAAGTATCGGTTATAACTTTATTAATGAGTGGAGAGCACAAGAACCACTTTTTCACAGCATTGCTTTACAGCAATATATTCTCTTATGTGCACAGGAGCAAGCGGGTGGACTGAGAGACAAACCGGGTAAACGTAGAGATCACTATCACACATGTTACTGTTTAAGTGGACTCTCATTGTGCCAGTATAGCTGGTCAAAGCACCCAGATTCTCCACCGCTGCCTAACCTAGTATTGGGCCCCTACTCTAATCTCTTAGAACCAATCCATCCCCTCTTTAATGTTGTCTTGGAACGATATCGTGAAGCTCATGTATTCTTCTTTACTGAGTCCTGA

Predicted protein sequences of Glyma.06g185500

Limit To All Plant Sequences

>Glyma.06g185500.1.p sequence-type=predicted peptide transcript=Glyma.06g185500.1 locus=Glyma.06g185500 ID=Glyma.06g185500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSEESERDTNPAAAPPCPTVSQRDQWMVESQVFQIYQLFATIPGSAQNLMYLSQLELQRDNHMQYLSKGLRHLSSAFSVLDANRPWLCYWIFHSIALLGESVDDELEDNTIDFLNRCQDPNGGYAGGPGQMPHIATTYAAVNTLITLGGQKSLASINRDKLYGFLRRMKQSNGGFRMHDEGEIDVRACYTAISVASVLNILDDELIKNVGDYILSCQTYEGGIAGEPGSEAHGGYTFCGLATMILIGEVNRLDLPRLVEWAVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLSSIINKQMEEASQTFTISDVSEAKESLDGTSSHATCHGKHEGTSQSCSADYKSIGYNFINEWRAQEPLFHSIALQQYILLCAQEQAGGLRDKPGKRRDHYHTCYCLSGLSLCQYSWSKHPDSPPLPNLVLGPYSNLLEPIHPLFNVVLERYREAHVFFFTES*

>Glyma.06g185500.2.p sequence-type=predicted peptide transcript=Glyma.06g185500.2 locus=Glyma.06g185500 ID=Glyma.06g185500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSEESERDTNPAAAPPCPTVSQRDQWMVESQVFQIYQLFATIPGSAQNLMLELQRDNHMQYLSKGLRHLSSAFSVLDANRPWLCYWIFHSIALLGESVDDELEDNTIDFLNRCQDPNGGYAGGPGQMPHIATTYAAVNTLITLGGQKSLASINRDKLYGFLRRMKQSNGGFRMHDEGEIDVRACYTAISVASVLNILDDELIKNVGDYILSCQTYEGGIAGEPGSEAHGGYTFCGLATMILIGEVNRLDLPRLVEWAVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLSSIINKQMEEASQTFTISDVSEAKESLDGTSSHATCHGKHEGTSQSCSADYKSIGYNFINEWRAQEPLFHSIALQQYILLCAQEQAGGLRDKPGKRRDHYHTCYCLSGLSLCQYSWSKHPDSPPLPNLVLGPYSNLLEPIHPLFNVVLERYREAHVFFFTES*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain