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Report for Sequence Feature Glyma.06g185500

Feature Type:gene_model
Chromosome:Gm06
Start:16114111
stop:16119696
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g185500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G40280.1AT Prenyltransferase family protein JGI N/AIEA
GO:0018343GO-bp protein farnesylation EnsemblGenomesN/AIEA
GO:0042127GO-bp regulation of cell proliferation EnsemblGenomesN/AIEA
GO:0005965GO-cc protein farnesyltransferase complex EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0004660GO-mf protein farnesyltransferase activity EnsemblGenomesN/AIEA
KOG0365 KOG Beta subunit of farnesyltransferase JGI N/AIEA
PTHR11774Panther GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT JGI N/AIEA
PTHR11774:SF6Panther PROTEIN FARNESYLTRANSFERASE SUBUNIT BETA JGI N/AIEA
PF00432PFAM Prenyltransferase and squalene oxidase repeat JGI N/AIEA

Proteins Associated with Glyma.06g185500
LocusGene SymbolProtein Name
ERA1A farnesyltransferase

Expression Patterns of Glyma.06g185500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g185500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g19740 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g185500
>Glyma.06g185500.2 sequence-type=transcript locus=Glyma.06g185500 ID=Glyma.06g185500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACAAAACTAACTAAACTAAAATATTATATAAAAGCTAGTGTTTTAGTAAAAAAAAAAAACTAAACTAAGTTAAAAGATTAGTGAAGATAGTGTAGTAAGTGCTAACAAAACAAGCTTGACTCTTAAACTCTCGCAGTTTCTGGCGAAACCATGAGTGAAGAGAGCGAGAGAGATACGAATCCGGCGGCGGCGCCACCGTGTCCGACGGTGAGTCAACGGGACCAGTGGATGGTAGAGTCGCAGGTGTTTCAGATTTACCAACTCTTTGCCACCATTCCTGGCAGCGCCCAAAACCTCATGTTAGAGCTGCAACGCGATAATCACATGCAGTATCTCTCCAAAGGCCTACGCCATCTCAGTTCCGCGTTTTCTGTCTTGGACGCTAATCGACCCTGGCTCTGTTACTGGATCTTCCATTCCATTGCTTTGCTGGGAGAATCCGTCGACGACGAACTCGAAGATAACACTATCGATTTTCTTAACCGTTGCCAGGATCCGAATGGTGGATATGCTGGGGGACCAGGCCAGATGCCTCACATTGCCACAACATATGCTGCAGTTAATACACTTATTACTTTGGGTGGTCAGAAATCCCTGGCATCAATTAATAGAGATAAACTGTATGGGTTTCTGCGGCGGATGAAGCAATCAAATGGGGGATTCAGGATGCATGATGAAGGAGAAATTGATGTTCGAGCTTGCTACACTGCCATTTCTGTTGCAAGTGTTTTGAACATTTTGGATGATGAGCTGATCAAGAATGTTGGAGACTACATTTTAAGCTGTCAAACATATGAGGGTGGCATTGCAGGTGAACCTGGTTCTGAGGCTCATGGTGGGTACACCTTTTGTGGATTAGCTACAATGATTCTGATTGGTGAGGTTAATCGCTTGGATCTGCCTCGACTAGTTGAATGGGCGGTATTCCGGCAAGGTAAGGAATGTGGATTCCAGGGGAGAACAAATAAATTGGTGGATGGATGCTATTCCTTTTGGCAGGGAGGTGCCGTTGCTCTATTGCAAAGATTATCTTCCATTATCAATAAACAAATGGAAGAGGCATCACAGACTTTTACGATATCTGATGTATCTGAAGCAAAAGAAAGTTTGGATGGGACCTCTAGTCATGCAACATGCCATGGTAAGCATGAAGGCACTAGTCAGTCCTGTTCAGCTGATTATAAAAGTATCGGTTATAACTTTATTAATGAGTGGAGAGCACAAGAACCACTTTTTCACAGCATTGCTTTACAGCAATATATTCTCTTATGTGCACAGGAGCAAGCGGGTGGACTGAGAGACAAACCGGGTAAACGTAGAGATCACTATCACACATGTTACTGTTTAAGTGGACTCTCATTGTGCCAGTATAGCTGGTCAAAGCACCCAGATTCTCCACCGCTGCCTAACCTAGTATTGGGCCCCTACTCTAATCTCTTAGAACCAATCCATCCCCTCTTTAATGTTGTCTTGGAACGATATCGTGAAGCTCATGTATTCTTCTTTACTGAGTCCTGACCACTGACCTGGTTTTAGCTGCCAACATCTTTATGTATACTGTAAAATAAATTCATTGGATTTGGAAAAATGCATATAAATGTAAAACAGCATTGGATTGATAGGTTTTATGTCTCCGGGTTTTGATGATTATTGATAATTTGACATGGATATGTACTGTTCCGAATGGCAAGATGTGATCTGTAACTTATCTCATTTAGTGGGATAATACTTTGTTGTTGTGAAT
Coding sequences of Glyma.06g185500
>Glyma.06g185500.1 sequence-type=CDS polypeptide=Glyma.06g185500.1.p locus=Glyma.06g185500 ID=Glyma.06g185500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGAAGAGAGCGAGAGAGATACGAATCCGGCGGCGGCGCCACCGTGTCCGACGGTGAGTCAACGGGACCAGTGGATGGTAGAGTCGCAGGTGTTTCAGATTTACCAACTCTTTGCCACCATTCCTGGCAGCGCCCAAAACCTCATGTATCTATCACAGTTAGAGCTGCAACGCGATAATCACATGCAGTATCTCTCCAAAGGCCTACGCCATCTCAGTTCCGCGTTTTCTGTCTTGGACGCTAATCGACCCTGGCTCTGTTACTGGATCTTCCATTCCATTGCTTTGCTGGGAGAATCCGTCGACGACGAACTCGAAGATAACACTATCGATTTTCTTAACCGTTGCCAGGATCCGAATGGTGGATATGCTGGGGGACCAGGCCAGATGCCTCACATTGCCACAACATATGCTGCAGTTAATACACTTATTACTTTGGGTGGTCAGAAATCCCTGGCATCAATTAATAGAGATAAACTGTATGGGTTTCTGCGGCGGATGAAGCAATCAAATGGGGGATTCAGGATGCATGATGAAGGAGAAATTGATGTTCGAGCTTGCTACACTGCCATTTCTGTTGCAAGTGTTTTGAACATTTTGGATGATGAGCTGATCAAGAATGTTGGAGACTACATTTTAAGCTGTCAAACATATGAGGGTGGCATTGCAGGTGAACCTGGTTCTGAGGCTCATGGTGGGTACACCTTTTGTGGATTAGCTACAATGATTCTGATTGGTGAGGTTAATCGCTTGGATCTGCCTCGACTAGTTGAATGGGCGGTATTCCGGCAAGGTAAGGAATGTGGATTCCAGGGGAGAACAAATAAATTGGTGGATGGATGCTATTCCTTTTGGCAGGGAGGTGCCGTTGCTCTATTGCAAAGATTATCTTCCATTATCAATAAACAAATGGAAGAGGCATCACAGACTTTTACGATATCTGATGTATCTGAAGCAAAAGAAAGTTTGGATGGGACCTCTAGTCATGCAACATGCCATGGTAAGCATGAAGGCACTAGTCAGTCCTGTTCAGCTGATTATAAAAGTATCGGTTATAACTTTATTAATGAGTGGAGAGCACAAGAACCACTTTTTCACAGCATTGCTTTACAGCAATATATTCTCTTATGTGCACAGGAGCAAGCGGGTGGACTGAGAGACAAACCGGGTAAACGTAGAGATCACTATCACACATGTTACTGTTTAAGTGGACTCTCATTGTGCCAGTATAGCTGGTCAAAGCACCCAGATTCTCCACCGCTGCCTAACCTAGTATTGGGCCCCTACTCTAATCTCTTAGAACCAATCCATCCCCTCTTTAATGTTGTCTTGGAACGATATCGTGAAGCTCATGTATTCTTCTTTACTGAGTCCTGA

>Glyma.06g185500.2 sequence-type=CDS polypeptide=Glyma.06g185500.2.p locus=Glyma.06g185500 ID=Glyma.06g185500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGAAGAGAGCGAGAGAGATACGAATCCGGCGGCGGCGCCACCGTGTCCGACGGTGAGTCAACGGGACCAGTGGATGGTAGAGTCGCAGGTGTTTCAGATTTACCAACTCTTTGCCACCATTCCTGGCAGCGCCCAAAACCTCATGTTAGAGCTGCAACGCGATAATCACATGCAGTATCTCTCCAAAGGCCTACGCCATCTCAGTTCCGCGTTTTCTGTCTTGGACGCTAATCGACCCTGGCTCTGTTACTGGATCTTCCATTCCATTGCTTTGCTGGGAGAATCCGTCGACGACGAACTCGAAGATAACACTATCGATTTTCTTAACCGTTGCCAGGATCCGAATGGTGGATATGCTGGGGGACCAGGCCAGATGCCTCACATTGCCACAACATATGCTGCAGTTAATACACTTATTACTTTGGGTGGTCAGAAATCCCTGGCATCAATTAATAGAGATAAACTGTATGGGTTTCTGCGGCGGATGAAGCAATCAAATGGGGGATTCAGGATGCATGATGAAGGAGAAATTGATGTTCGAGCTTGCTACACTGCCATTTCTGTTGCAAGTGTTTTGAACATTTTGGATGATGAGCTGATCAAGAATGTTGGAGACTACATTTTAAGCTGTCAAACATATGAGGGTGGCATTGCAGGTGAACCTGGTTCTGAGGCTCATGGTGGGTACACCTTTTGTGGATTAGCTACAATGATTCTGATTGGTGAGGTTAATCGCTTGGATCTGCCTCGACTAGTTGAATGGGCGGTATTCCGGCAAGGTAAGGAATGTGGATTCCAGGGGAGAACAAATAAATTGGTGGATGGATGCTATTCCTTTTGGCAGGGAGGTGCCGTTGCTCTATTGCAAAGATTATCTTCCATTATCAATAAACAAATGGAAGAGGCATCACAGACTTTTACGATATCTGATGTATCTGAAGCAAAAGAAAGTTTGGATGGGACCTCTAGTCATGCAACATGCCATGGTAAGCATGAAGGCACTAGTCAGTCCTGTTCAGCTGATTATAAAAGTATCGGTTATAACTTTATTAATGAGTGGAGAGCACAAGAACCACTTTTTCACAGCATTGCTTTACAGCAATATATTCTCTTATGTGCACAGGAGCAAGCGGGTGGACTGAGAGACAAACCGGGTAAACGTAGAGATCACTATCACACATGTTACTGTTTAAGTGGACTCTCATTGTGCCAGTATAGCTGGTCAAAGCACCCAGATTCTCCACCGCTGCCTAACCTAGTATTGGGCCCCTACTCTAATCTCTTAGAACCAATCCATCCCCTCTTTAATGTTGTCTTGGAACGATATCGTGAAGCTCATGTATTCTTCTTTACTGAGTCCTGA
Predicted protein sequences of Glyma.06g185500
>Glyma.06g185500.1.p sequence-type=predicted peptide transcript=Glyma.06g185500.1 locus=Glyma.06g185500 ID=Glyma.06g185500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSEESERDTNPAAAPPCPTVSQRDQWMVESQVFQIYQLFATIPGSAQNLMYLSQLELQRDNHMQYLSKGLRHLSSAFSVLDANRPWLCYWIFHSIALLGESVDDELEDNTIDFLNRCQDPNGGYAGGPGQMPHIATTYAAVNTLITLGGQKSLASINRDKLYGFLRRMKQSNGGFRMHDEGEIDVRACYTAISVASVLNILDDELIKNVGDYILSCQTYEGGIAGEPGSEAHGGYTFCGLATMILIGEVNRLDLPRLVEWAVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLSSIINKQMEEASQTFTISDVSEAKESLDGTSSHATCHGKHEGTSQSCSADYKSIGYNFINEWRAQEPLFHSIALQQYILLCAQEQAGGLRDKPGKRRDHYHTCYCLSGLSLCQYSWSKHPDSPPLPNLVLGPYSNLLEPIHPLFNVVLERYREAHVFFFTES*

>Glyma.06g185500.2.p sequence-type=predicted peptide transcript=Glyma.06g185500.2 locus=Glyma.06g185500 ID=Glyma.06g185500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSEESERDTNPAAAPPCPTVSQRDQWMVESQVFQIYQLFATIPGSAQNLMLELQRDNHMQYLSKGLRHLSSAFSVLDANRPWLCYWIFHSIALLGESVDDELEDNTIDFLNRCQDPNGGYAGGPGQMPHIATTYAAVNTLITLGGQKSLASINRDKLYGFLRRMKQSNGGFRMHDEGEIDVRACYTAISVASVLNILDDELIKNVGDYILSCQTYEGGIAGEPGSEAHGGYTFCGLATMILIGEVNRLDLPRLVEWAVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLSSIINKQMEEASQTFTISDVSEAKESLDGTSSHATCHGKHEGTSQSCSADYKSIGYNFINEWRAQEPLFHSIALQQYILLCAQEQAGGLRDKPGKRRDHYHTCYCLSGLSLCQYSWSKHPDSPPLPNLVLGPYSNLLEPIHPLFNVVLERYREAHVFFFTES*






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