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Report for Sequence Feature Glyma.06g182600

Feature Type:gene_model
Chromosome:Gm06
Start:15654270
stop:15659464
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g182600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G62810.1AT peroxin 14 JGI N/AIEA
GO:0016560GO-bp protein import into peroxisome matrix, docking EnsemblGenomesN/AIEA
GO:0005778GO-cc peroxisomal membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:1990429GO-cc peroxisomal importomer complex EnsemblGenomesN/AIEA
GO:0005102GO-mf signaling receptor binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
KOG2629 KOG Peroxisomal membrane anchor protein (peroxin) JGI N/AIEA
PTHR23058Panther PEROXISOMAL MEMBRANE PROTEIN PEX14 JGI N/AIEA
PF04695PFAM Peroxisomal membrane anchor protein (Pex14p) conserved region JGI N/AIEA

Proteins Associated with Glyma.06g182600
LocusGene SymbolProtein Name
PEX14 peroxisomal membrane protein PEX14

Expression Patterns of Glyma.06g182600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g182600 not represented in the dataset
Glyma.06g182600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g182600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g19390 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g182600
>Glyma.06g182600.2 sequence-type=transcript locus=Glyma.06g182600 ID=Glyma.06g182600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGGTATACTAAACACGATTTATTTTGTCTTTTTTCTTTATCACAGCTGCAATCAACAAGACTTAGAATGCGATGAGCAAAAATAGACCTCAATTCCGAATTCAGAGATAGCACGCACCAGGAGAAGCATGGCTACTCAATCCCCTTCACCTCAGAACCTAGGTGGTGAAATTGAGCAAACAGAAAATGTAGATCAGCATAATAGGGGAGAAGAGCTTGGTAAACAGAGTTCAGACACATCGGTGTTTGTGAACTCAGAGCCATTGCGTGAGGAACAAATTCAGAATGCTGTGAAATTTCTGTCGCACCCGAAAGTTAGAGGTTCTCCTGTCATCCACAGACGATCGTTTCTGGAGAAGAAGGGCCTTACGAAGGAGGAGATTGATGAAGCCTTTCGGCGTGTGCCTGATTCACCTCCAAGTGTGCAGACAGCTGGCATAAATCAAGATGGACAATTGAAGCCATCATCAAACATTCAGCAGCAAGGCCAACCACAGGCTTTGCAGCTGACTGTACCAGCTTCTACTGGTGTTACTACTACGCTTGGAACCTTATCTCGCCGCAGTTTTCACTGGTCACATGCCCTTATTGCAGTTGGATTACTGGCTGCTTCAGGTGCTGGTACAGTTATAGTAATTAAGAATTCTATTCTCCCTCGGTTAAAATCCTGGATACGCAATGTTGTCCTAGAAGAGGATCATGACCAATCAAAGAGAACAGGCTCAAAACCAACATTGgcagaagaagctgcacaggctgcaaaagcagctgcagttgcagctgcTGATATTGCAAAAGCAAGCCAAGAATTACTGAGTTCAAAAATTGAAGAGAAGAGATATTTTGTAGAAGTTGTGAACCTTTTGGATAAGCAAGTGCAGGAAATGAAGTTGATGACTAATGCAATAGGAAGATTGGAAGCTTCTGGTGGACTCTCTGTCTCAAAGCAAGAAGACCGCTTAGTCACTCAAACAGGTTCAAAGACACAGCAACTGATCGTGAATGGGAAGTCAGACTATGAGTCCCGATCAGTGAGATCTTCATCCCCTCCTGTATCTGTTGAACCATCTAGTGCTCCTCATCCTAAATCATATATGGAGATAATGGCCATGATCCAAAGAGGGGAGAAGCCTTCTAACATTAGGGTAAATCTTTTATGCCTTTCAATCTTGATAATTGTAGTTGCATGCCTAAATCATACATCTCATTTGTGTTCCATTGATATAAATTAATAAAATATCGATTGAAATGAAATTTACTAGTAAAATGTGAGACACGAAAGGTGGTGCTACAGTGATGTAAAAGGTTGTAAGTGCAAATAAGAATATTCTTATCCATTAGGCTTACCAATTTTATTGGTCATTGTTAC
Coding sequences of Glyma.06g182600
>Glyma.06g182600.1 sequence-type=CDS polypeptide=Glyma.06g182600.1.p locus=Glyma.06g182600 ID=Glyma.06g182600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACTCAATCCCCTTCACCTCAGAACCTAGGTGGTGAAATTGAGCAAACAGAAAATGTAGATCAGCATAATAGGGGAGAAGAGCTTGGTAAACAGAGTTCAGACACATCGGTGTTTGTGAACTCAGAGCCATTGCGTGAGGAACAAATTCAGAATGCTGTGAAATTTCTGTCGCACCCGAAAGTTAGAGGTTCTCCTGTCATCCACAGACGATCGTTTCTGGAGAAGAAGGGCCTTACGAAGGAGGAGATTGATGAAGCCTTTCGGCGTGTGCCTGATTCACCTCCAAGTGTGCAGACAGCTGGCATAAATCAAGATGGACAATTGAAGCCATCATCAAACATTCAGCAGCAAGGCCAACCACAGGCTTTGCAGCTGACTGTACCAGCTTCTACTGGTGTTACTACTACGCTTGGAACCTTATCTCGCCGCAGTTTTCACTGGTCACATGCCCTTATTGCAGTTGGATTACTGGCTGCTTCAGGTGCTGGTACAGTTATAGTAATTAAGAATTCTATTCTCCCTCGGTTAAAATCCTGGATACGCAATGTTGTCCTAGAAGAGGATCATGACCAATCAAAGAGAACAGGCTCAAAACCAACATTGGCAGAAGAAGCTGCACAGGCTGCAAAAGCAGCTGCAGTTGCAGCTGCTGATATTGCAAAAGCAAGCCAAGAATTACTGAGTTCAAAAATTGAAGAGAAGAGATATTTTGTAGAAGTTGTGAACCTTTTGGATAAGCAAGTGCAGGAAATGAAGTTGATGACTAATGCAATAGGAAGATTGGAAGCTTCTGGTGGACTCTCTGTCTCAAAGCAAGAAGACCGCTTAGTCACTCAAACAGGTTCAAAGACACAGCAACTGATCGTGAATGGGAAGTCAGACTATGAGTCCCGATCAGTGAGATCTTCATCCCCTCCTGTATCTGTTGAACCATCTAGTGCTCCTCATCCTAAATCATATATGGAGATAATGGCCATGATCCAAAGAGGGGAGAAGCCTTCTAACATTAGGGAAATTGATGATTCAGCCCCCAACCCTTATCAGCAACCATCAAATCCTCGCTTAGCACCTAGAGCCAAGCCTTGGGAGGTTAGTCAGGTGCAAAACACCTCAACCCAAGTCCTTCCGTATCAAGTAAATGGCAAGATCCAAGATAATGGTGACAACACAGTACCCTGGTGGCAAACAAAGAACGTCAGAATCAAAGAGATCGATAATGAAATTGAGTATAATGGAGCACCTGCTGCATCCAGTCCGCAGCCAGTCCAACGAGCGTGGGTTCCTCCTCAGCCTCCTCCTATAGCAATGCCAGAGGCTGCAGAAGCGATCAGACGCCCAAAGCAGGGTAGTCCAAAAGGAAGTGACACTGGATGA

>Glyma.06g182600.2 sequence-type=CDS polypeptide=Glyma.06g182600.2.p locus=Glyma.06g182600 ID=Glyma.06g182600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACTCAATCCCCTTCACCTCAGAACCTAGGTGGTGAAATTGAGCAAACAGAAAATGTAGATCAGCATAATAGGGGAGAAGAGCTTGGTAAACAGAGTTCAGACACATCGGTGTTTGTGAACTCAGAGCCATTGCGTGAGGAACAAATTCAGAATGCTGTGAAATTTCTGTCGCACCCGAAAGTTAGAGGTTCTCCTGTCATCCACAGACGATCGTTTCTGGAGAAGAAGGGCCTTACGAAGGAGGAGATTGATGAAGCCTTTCGGCGTGTGCCTGATTCACCTCCAAGTGTGCAGACAGCTGGCATAAATCAAGATGGACAATTGAAGCCATCATCAAACATTCAGCAGCAAGGCCAACCACAGGCTTTGCAGCTGACTGTACCAGCTTCTACTGGTGTTACTACTACGCTTGGAACCTTATCTCGCCGCAGTTTTCACTGGTCACATGCCCTTATTGCAGTTGGATTACTGGCTGCTTCAGGTGCTGGTACAGTTATAGTAATTAAGAATTCTATTCTCCCTCGGTTAAAATCCTGGATACGCAATGTTGTCCTAGAAGAGGATCATGACCAATCAAAGAGAACAGGCTCAAAACCAACATTGGCAGAAGAAGCTGCACAGGCTGCAAAAGCAGCTGCAGTTGCAGCTGCTGATATTGCAAAAGCAAGCCAAGAATTACTGAGTTCAAAAATTGAAGAGAAGAGATATTTTGTAGAAGTTGTGAACCTTTTGGATAAGCAAGTGCAGGAAATGAAGTTGATGACTAATGCAATAGGAAGATTGGAAGCTTCTGGTGGACTCTCTGTCTCAAAGCAAGAAGACCGCTTAGTCACTCAAACAGGTTCAAAGACACAGCAACTGATCGTGAATGGGAAGTCAGACTATGAGTCCCGATCAGTGAGATCTTCATCCCCTCCTGTATCTGTTGAACCATCTAGTGCTCCTCATCCTAAATCATATATGGAGATAATGGCCATGATCCAAAGAGGGGAGAAGCCTTCTAACATTAGGGTAAATCTTTTATGCCTTTCAATCTTGATAATTGTAGTTGCATGCCTAAATCATACATCTCATTTGTGTTCCATTGATATAAATTAA
Predicted protein sequences of Glyma.06g182600
>Glyma.06g182600.1.p sequence-type=predicted peptide transcript=Glyma.06g182600.1 locus=Glyma.06g182600 ID=Glyma.06g182600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATQSPSPQNLGGEIEQTENVDQHNRGEELGKQSSDTSVFVNSEPLREEQIQNAVKFLSHPKVRGSPVIHRRSFLEKKGLTKEEIDEAFRRVPDSPPSVQTAGINQDGQLKPSSNIQQQGQPQALQLTVPASTGVTTTLGTLSRRSFHWSHALIAVGLLAASGAGTVIVIKNSILPRLKSWIRNVVLEEDHDQSKRTGSKPTLAEEAAQAAKAAAVAAADIAKASQELLSSKIEEKRYFVEVVNLLDKQVQEMKLMTNAIGRLEASGGLSVSKQEDRLVTQTGSKTQQLIVNGKSDYESRSVRSSSPPVSVEPSSAPHPKSYMEIMAMIQRGEKPSNIREIDDSAPNPYQQPSNPRLAPRAKPWEVSQVQNTSTQVLPYQVNGKIQDNGDNTVPWWQTKNVRIKEIDNEIEYNGAPAASSPQPVQRAWVPPQPPPIAMPEAAEAIRRPKQGSPKGSDTG*

>Glyma.06g182600.2.p sequence-type=predicted peptide transcript=Glyma.06g182600.2 locus=Glyma.06g182600 ID=Glyma.06g182600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATQSPSPQNLGGEIEQTENVDQHNRGEELGKQSSDTSVFVNSEPLREEQIQNAVKFLSHPKVRGSPVIHRRSFLEKKGLTKEEIDEAFRRVPDSPPSVQTAGINQDGQLKPSSNIQQQGQPQALQLTVPASTGVTTTLGTLSRRSFHWSHALIAVGLLAASGAGTVIVIKNSILPRLKSWIRNVVLEEDHDQSKRTGSKPTLAEEAAQAAKAAAVAAADIAKASQELLSSKIEEKRYFVEVVNLLDKQVQEMKLMTNAIGRLEASGGLSVSKQEDRLVTQTGSKTQQLIVNGKSDYESRSVRSSSPPVSVEPSSAPHPKSYMEIMAMIQRGEKPSNIRVNLLCLSILIIVVACLNHTSHLCSIDIN*






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