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Report for Sequence Feature Glyma.06g173500

Feature Type:gene_model
Chromosome:Gm06
Start:14595971
stop:14646811
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g173500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36850.1AT glucan synthase-like 8 JGI N/AIEA
GO:0006075GO-bp (1->3)-beta-D-glucan biosynthetic process EnsemblGenomesN/AIEA
GO:0006075GO-bp (1->3)-beta-D-glucan biosynthetic process JGI N/AIEA
GO:0000148GO-cc 1,3-beta-D-glucan synthase complex EnsemblGenomesN/AIEA
GO:0000148GO-cc 1,3-beta-D-glucan synthase complex JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0003843GO-mf 1,3-beta-D-glucan synthase activity EnsemblGenomesN/AIEA
GO:0003843GO-mf 1,3-beta-D-glucan synthase activity JGI N/AIEA
KOG0916 KOG 1,3-beta-glucan synthase/callose synthase catalytic subunit JGI N/AIEA
PTHR12741Panther LYST-INTERACTING PROTEIN LIP5 (DOPAMINE RESPONSIVE PROTEIN DRG-1) JGI N/AIEA
PTHR12741:SF4Panther VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG JGI N/AIEA
PF02364PFAM 1,3-beta-glucan synthase component JGI N/AIEA
PWY-6773SoyCyc9 1,3-β-D-glucan biosynthesis Plant Metabolic Network ISS
GN7V-58344SoyCyc9-rxn 1,3-β-glucan synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.06g173500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g173500 not represented in the dataset
Glyma.06g173500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g173500
ParalogEvidenceComments
Glyma.04g192300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g173500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g18216 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g173500
>Glyma.06g173500.1 sequence-type=CDS polypeptide=Glyma.06g173500.1.p locus=Glyma.06g173500 ID=Glyma.06g173500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAATCCATTGTATCTTGGTTTCAAATAAAATAGATGAGAAAACAATCAATGAAGTGTTCTTGAAGGTGCTAGATAACTATATCAGGTGGTGCAGATACTTACGAATTCGTCTTGCATGGAATAGTTTAGAGGCAATTAACCGGGATAGGAAGCTTTTTTTGGTTTCTCTGTATTTTCTTATTTGGGGTGAAGCTGCAAATGTTCGTTTTCTTCCGGAGTGTATTTGCTATATATTCCACAATATGGCTAAAGAGTTGGATGCTATTTTGGATCATGGAGAAGCTGCACCTGCAGTCAGCTGCGTAACCGACGATGGTTCTGCAAAATTCCTTGAGAAAATAATTTATCCTATTTATCAAACGCTATTTGAAGAAGCTGATAGAAACAACAATGGGAAAGCTGCACACTCAGCATGGAGGAATTATGATGACTTCAATGAATACTTTTGGTCGCGTGCTTGTTTTGAATTAAACTGGCCAATGAGGCCAAATTCACCTTTCTTGCGGAAACCTAAAAGAACTAAAAGGACTGGTAAAAGCAGTTTTGTTGAGCATAGAACATTTCTTCACTTGTATAGAAGTTTCCATCGTCTTTGGATCTTCTTGGCATTAATGTTTCAGGCTTTGACAATCATTGCTTTCAATCATGGACACATCAACTTGAATACTTTCAAAACAATACTTAGCATTGGGCCGTCATTTGCAATCATGAATTTTGTCAAGAGTTTCTTAGATGTGTTGCTTACTTTTGGGGCTTACACCACTGCAAGGGGCATGGCTGTTTCAAGACTAGTTATAAAGTTTTTCTGGGGTGGCTTGACTTCCGTGTTTGTAACATATGTTTACCTGAAGGTTTTGCAGGAGAGAAATAGCAATAGCTCTGACAATTCATTCTATTTCCGGATATACCTTCTTGTGCTTGGTGTTTATGCTGCTATACGTCTATTCCTTGCACTGTTGCTCAAATTTCCAGCTTGTCATGCACTTTCGGAAATGTCTGATCAGTTTTTCTTTCAGTTTTTTAAGTGGATTTATCAAGAACGATACTATGTTGGACGTGGTCTTTATGAGAGGATGAGTGATTACTGCAGGTATGTGGCCTTTTGGTTGGTGGTACTTGCCGTCAAATTTACTTTTGCTTACTTTCTCCAGATTAAACCTCTTGTCGAACCTACCAATATCATTGTTCATCTTCCATCTTTGCCTTACTCATGGCATGATTTGATATCAAGGAATAATTACAATGCCTTTACTATTCTTAGCTTGTGGGCTCCTGTTGTGGCTATTTATCTCATGGATATTCTCATTTTTTACACTATCATGTCAGCAATTGTTGGTGGTGTGAGTGGTGCGCGTGCTCGGCTAGGCGAGATTCGTTCAATTGAAATGGTGCATAGACGTTTTGAAAGTTTCCCAGGGGCATTTGTAAAAAATTTGGTCTCTCCACAAATAAAAAGGATTCCCTTGAGCGGACAATCAACCCAGGATTCTCAAGATATGAACAAAGCATATGCTGCCATGTTTGCTCCATTTTGGAATGAGATAATTAAAAGCCTGCGTGAGGAAGATTTTATTAGCAATAGGGAAATGGACTTGCTCTCAATTCCTAGTAATGCAGGAAGTCTGAGATTAGTTCAATGGCCTTTATTTCTTCTAAGCAGTAAGATCCTGTTGGCGATTGATTTGGCTTTGGACTGCAAAGATACTCAGACTGATCTGTGGAACAGGATATGTAGGGATGAGTATATGGCCTATGCAGTTAAGGAATGCTATTACAGTGTTGAAAAAATATTATATTCATTAGTTGACAACGAAGGAAGACTTTGGGTGGAGAGAATTTTTCGTGAGATCAATAACAGTATTATAGAGGGTTCGCTTGTTATAACCTTGTCTCTTAAGAAGCTTCCAGTTGTTTTATCAAGACTTACGGCATTGACCGGACTCCTGATTCGAAATGATCCTGAACTTGCTAAAGGTGCTGCAAAAGCTGTACATGACCTGTATGAAGTTGTTACTCATGAACTGGTATCTTCAGATTTAAGGGAGAATCTTGATACATGGAACCTTTTAGCTAGAGCTAGGGATGAGGGACGTCTTTTTTCTAGGATAGTATGGCCTAATGATCCTGAGATTAAAGAGCTTGTAAAGAGGTTGCATCTTCTTCTTACTGTAAAGGACTCTGCTGCTAATGTTCCAAAAAATCTTGAAGCCAGAAGAAGATTAGAGTTTTTCTCAAATTCATTATTTATGGACATGCCTTCAGCAAAGCCTGTTAGTGAAATGTTGCCATTCAGTGTTTTCACTCCATACTATAGTGAAACTGTGCTTTATAGTACTTCCGAATTGCAAAAAGAGAACGAAGATGGCATATCTATTCTTTTCTATCTTCAAAAGATATTTCCAGATGAATGGGAAAACTTTCTTGAAAGAATTGGTCGAGGAGCATCCACTGGGGACGCAGAACTTCAAGAAAATTCCAGTGACTCTTTGGAACTTCGTTTTTGGGCTTCTTATCGAGGGCAGACTCTGGCGAGGACAGTGCGTGGTATGATGTACTATAGGAGGGCTTTAATGCTGCAGAGCTTTCTGGAGAGCAGATCACTTGGAGTGGACAATTATTCTCAAAACAACTTCATTACAACTCAAGATTTTGAATCATCTCGCGAATCACGGGCACAGGCAGATTTGAAGTTTACTTATGTTGTATCATGCCAAATTTATGGTCAACAAAAGCAGCGAAAGGCACCAGAAGCTGCTGATATTGCTTTATTGTTACAGAGGAATGAGGCACTCCGAGTTGCTTTCATTCATGTTGATGAAAGTACAACTGATGGAAATACTTCAAAAGTGTTTTATTCAAAGCTTGTCAAAGCCGATATAAATGGAAAAGATCAGGAAATATATTCTATAAAACTTCCTGGAGATCCTAAGCTTGGGGAAGGAAAGCCTGAAAACCAAAACCATGCAATAGTTTTCACTCGTGGTGAAGCTGTTCAAACTATTGACATGAATCAGGACAATTATCTTGAAGAAGCAATGAAAATGAGGAATCTTCTGGAGGAGTTCCATGCGAATCATGGCCTTCGCCCTCCAAGCATTCTTGGAGTGAGGGAGCATGTTTTTACAGGAAGTGTCTCTTCCTTGGCTTGGTTCATGTCAAATCAAGAAACTAGCTTTGTAACCTTGGCCCAACGAGTTTTAGCAAATCCTCTCAAAGTTCGCATGCACTATGGACACCCAGATGTATTTGACCGAATATTTCACATAACTCGAGGAGGCATTAGTAAGGCATCACGTGTTATTAATATTAGTGAGGATATATACGCTGGTTTCAACTCCACATTGCGGCTGGGAAATGTCACACACCATGAATACATTCAGGTTGGAAAAGGAAGGGATGTTGGGTTAAACCAGATTGCCCTCTTTGAGGGGAAAGTGGCAGGTGGTAATGGAGAGCAAGTGCTTAGCAGGGACATTTACAGGCTTGGACAACTTTTTGATTTCTTCAGAATGCTTTCTTTCTTCTTCACAACTGTTGGTTATTATGTCTGCACCATGATGACAGTCCTTACAGTTTATATATTCTTATATGGAAGAGCATACCTGGCGTTTTCTGGTCTTGATGAAGCTGTCTCAGAGAAGGCAAAATTGCAGGGTAACACAGCACTTGATGCAGCTTTAAATGCTCAATTTTTGGTCCAGATTGGCGTTTTCACTGCAGTTCCAATGATAATGGGTTTTATACTTGAATTAGGATTGCTGAAGGCTGTTTTCAGTTTCATCACAATGCAACTACAATTGTGTTCTGTCTTCTTCACTTTCTCATTGGGAACTAGAACTCATTATTTTGGGCGTACCATTCTCCATGGGGGTGCAAAATATCGTGCTACTGGTAGAGGCTTTGTTGTCCGTCACATAAAGTTTGCTGAAAATTACAGACTATATTCTAGGAGCCACTTTGTCAAAGCGCTTGAGGTGGCATTGCTTCTTATAGTTTATATCGCATATGGGTATGCAGAGGGAGGTGCTGTTACGTATGTTTTGCTAACTCTAAGTAGTTGGTTCCTTGTCATTTCTTGGCTTTTCGCTCCTTACCTTTTCAACCCCTCTGGTTTCGAGTGGCAGAAGACTGTGGAAGATTTTGATGATTGGACAAGTTGGCTTCTTTACAAAGGAGGAGTAGGAGTAAAAGGAGAAAATAGTTGGGAGTCTTGGTGGGACGAAGAACAGATGCATATCCAAACTTGGAGGGGTCGTATTTTGGAGACAATTTTGAGTGCAAGGTTCTTCTTGTTTCAATATGGTGTTGTGTATAAGCTGCATCTTACTGGAAATGATACATCACTTGCGATCTATGGATTCTCATGGGCTGTCTTGGTTGGAATTGTCTTGATATTTAAGATCTTTGCCTACAGCCCAAAAAAGGCTGCTAATTTCCAGGTAGTGTTGCGATTTGCACAAGGGGTTGCATCTATAGGCCTTGTTGCAGCTGTGTGTCTTGTTGTTGCCTTTACTCAACTGTCGATAGCTGACCTTTTTGCAAGCATCCTTGCATTTATCCCTACTGGATGGGGAATATTATCTTTGGCAATTGCATGGAAGAAGATAGTTTGGAGTCTCGGCATGTGGGATTCTGTCCGTGAGTTTGCTAGAATGTATGACGCTGGAATGGGTATGATCATTTTTGCACCAATAGCATTTTTATCGTGGTTTCCATTCATTTCAACTTTCCAATCTCGCCTTCTCTTCAATCAAGCCTTCAGCCGTGGTCTTGAAATTTCTATCATCCTTGCTGGAAACAAAGCTAACGTTGAGACTTAG
Predicted protein sequences of Glyma.06g173500
>Glyma.06g173500.1.p sequence-type=predicted peptide transcript=Glyma.06g173500.1 locus=Glyma.06g173500 ID=Glyma.06g173500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKIHCILVSNKIDEKTINEVFLKVLDNYIRWCRYLRIRLAWNSLEAINRDRKLFLVSLYFLIWGEAANVRFLPECICYIFHNMAKELDAILDHGEAAPAVSCVTDDGSAKFLEKIIYPIYQTLFEEADRNNNGKAAHSAWRNYDDFNEYFWSRACFELNWPMRPNSPFLRKPKRTKRTGKSSFVEHRTFLHLYRSFHRLWIFLALMFQALTIIAFNHGHINLNTFKTILSIGPSFAIMNFVKSFLDVLLTFGAYTTARGMAVSRLVIKFFWGGLTSVFVTYVYLKVLQERNSNSSDNSFYFRIYLLVLGVYAAIRLFLALLLKFPACHALSEMSDQFFFQFFKWIYQERYYVGRGLYERMSDYCRYVAFWLVVLAVKFTFAYFLQIKPLVEPTNIIVHLPSLPYSWHDLISRNNYNAFTILSLWAPVVAIYLMDILIFYTIMSAIVGGVSGARARLGEIRSIEMVHRRFESFPGAFVKNLVSPQIKRIPLSGQSTQDSQDMNKAYAAMFAPFWNEIIKSLREEDFISNREMDLLSIPSNAGSLRLVQWPLFLLSSKILLAIDLALDCKDTQTDLWNRICRDEYMAYAVKECYYSVEKILYSLVDNEGRLWVERIFREINNSIIEGSLVITLSLKKLPVVLSRLTALTGLLIRNDPELAKGAAKAVHDLYEVVTHELVSSDLRENLDTWNLLARARDEGRLFSRIVWPNDPEIKELVKRLHLLLTVKDSAANVPKNLEARRRLEFFSNSLFMDMPSAKPVSEMLPFSVFTPYYSETVLYSTSELQKENEDGISILFYLQKIFPDEWENFLERIGRGASTGDAELQENSSDSLELRFWASYRGQTLARTVRGMMYYRRALMLQSFLESRSLGVDNYSQNNFITTQDFESSRESRAQADLKFTYVVSCQIYGQQKQRKAPEAADIALLLQRNEALRVAFIHVDESTTDGNTSKVFYSKLVKADINGKDQEIYSIKLPGDPKLGEGKPENQNHAIVFTRGEAVQTIDMNQDNYLEEAMKMRNLLEEFHANHGLRPPSILGVREHVFTGSVSSLAWFMSNQETSFVTLAQRVLANPLKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIYAGFNSTLRLGNVTHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDFFRMLSFFFTTVGYYVCTMMTVLTVYIFLYGRAYLAFSGLDEAVSEKAKLQGNTALDAALNAQFLVQIGVFTAVPMIMGFILELGLLKAVFSFITMQLQLCSVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAYGYAEGGAVTYVLLTLSSWFLVISWLFAPYLFNPSGFEWQKTVEDFDDWTSWLLYKGGVGVKGENSWESWWDEEQMHIQTWRGRILETILSARFFLFQYGVVYKLHLTGNDTSLAIYGFSWAVLVGIVLIFKIFAYSPKKAANFQVVLRFAQGVASIGLVAAVCLVVAFTQLSIADLFASILAFIPTGWGILSLAIAWKKIVWSLGMWDSVREFARMYDAGMGMIIFAPIAFLSWFPFISTFQSRLLFNQAFSRGLEISIILAGNKANVET*






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