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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G50320.1 | AT | radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein | JGI | N/A | IEA |
| GO:0006351 | GO-bp | transcription, DNA-templated | EnsemblGenomes | N/A | IEA |
| GO:0006355 | GO-bp | regulation of transcription, DNA-templated | EnsemblGenomes | N/A | IEA |
| GO:0006357 | GO-bp | regulation of transcription by RNA polymerase II | EnsemblGenomes | N/A | IEA |
| GO:0016573 | GO-bp | histone acetylation | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0033588 | GO-cc | Elongator holoenzyme complex | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0004402 | GO-mf | histone acetyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0008080 | GO-mf | N-acetyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0008080 | GO-mf | N-acetyltransferase activity | JGI | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016746 | GO-mf | transferase activity, transferring acyl groups | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | JGI | N/A | IEA |
| KOG2535 | KOG | RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase | JGI | N/A | IEA |
| PTHR11135 | Panther | HISTONE ACETYLTRANSFERASE-RELATED | JGI | N/A | IEA |
| PF00583 | PFAM | Acetyltransferase (GNAT) family | JGI | N/A | IEA |
| PF04055 | PFAM | Radical SAM superfamily | JGI | N/A | IEA |
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Glyma.06g173000 not represented in the dataset |
Glyma.06g173000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.04g192900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma06g18150 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g173000.1 sequence-type=CDS polypeptide=Glyma.06g173000.1.p locus=Glyma.06g173000 ID=Glyma.06g173000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGCGGTAGCGGTGGCAGAGGTTGGGAAGGCCCCACGGCCGGGCCAGGGCGGTTACGAAGCGCACGGCCTGAGCGAGGAGGAGGCTCGTGTACGCGCCATCGCGGAGATCGTGAGTTCCATGGTGGACCTCTCCCACAAAGGCCAGAACGTGGACCTGAACGCGCTCAAGTCCGCGGCGTGCCGCAAGTACCGGCTCTCACGCGCGCCGAAGCTCGTGGAGATGATCGCGGCGCTCCCCGACGCCGAGCGCGAGACGCTCCTCCCCAAGCTCCGCGCCAAGCCCGTCCGCACCGCCTCCGGAATCGCCGTCGTCGCCGTCATGTCGAAGCCGCACCGGTGCCCACACATCGCCACCACCGGGAACATCTGCGTCTACTGCCCCGGGGGACCTGACTCCGACTTCGAGTACAGTACCCAGTCTTACACCGGTTATGAACCAACCAGCATGCGTGCAGTTCGTGCGAGGTATAATCCATATGTCCAAGCGAGGTGCAGGATAGATCAGCTTAAGCGTTTGGGTCATAGTGTAGACAAGGTTGAATTTATCTTAATGGGCGGTACCTTCATGTCACTTCCGGCTGATTACCGTGATTACTTTATAAGAAATCTTCATGATGCTTTGTCTGGACACACATCTGCCAATGTGGAAGAGGCAGTGGCTTACTCTGAGCATGGGGCAACCAAGTGTATTGGCATGACAATTGAAACGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGCCAAATGCTTTCTTATGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACCTATGAAGATGTTGCTCGAGACACAAATAGAGGACACACTGTTGCTGCTGTAGCTGATTGTTTTTGCCTGGCTAAAGATGCTGGTTTCAAGGTTGTTGCTCATATGATGCCTGATCTTCCAAATGTTGGTGTTGAAAGGGACATGGAAAGTTTCCGGGAGTTTTTTGAGAGTCCCTTGTTTAGAGCAGATGGGCTTAAAATATATCCTACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTCTGGAAAACTGGCAGGTATAGAAACTATCCACCAGAGCAACTTGTGGACATTATAGCAAGGATCCTTGCAATGGTACCCCCATGGACACGTGTTTATAGAGTTCAGCGGGATATTCCCATGCCTCTGGTTACCTCTGGGGTTGAGAAAGGAAATCTGCGGGAGCTGGCATTAGCTCGAATGGAAGACCTGGGATTGAAATGTCGTGATGTTCGGACCAGAGAAGCTGGAATCCAGGATATTCACCACCAAATTAAGCCAGAAGAGGTGGAGCTTGTTCGGCGTGATTATATGGCAAATCAGGGTTGGGAAACATTTCTATCATATGAAGATACACGGCAGGATATCCTTGTTGGTTTGTTGCGGCTGCGAAAATGTGGCCGCAACACAACTTGTCCAGAGCTTATGGGGAAGTGTTCTATTGTTCGTGAACTCCATGTTTATGGAACTGCTGTACCAGTTCATGGACGGGATGCTGACAAGCTACAACACCAGGGTTATGGCACACTTTTAATGGAGGAGGCAGAGCGCATTGCTTGCAGAGAACACAGATCAACAAAAATAGCTGTAATTTCAGGGGTTGGCACACGCCATTATTACAGGAAACTGGGATATGAGCTTGAAGGACCTTACATGGTGAAATATCTAGTGAAATAA
>Glyma.06g173000.1.p sequence-type=predicted peptide transcript=Glyma.06g173000.1 locus=Glyma.06g173000 ID=Glyma.06g173000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAAVAVAEVGKAPRPGQGGYEAHGLSEEEARVRAIAEIVSSMVDLSHKGQNVDLNALKSAACRKYRLSRAPKLVEMIAALPDAERETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAVRARYNPYVQARCRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYMANQGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIACREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLVK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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