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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G48560.1 | AT | chlorsulfuron/imidazolinone resistant 1 | JGI | N/A | IEA |
| GO:0008652 | GO-bp | cellular amino acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009082 | GO-bp | branched-chain amino acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009097 | GO-bp | isoleucine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009099 | GO-bp | valine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | EnsemblGenomes | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0003984 | GO-mf | acetolactate synthase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0030976 | GO-mf | thiamine pyrophosphate binding | EnsemblGenomes | N/A | IEA |
| GO:0030976 | GO-mf | thiamine pyrophosphate binding | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0050660 | GO-mf | flavin adenine dinucleotide binding | EnsemblGenomes | N/A | IEA |
| KOG4166 | KOG | Thiamine pyrophosphate-requiring enzyme | JGI | N/A | IEA |
| PTHR18968 | Panther | THIAMINE PYROPHOSPHATE ENZYMES | JGI | N/A | IEA |
| PTHR18968:SF13 | Panther | ACETOLACTATE SYNTHASE CATALYTIC SUBUNIT, MITOCHONDRIAL | JGI | N/A | IEA |
| PF00205 | PFAM | Thiamine pyrophosphate enzyme, central domain | JGI | N/A | IEA |
| PF02775 | PFAM | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | JGI | N/A | IEA |
| PF02776 | PFAM | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | JGI | N/A | IEA |
| BRANCHED-CHAIN-AA-SYN-PWY | SoyCyc9 | superpathway of branched chain amino acid biosynthesis | Plant Metabolic Network | ISS | |
| VALSYN-PWY | SoyCyc9 | L-valine biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-42859 | SoyCyc9-rxn | acetolactate synthase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| AHAS2 | acetohydroxyacid synthase 2 gene | |
| ALS2 | ALS-2 | Acetolactate synthase gene 2 |
| ALS2 | ALS2 | Acetolactate synthase gene 2 |
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Glyma.06g169700 not represented in the dataset |
Glyma.06g169700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.04g196100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma06g17790 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g169700.1 sequence-type=CDS polypeptide=Glyma.06g169700.1.p locus=Glyma.06g169700 ID=Glyma.06g169700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGCCACAGCTTCCAGAACCACCCCATTCTCTTCTCCCTCTTCCTCTTCACACCCCACCTTCCCCAAACGCATTGCTAGATCCACCCTCCCTCTCTCTCATCAAACCTTCATTAAACCCAACCACGCGCTCAAAATCAAATGTTCCATCTCCAAACCCCCCTCGCCGCCGGCCACCACCACCACTGCAGCGCCGGCAACATCAGAGCCCTTCGTGTCGCGGTTCGCCTCCGCTGAACCGCGCAAGGGCTCGGACATCCTTGTGGAGGCCCTTGAGCGGCTGGGCGTGACTAATGTCTTCGCCTACCCCGGCGGCGCGTCGATGGAGATCCACCAGGCTCTCACGCGCTCCTCCACCATCCGCAACGTCCTCCCTCGCCACGAGCAGGGCGGCATCTTCGCCGCCGAGGGCTACGCGCGCTCCTCTGGCCTCCCCGGCGTCTGCATCGCCACCTCCGGCCCCGGCGCCACCAACCTCGTCAGCGGCCTCGCCGACGCCTTAATGGACAGCGTCCCCGTCGTCGCCATCACCGGCCAGGTCCCCCGGCGCATGATTGGCACCGACGCCTTCCAAGAAACCCCCATCGTCGAAGTCACCAGATCCATCACCAAGCACAACTACCTCATCCTCGACGTCGACGACATTCCCCGCATCGTCGCCGAAGCCTTCTTCGTCGCCACCTCCGGCCGCCCCGGCCCGGTCCTCATCGACATCCCCAAAGACGTCCAACAGCAACTCGCCGTGCCTAATTGGGACGAGCCCATCAACCTCCCCGGGTACCTCGCCAGGCTTCCCAGGCCCCCCACCGAGGCCCAATTAGAGCACATTGTCAGACTCATAACCGAGGCCCAAAAGCCCGTCCTCTACGTCGGAGGTGGCAGTTTGAATTCCAGTGATGAATTGAGACGCTTTGTGGAACTGACTGGTATTCCCGTTGCTAGCACTTTAATGGGCCTTGGAACTTATCCTATTGGGGATGAATATTCCCTTCAAATGTTGGGTATGCATGGTACTGTTTATGCTAACTATGCTGTTGACAATAGTGATTTGTTGCTTGCCTTTGGGGTAAGGTTTGATGACCGTGTTACTGGGAAGCTTGAGGCTTTTGCTAGTAGGGCTAAGATTGTTCACATTGATATTGATTCTGCTGAGATTGGAAAGAATAAGCAGGCGCATGTGTCGGTTTGCGCGGATTTGAAGCTGGCCTTGCAGGGGATTAATATGATTTTGGAGAAAAAAAGAGTGGGGGGTGGTAAGCTTGATCTTGGAGGCTGGAGGGAAGAGATTAATGTGCAGAAACACAAGTTTCCATTGGGTTACAAAACATTCCAGGACGCCATTTCCCCGCAGCATGCTATTGAGGTTCTTGATGAGTTGACAAATGGGGATGCTATTGTTAGTACTGGGGTTGGGCAGCATCAAATGTGGGCTGCACAGTTTTACAAGTACAAGAGACCGAGGCAGTGGTTGACCTCGGGGGGTCTTGGAGCCATGGGTTTTGGATTGCCTGCGGCTATTGGCGCTGCTGTTGCTAACCCCGGCGCTGTTGTGGTTGACATTGATGGAGATGGTAGTTTCATCATGAATGTTCAAGAATTGGCAACTATAAGAGTGGAGAATCTTCCTGTTAAGATATTGTTGTTGAATAATCAGCATTTGGGCATGGTGGTTCAGTGGGAGGATCGGTTCTACAAGTCCAATAGAGCTCACACCTATCTTGGAGACCCGTCTAGCGAGAATGAGATATTCCCAAACATGCTCAAGTTTGCTGACGCTTGTGGGATACCGGCAGCGCGTGTGACGAAGAAGGAAGAGCTTAGAGCAGAAATTCAGAAAATGTTGGACACCCCTGGCCCCTACCTTCTTGATGTCATTGTGCCACATCAGGAGCATGTGTTGCCGATGATTCCCAGTAATGGATCCTTCAAGGATGTGATAACGGAGGGAGACGGTAGAACGAGGTACTGA
>Glyma.06g169700.1.p sequence-type=predicted peptide transcript=Glyma.06g169700.1 locus=Glyma.06g169700 ID=Glyma.06g169700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAATASRTTPFSSPSSSSHPTFPKRIARSTLPLSHQTFIKPNHALKIKCSISKPPSPPATTTTAAPATSEPFVSRFASAEPRKGSDILVEALERLGVTNVFAYPGGASMEIHQALTRSSTIRNVLPRHEQGGIFAAEGYARSSGLPGVCIATSGPGATNLVSGLADALMDSVPVVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLILDVDDIPRIVAEAFFVATSGRPGPVLIDIPKDVQQQLAVPNWDEPINLPGYLARLPRPPTEAQLEHIVRLITEAQKPVLYVGGGSLNSSDELRRFVELTGIPVASTLMGLGTYPIGDEYSLQMLGMHGTVYANYAVDNSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQAHVSVCADLKLALQGINMILEKKRVGGGKLDLGGWREEINVQKHKFPLGYKTFQDAISPQHAIEVLDELTNGDAIVSTGVGQHQMWAAQFYKYKRPRQWLTSGGLGAMGFGLPAAIGAAVANPGAVVVDIDGDGSFIMNVQELATIRVENLPVKILLLNNQHLGMVVQWEDRFYKSNRAHTYLGDPSSENEIFPNMLKFADACGIPAARVTKKEELRAEIQKMLDTPGPYLLDVIVPHQEHVLPMIPSNGSFKDVITEGDGRTRY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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