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Report for Sequence Feature Glyma.06g165300

Feature Type:gene_model
Chromosome:Gm06
Start:13703439
stop:13712630
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g165300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23720.3AT dual specificity protein phosphatase family protein JGI N/AIEA
GO:0006470GO-bp protein dephosphorylation EnsemblGenomesN/AIEA
GO:0006470GO-bp protein dephosphorylation JGI N/AIEA
GO:0009737GO-bp response to abscisic acid EnsemblGenomesN/AIEA
GO:0015074GO-bp DNA integration EnsemblGenomesN/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0016311GO-bp dephosphorylation EnsemblGenomesN/AIEA
GO:0035335GO-bp peptidyl-tyrosine dephosphorylation EnsemblGenomesN/AIEA
GO:0043622GO-bp cortical microtubule organization EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0004721GO-mf phosphoprotein phosphatase activity EnsemblGenomesN/AIEA
GO:0004725GO-mf protein tyrosine phosphatase activity EnsemblGenomesN/AIEA
GO:0008138GO-mf protein tyrosine/serine/threonine phosphatase activity EnsemblGenomesN/AIEA
GO:0008138GO-mf protein tyrosine/serine/threonine phosphatase activity JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
GO:0016791GO-mf phosphatase activity EnsemblGenomesN/AIEA
KOG1718 KOG Dual specificity phosphatase JGI N/AIEA
PTHR10159Panther DUAL SPECIFICITY PROTEIN PHOSPHATASE JGI N/AIEA
PTHR10159:SF129Panther JGI N/AIEA
PF00782PFAM Dual specificity phosphatase, catalytic domain JGI N/AIEA
PF07727PFAM Reverse transcriptase (RNA-dependent DNA polymerase) JGI N/AIEA
PF09192PFAM Actin-fragmin kinase, catalytic JGI N/AIEA

Expression Patterns of Glyma.06g165300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g165300 not represented in the dataset
Glyma.06g165300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g165300
ParalogEvidenceComments
Glyma.04g200300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g165300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g17371 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g165300
>Glyma.06g165300.1 sequence-type=CDS polypeptide=Glyma.06g165300.1.p locus=Glyma.06g165300 ID=Glyma.06g165300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCAAAGACAAAGAGCAGCTAAAGCAGGATCCCACGGCAATCACCACTTCCTCACAAAACCAAAACCAAGCCCAGGAATTTCAGGGTAAAGGTGAAGTGGAAAAGGAGGAAGAGGCTGAGGCCCCTTTGACTCTAAGCGTTACTTCCAAGGTTTTGAACATGTTGGGAGACATCACAGCAGGGCCTGCATCTATGTTCGCGCAATGGCTCCAATTAGTTCGTAAACGCACTTCTAACAGTCGCACTTCTGGCTTCCCTCACCGTTCTTCCAGCATGCCTTCTAGCCCGGGAGAATCTATTGAGGACGCAAAGAATGATCAGCAAACAGAGTTTAGTTTGTGGGAGAGGCTTGGTAAAGCTGAAATGTTGGACATTGAGTCAAGCTCATTTTCTTGGGACAGACTCTCTTCACTTCACCACACCGAACATACTAGCAGCAATGAACATTCTGAGGATGAAATAAACCGCGCTCTTGAGGTAACAGTAAATTCTGGAGGGGTGGTCTTCTTTGCCTTTTTCAATGGTTTTGGGAACGACGATGCCTCTCCAAAAGAAGCAGCCGCTGTTATAAAGATATCATCTTCAAGAATGGCAACGCAATCCGAACGTCTTGGTTACGAATTTGCCAAACAGTTGGGAGTCCAAACTCCGCAGGCTAGAGTCATCCACAATACAAGTTTAGAGTGGACCCAAATAAAGGAAGCTACAGAAAAAGCAAGGGATGTTGCAAGTTCTGCAGGCGATGAAGTTGATGAAATGACATGCACAGTATTCGTGAAAGAGTTAGGCCATCTCACTTATTTCTTGGGTTTAGAGGTGCATTATCATCACCAAGGCATTTCTCTATGTCAACACAAGTATATTCAAGACTTGGTCCAGCTAGCTGGACTCCCAAATGCCACCCCTGTTGACACTCCCATGGAAGTTAATGTTAAATATCGGAGAGATGAAGGTGAACTTCTTGATGATCCCACTCACTATCGCAAGCTCGTGGGAAGTCTCATCTATCTAACTATCACTCGCCTAGATATTTCTTTTGTTGTCCACACCGTGAGTAAGTTCATGCAATCTCCGAGGCATTTGCATCTTTTAGCAGTAAAACAGATCATTAGATACCTCCTTGGCACCCCAAAGCATGGTCTGTTTTTTCCTGCTGATTCCTCCGTACAACTCCAAGCATACAGTGATGCTGATTGGGCTGAACTTTTGGAAGCACTTGAACTTAGCCGATGTCTCATGTTTATGAGTTATGTGCACAGTTCACCCTTGCTTGAAAGCACTACAGCATTTGAATCACAGGAACTTGCAGAACGAACATCAGCTGCCCTTGACAGGATAATGTTGTTGGACCTTGTCATCAGAAATGAAGATAGGCTCCCTTGCCGGCAGCTTAGATGGCGTGGGAACTCCGCAAATTTGTTATTGGCTGAAAAGATAATCTCAAGTACAGATACAGCAGGAGAAACTCCTGATTCTGCAATGAACTCATATGGACAGAGAGCAAACAGGGCACTTCAAAAAGAAAAAAGTTTTAAAAGTCAAACGTCATTAGAATCAATGCTTACCAACTTTATTGTGGCCATTGATTCTGGCGTTCCTCGTCGACCCCCTGTTGGAAAACGAACAGATGATCAGGTTAGTTATCCTAAGTTGGTCGAGTTACTACTCAATAGCTCAGAGTTTTCCTCTAACCTGTTACATGATATAACTGGAGGGAGACTAGGATTTCCTCATGAAGACACAAATACAATCACTGATGTCCATCATACTACTGATGTAACATCAGTCGTTCATGTGTTCCGTAGTGGTTTTCGTGCTGCTCTCAGGGATCTGCAGGGATTCCATATATTCCTACTCACACTGCATCAAAAACTAGATAATTTGTTAAGATCATTTATGAATGCTATAGGCAAAATATCATCAGGGGAGTCTGAAAAAGAGGATGCAGTGGTTCCTGGCTCAGCTTCACCCACTGTTTTTGGTAGTTGTCCCTCTCCATCTAGTAAAGAAAGGCTTTCTAATGATATCCATCAAGATTGTAGTGATTCAGAATCTCAGAGAACTGCTCCAAGGGCATCATCATCTTCAGGCAAAAGAGATTGTTGTGACTCTGCTTCTTCCGTGTCAAGAGAAGGTTGGCATGGAAAACACTCTAAAGGAAGTGCGGATTCACTTCGTGCTCTCCGCTTGACAACCAAGCTCCGTGACTTACATAAACTTGCCAAGGTTGATTCAGAATCCCATAAAGAATTTGAACACTGGAATGAAATGCTTAAAAATGATGCGGTCAAGTTATGTTTGGAGCATAATTTTAACACAGGATTTTTTGAGGGTTGTGAGAACAACACTGTTGTTGATGCATATGAACTGAAGGTCAGACTTGAGCATATCCTTGAGAGGATTGCCTGCATATCTGAGGCTGCGAATACAGAGAAACCATCTGCGGTTACAAATAGTCTGTTCATTGGTGGAGCACTGGCTGCAAGATCTACATACACACTGCAACGCTTGGGAATCACGCATATTTTATGTTTGTGTACAAATGAAATTGGCCAATCAGATTCTCAATTTCCTGATCTATTCATGTACACAAATTTCTCTGTGTGTGACACTGAAGATTCTAACATCAGCAGCATATTTGAAGAGGCCTGTGATTTTATAGACTATGTTGAACAAGCTGGTCGGAGTATTTTAGTCCATTGCTTCGAGGGGAAAAGCCGAAGTGCCACTTTAGTCCTTGCTTACCTAATGCTTAGAAAGAAATTCACTTTGTTAGAAGCATGGAGTGCTCTAAAACGAGTTCATCGCCGATCTCAGCCCAACGATGGTTTTGCAAAGATCTTACTTGAGCTGGACCTGAAACTGCATGGGAAGGTTTCAATGGAGTGGCAGCAACGGAAACCAATGATGAAAGTTTGCCCCATCTGTGGCAAGAATGCTGGACTAAGCAGTAGCTCTCTTAAACTCCATCTTCAGAAATCACACAAAAGGCTGTCATCAGGAAGCGTAGATAGTGCCATGACAATGGAGATTCAGAAGGCATTAACAACTTTGAAGATTAGCCGTGGTGGGAGTGTCAGTCCCAAACCAAGGAAGTCTCATTCAACGATAGAAGCATAG
Predicted protein sequences of Glyma.06g165300
>Glyma.06g165300.1.p sequence-type=predicted peptide transcript=Glyma.06g165300.1 locus=Glyma.06g165300 ID=Glyma.06g165300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKDKEQLKQDPTAITTSSQNQNQAQEFQGKGEVEKEEEAEAPLTLSVTSKVLNMLGDITAGPASMFAQWLQLVRKRTSNSRTSGFPHRSSSMPSSPGESIEDAKNDQQTEFSLWERLGKAEMLDIESSSFSWDRLSSLHHTEHTSSNEHSEDEINRALEVTVNSGGVVFFAFFNGFGNDDASPKEAAAVIKISSSRMATQSERLGYEFAKQLGVQTPQARVIHNTSLEWTQIKEATEKARDVASSAGDEVDEMTCTVFVKELGHLTYFLGLEVHYHHQGISLCQHKYIQDLVQLAGLPNATPVDTPMEVNVKYRRDEGELLDDPTHYRKLVGSLIYLTITRLDISFVVHTVSKFMQSPRHLHLLAVKQIIRYLLGTPKHGLFFPADSSVQLQAYSDADWAELLEALELSRCLMFMSYVHSSPLLESTTAFESQELAERTSAALDRIMLLDLVIRNEDRLPCRQLRWRGNSANLLLAEKIISSTDTAGETPDSAMNSYGQRANRALQKEKSFKSQTSLESMLTNFIVAIDSGVPRRPPVGKRTDDQVSYPKLVELLLNSSEFSSNLLHDITGGRLGFPHEDTNTITDVHHTTDVTSVVHVFRSGFRAALRDLQGFHIFLLTLHQKLDNLLRSFMNAIGKISSGESEKEDAVVPGSASPTVFGSCPSPSSKERLSNDIHQDCSDSESQRTAPRASSSSGKRDCCDSASSVSREGWHGKHSKGSADSLRALRLTTKLRDLHKLAKVDSESHKEFEHWNEMLKNDAVKLCLEHNFNTGFFEGCENNTVVDAYELKVRLEHILERIACISEAANTEKPSAVTNSLFIGGALAARSTYTLQRLGITHILCLCTNEIGQSDSQFPDLFMYTNFSVCDTEDSNISSIFEEACDFIDYVEQAGRSILVHCFEGKSRSATLVLAYLMLRKKFTLLEAWSALKRVHRRSQPNDGFAKILLELDLKLHGKVSMEWQQRKPMMKVCPICGKNAGLSSSSLKLHLQKSHKRLSSGSVDSAMTMEIQKALTTLKISRGGSVSPKPRKSHSTIEA*






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