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Report for Sequence Feature Glyma.06g164800

Feature Type:gene_model
Chromosome:Gm06
Start:13640925
stop:13644165
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g164800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G25630.1AT fibrillarin 2 JGI N/AIEA
GO:0000494GO-bp box C/D snoRNA 3'-end processing EnsemblGenomesN/AIEA
GO:0006364GO-bp rRNA processing EnsemblGenomesN/AIEA
GO:0006364GO-bp rRNA processing JGI N/AIEA
GO:0008033GO-bp tRNA processing EnsemblGenomesN/AIEA
GO:0008033GO-bp tRNA processing JGI N/AIEA
GO:0030488GO-bp tRNA methylation JGI N/AIEA
GO:0031167GO-bp rRNA methylation EnsemblGenomesN/AIEA
GO:1990258GO-bp histone glutamine methylation EnsemblGenomesN/AIEA
GO:0015030GO-cc Cajal body EnsemblGenomesN/AIEA
GO:0031428GO-cc box C/D snoRNP complex EnsemblGenomesN/AIEA
GO:0031515GO-cc tRNA (m1A) methyltransferase complex JGI N/AIEA
GO:0032040GO-cc small-subunit processome EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity JGI N/AIEA
GO:0008649GO-mf rRNA methyltransferase activity EnsemblGenomesN/AIEA
GO:0016429GO-mf tRNA (adenine-N1-)-methyltransferase activity JGI N/AIEA
GO:1990259GO-mf histone-glutamine methyltransferase activity EnsemblGenomesN/AIEA
KOG1596 KOG Fibrillarin and related nucleolar RNA-binding proteins JGI N/AIEA
PTHR10335Panther RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN JGI N/AIEA
PF01269PFAM Fibrillarin JGI N/AIEA

Proteins Associated with Glyma.06g164800
LocusGene SymbolProtein Name
MED36-2 Mediator Complex 36 gene 2

Expression Patterns of Glyma.06g164800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g164800 not represented in the dataset
Glyma.06g164800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g164800
ParalogEvidenceComments
Glyma.04g200700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g164800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g17310 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g164800
>Glyma.06g164800.1 sequence-type=CDS polypeptide=Glyma.06g164800.1.p locus=Glyma.06g164800 ID=Glyma.06g164800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCCTCCCAGAGGTGGTGGTGGGTTCAGGGGTGGTAGGGGTGACAGAGGTAGAGGAAGGGGTGGCGGTGGAGGAAGAGGAGGAGACAGGGGTACGCCGTTCAAAGCTAGAGGCGGTGGCCGTGGTGGCCGCGGAGGAGGCAGGGGTGGTGGCCGTGGCGGCGGCAGAGGTGGAATGAAGGGAGGTAGCAAGGTTGTGGTTCAGCCCCATAGGCATGATGGCATTTTCATTGCCAAGGGTAAAGAAGATGCTCTTGTTACTAAGAATCTTGTTCCTGGTGAAGCTGTTTACAACGAGAAAAGGATTACCGTTCAGAACGAAGACAGTTCCAAAGATGAGTACAGAGTTTGGAATCCTTTCCGTTCGAAGTTGGCCGCTGCCATCCTTGGTGGTGTTGACAACATATGGATTAAACCTGGTGCCAGAGTCCTTTACCTAGGAGCTGCTTCCGGCACCACTGTTTCTCACGTATCAGATGTTGTTGGCCCAACTGGAGTTGTCTATGCAGTAGAGTTTTCCCATAGAAGTGGTCGTGACTTGGTCAATATGGCAAAGAAGCGAACTAATGTTATACCCATTATTGAAGATGCTAGACATCCAGCTAAGTACAGGATGTTAGTTGGAATGGTTGATGTCATATTTTCTGACGTTGCTCAGCCTGATCAGGCTAGGATTTTGGGGCTGAATGCTTCATATTATCTAAAAACAGGGGGTCATTTTGTTATTTCAATCAAGGCTAACTGCATAGACTCCACAGTCCCTGCTGAGGCAGTGTTTGAAAGCGAAGTGAACAAGTTAAAGGCTGATCAATTCAAACCATTCGAGCAAGTCACCCTTGAACCATTTGAGAGGGACCATGCCTGTGTGGTTGGTGGATACAGAATGCCCAAGAAGAAAAAAGATGCTGCTGAGTAG
Predicted protein sequences of Glyma.06g164800
>Glyma.06g164800.1.p sequence-type=predicted peptide transcript=Glyma.06g164800.1 locus=Glyma.06g164800 ID=Glyma.06g164800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPPRGGGGFRGGRGDRGRGRGGGGGRGGDRGTPFKARGGGRGGRGGGRGGGRGGGRGGMKGGSKVVVQPHRHDGIFIAKGKEDALVTKNLVPGEAVYNEKRITVQNEDSSKDEYRVWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDVVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKTGGHFVISIKANCIDSTVPAEAVFESEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRMPKKKKDAAE*






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