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Report for Sequence Feature Glyma.06g164700

Feature Type:gene_model
Chromosome:Gm06
Start:13632022
stop:13639419
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g164700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G61980.1AT ARF-GAP domain 1 JGI N/AIEA
GO:0043547GO-bp positive regulation of GTPase activity EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0005096GO-mf GTPase activator activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0005543GO-mf phospholipid binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG0521 KOG Putative GTPase activating proteins (GAPs) JGI N/AIEA
PTHR23180Panther CENTAURIN/ARF JGI N/AIEA
PTHR23180:SF22Panther JGI N/AIEA
PF00023PFAM Ankyrin repeat JGI N/AIEA
PF00169PFAM PH domain JGI N/AIEA
PF01412PFAM Putative GTPase activating protein for Arf JGI N/AIEA
PF03114PFAM BAR domain JGI N/AIEA

Expression Patterns of Glyma.06g164700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g164700 not represented in the dataset
Glyma.06g164700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g164700
ParalogEvidenceComments
Glyma.04g200800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g164700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g17295 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g164700
>Glyma.06g164700.1 sequence-type=CDS polypeptide=Glyma.06g164700.1.p locus=Glyma.06g164700 ID=Glyma.06g164700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGCTCCAGTGCATGGAAGAGAGTTCAGAATCGTTACGCTCGAGATGTTTCAAGGAAGGGCTTGGAGAGGCATATGATGGAGACATTTCAATTGCAAGTGCCCTTGAAAATTTTGGAGGAGGGCATAATGATCCTCTATTTGTAACTTTGGGAGGACCTGTCGTGACCAAATTTTCTATTGCTTTGAGAGAAATCAGTACATACAAGGAACTTCTTCGGTCCCAGGCAGAGCACATGCTGAATGACCGGTTACTAAACATGCTAAATGTCGATATCCTAGATGTCAAGGAAGCTAGAAGGCGTTTTGAGAAAGCTTCCCTTGTACATGATCAGGGACGTGAGAAGTTTATGTCATTGAGAAAAAGCACTAGGATGGATATTGCCACTGTCGTAGAAGAGGATTTGCACAATGCAAGAACCTCATTGGAGGAAGCTCGTTTCAATCTGGTTAGTGCTCTCCATAATGTTGAGGCCAAGAAGAGATTTGAGTTTTTGGAGGCTGTCACTGGAGTTATGGATGCTCATCTTCGGTATTATCGACAGGTATATGATGACACGGGATATCAGCTATTACATGAGATGGAGCCTTTCATTATCGAGGTTTTGGCTTATACACAAAAGGCAAGAGAAAGTTACAATGAGAAGCAAATTAGTCTTTGTGAAAGAATGTTGGAGTACAAAAAACATGTTAATCATGAAAGTATGTTGTCCTTGAATGGTCCTTATGACTCTCCCTGTAGAGATGGTCAAGTGCAGCCTTTTTCTAGGATATCAAATAAAGTGGCAGATGCTATAACAGAATCTGCTGAAAATGGAAAGGTTCAAATCATTCGACAAGGATTTCTTTCAAAACGGTCCACAAATCTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGCGGAATGCTTTACTACTTTCGTAAACCATGGAGTGGATTACATAGTGGCAATCAATCATCTTTACACAGAAATTGTGCCACTGACAATAGTGCTGGAATTTTCAGTCGCCTGCTTTCTTCACATTACCATGGATTTATCCCTGATGAAAAATTTGTAGCACGTCATACAGTGAACCTGCTAACATCAACAATCAAGATTGATGCTGAACATTATACATTGCAGGCAGAAAATGCCCTGGATCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCTCCTTATTGAGTGCACAAACACTGCGGCAAACATGTACAATGATAATAGTGTGGCAAAACTTTAGTCACCAATACAAGTATAACATTAGACGTCTTTCTTTGAAGCATCTAGCATTTCTTATCAAATTGAGTGGGGATTCTATAAAAAATGAAAAGCCAATTGAAGTTCTTAGAAAGGTTGGCGGGAATGAAAAATGTGCTGATTGTGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATTTGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTGCATATATCAAAATCACTGGGGAATCTTTTTGCAAACTCAGTTTGGAAGGAACTGTTGCATTCAACAAGTACTTCGCAAACTGATGACACTCCCGATGGTTCATTCAAGACACACAAAAAGTTATTTCATGCAAGAAAACCAGCACATGATGATCCTCTTTCACTAAAGGAGAGGTTCATTCATGCAAAGAAAGCAGTGTACAGACACGTTGTGAAGTCAGATGTGGATGTCATTGCTATTAGTGGGGAAGCAGGTTTTTCTTCCAACATGCCTTCTTCAAGTAATCCAAACACATCATGTAAAACTAAGACTCGACAAGAGGAGGATATACAAGATGGCTCTAGTGTGCTTCACCTGGTATGCTTAACTAGTGATTCTGCAATGGTAGAGCTGCTCCTACAGTATGGTGCAGACGTAAATGCTATTGATTCTAGAGGGAGGACACCTCTACATTACAGCACTATGAGAGGGGAGAGTGCAATTACAAAAGTGCTTTATTACAAGCTTTGTCATTATCCATCCCATGAAGAATATTGCATTTCAATTTTATATTACTTAACGTGTCTTGCAAACCTCAAATTTGCCAATTATTTCAGGGGGGCCAATCCACTTGCCGGAGACAAAGAAGGCAACACTCCTTTTAAGCTTGCACCGGAACCTGACACTGTTGTCAAAGATACTCTTGCTCTAAACCAGCAAACGACATGCCCTCAAAACTTATTAGAAAAATGA
Predicted protein sequences of Glyma.06g164700
>Glyma.06g164700.1.p sequence-type=predicted peptide transcript=Glyma.06g164700.1 locus=Glyma.06g164700 ID=Glyma.06g164700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQLQCMEESSESLRSRCFKEGLGEAYDGDISIASALENFGGGHNDPLFVTLGGPVVTKFSIALREISTYKELLRSQAEHMLNDRLLNMLNVDILDVKEARRRFEKASLVHDQGREKFMSLRKSTRMDIATVVEEDLHNARTSLEEARFNLVSALHNVEAKKRFEFLEAVTGVMDAHLRYYRQVYDDTGYQLLHEMEPFIIEVLAYTQKARESYNEKQISLCERMLEYKKHVNHESMLSLNGPYDSPCRDGQVQPFSRISNKVADAITESAENGKVQIIRQGFLSKRSTNLRGDWKRRYFVLDSRGMLYYFRKPWSGLHSGNQSSLHRNCATDNSAGIFSRLLSSHYHGFIPDEKFVARHTVNLLTSTIKIDAEHYTLQAENALDQMDWMEKITGVIASLLSAQTLRQTCTMIIVWQNFSHQYKYNIRRLSLKHLAFLIKLSGDSIKNEKPIEVLRKVGGNEKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHISKSLGNLFANSVWKELLHSTSTSQTDDTPDGSFKTHKKLFHARKPAHDDPLSLKERFIHAKKAVYRHVVKSDVDVIAISGEAGFSSNMPSSSNPNTSCKTKTRQEEDIQDGSSVLHLVCLTSDSAMVELLLQYGADVNAIDSRGRTPLHYSTMRGESAITKVLYYKLCHYPSHEEYCISILYYLTCLANLKFANYFRGANPLAGDKEGNTPFKLAPEPDTVVKDTLALNQQTTCPQNLLEK*






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