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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G27620.1 | AT | cyclin H;1 | JGI | N/A | IEA |
| GO:0045737 | GO-bp | positive regulation of cyclin-dependent protein serine/threonine kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0045944 | GO-bp | positive regulation of transcription by RNA polymerase II | EnsemblGenomes | N/A | IEA |
| GO:1901409 | GO-bp | positive regulation of phosphorylation of RNA polymerase II C-terminal domain | EnsemblGenomes | N/A | IEA |
| GO:0000307 | GO-cc | cyclin-dependent protein kinase holoenzyme complex | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0016538 | GO-mf | cyclin-dependent protein serine/threonine kinase regulator activity | EnsemblGenomes | N/A | IEA |
| GO:0017025 | GO-mf | TBP-class protein binding | JGI | N/A | IEA |
| KOG2496 | KOG | Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit | JGI | N/A | IEA |
| PTHR10026 | Panther | CYCLIN | JGI | N/A | IEA |
| PTHR10026:SF8 | Panther | CYCLIN-H | JGI | N/A | IEA |
| PF00134 | PFAM | Cyclin, N-terminal domain | JGI | N/A | IEA |
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Glyma.06g164600 not represented in the dataset |
Glyma.06g164600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma06g17280 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g164600.2 sequence-type=transcript locus=Glyma.06g164600 ID=Glyma.06g164600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 AAAATCACGTGAGTCCAATTTGTCCAAGACCCGCAAGCCCAAACATCAGTCATCTCCTTCACAGGAACCCTAGATCTGAAACTTACCTTGACTCCGCTCTGCCACGGCTGAGAAAATAGCGACGCGGAAACACGCTCGTCTTCACGACCCTGCGATCCAGCGCGGCGTGTCCTGCGATTCCTCTCTCCGACGAGTCTCCGCAGGGTGAAGAATTGCGAGGCCAGCCGCCGGTGAAGAATCGCGCGATTCGTCTGGAAATCGCGATTCAAGCACGATTCACCCCCGATACATAGATTCAACCACGATTCAGGAACAAAAACGAGACAACCTTCGATTCGTATTGGTAGAAGCTGgcatcgtatcgaatcgtgcgatacgtatcggtagaagctggtatcgtatcgaatcgtgcgatacgtatcgtgaatcgtaCGATACTAACTACCGTGGTCTGAACCATTTTAATTTGTGGATCAAATAACAAGGCTCCTCGGTTAGAATTCCTGATCGGTCATGGCTGATTTTCAGACCTCTACCCACAGAGCCAAGTGGATTTTCTCTCCTCAACAGCTGGTTGAGAAATATAGAGCTGCCAATCAGAGAGCCAAACAAATTCTAGAGAAGTGTGGAGCAACACTAATGGAAGTAGATGTTGATGGATCGTTGTCATATCCTGAACCCCAAATGACTGCAAAGGATAGTGCTGAAAAGCATTCTCGAACAAAACCTCTTACTATTGAAGAAGAACAATGTATAAAGGTATTTTATGAAAACAAGCTACAAGAAGTATGTAACAATTTCCGCTTCCCTCATAAGATCCAGGCAACAGCCCTTATCTATTTTAAAAGATTCTATCTGCAATGGTCAGTGATGGAACATCAACCAAAACACATTATGTTGACCTGCATATATGCTGCCTGTAAAATAGAAGAAAATCATGTGTCAGCTGAGGAGCTTGGTAAGGGGATATCACAGGATCATCAAATGATTCTCAATAATGAGATGATAGTTTATCAGAGTTTGGAATTTGATCTTATTGTGTATGCACCATATCGCTCAGTTGAAGGTTTTATAAATGATATGGAGGAATTCTTTAATGCTGGTGATAACCAGCTTGAAATGCTCAAGACTTTGCAAGAGACAGCAAGATTTGAAGTTGATAAAATGATGCTTACAGATGCACCACTTTTATTTCCTCCTGGGCAGTTGGCCTTGGCTGCTTTACGCAACTCAAATGCATTCCACAGAGTCATTGACTTTGATAGTTATCTTAGGGGTATTTTTTCCCGTGAGAATTCCATGCATACAATGTCCGAGCTTTCTGAATCACTGGATGCAATTGATTCTTGGGTTAGAAAATACAAAAGTCCTTCTGAGAAGGAATTGAAGCATATCAACCGAAAACTGAAGTCTTGTTGGGGTCATCACTCTCATGACGAGGGCAAGAAGCGGGAGAAGAAATCAAAGCACAAGTCCAAAAAGAGCTCAAATGAAGCTCAAAATATGCCATCTATTGCCTAGCTCATTTCATATGGATGGCAATTTTTTTTTGTTTCTATTTGGATACAAAAAATGACTCGGTCAGTGGCCAAAGGAAAAGGAATCTTTTGAAAACTCCTTCCGCTGGCTTACTAGTGAGTCTGATTTTGTTGCTTCACTTATGTCTTCTTTGTTCCCAAATGAACTTATTGCCTGAAAATGCTTCGATTAAAAATTCCATGCTCGTGGTGTTTTTATTTTGCTTATTTTGCCCTTGCCACATTTCACTTCTACAAATATTTCTGTT
>Glyma.06g164600.1 sequence-type=CDS polypeptide=Glyma.06g164600.1.p locus=Glyma.06g164600 ID=Glyma.06g164600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTGATTTTCAGACCTCTACCCACAGAGCCAAGTGGATTTTCTCTCCTCAACAGCTGGTTGAGAAATATAGAGCTGCCAATCAGAGAGCCAAACAAATTCTAGAGAAGTGTGGAGCAACACTAATGGAAGTAGATGTTGATGGATCGTTGTCATATCCTGAACCCCAAATGACTGCAAAGGATAGTGCTGAAAAGCATTCTCGAACAAAACCTCTTACTATTGAAGAAGAACAATGTATAAAGGTATTTTATGAAAACAAGCTACAAGAAGTATGTAACAATTTCCGCTTCCCTCATAAGATCCAGGCAACAGCCCTTATCTATTTTAAAAGATTCTATCTGCAATGGTCAGTGATGGAACATCAACCAAAACACATTATGTTGACCTGCATATATGCTGCCTGTAAAATAGAAGAAAATCATGTGTCAGCTGAGGAGCTTGGTAAGGGGATATCACAGGATCATCAAATGATTCTCAATAATGAGATGATAGTTTATCAGAGTTTGGAATTTGATCTTATTGTGTATGCACCATATCGCTCAGTTGAAGGTTTTATAAATGATATGGAGGAATTCTTTAATGCTGGTGATAACCAGCTTGAAATGCTCAAGACTTTGCAAGAGACAGCAAGATTTGAAGTTGATAAAATGATGCTTACAGATGCACCACTTTTATTTCCTCCTGGGCAGTTGGCCTTGGCTGCTTTACGCAACTCAAATGCATTCCACAGAGTCATTGACTTTGATAGTTATCTTAGGGGTATTTTTTCCCGTGAGAATTCCATGCATACAATGTCCGAGCTTTCTGAATCACTGGATGCAATTGATTCTTGGGTAATTGTTTCTCATTCTAATGTTTGTCCTTTAACCGAACAAATGTGTAATTCCAAATCAACATTTTGTATTGGCTGGGAACCGTGGGTTACTTCTGTTTTACATGGACCACTGTGTGGCCTTGATTTTGTATGCAGGTTAGAAAATACAAAAGTCCTTCTGAGAAGGAATTGA >Glyma.06g164600.2 sequence-type=CDS polypeptide=Glyma.06g164600.2.p locus=Glyma.06g164600 ID=Glyma.06g164600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTGATTTTCAGACCTCTACCCACAGAGCCAAGTGGATTTTCTCTCCTCAACAGCTGGTTGAGAAATATAGAGCTGCCAATCAGAGAGCCAAACAAATTCTAGAGAAGTGTGGAGCAACACTAATGGAAGTAGATGTTGATGGATCGTTGTCATATCCTGAACCCCAAATGACTGCAAAGGATAGTGCTGAAAAGCATTCTCGAACAAAACCTCTTACTATTGAAGAAGAACAATGTATAAAGGTATTTTATGAAAACAAGCTACAAGAAGTATGTAACAATTTCCGCTTCCCTCATAAGATCCAGGCAACAGCCCTTATCTATTTTAAAAGATTCTATCTGCAATGGTCAGTGATGGAACATCAACCAAAACACATTATGTTGACCTGCATATATGCTGCCTGTAAAATAGAAGAAAATCATGTGTCAGCTGAGGAGCTTGGTAAGGGGATATCACAGGATCATCAAATGATTCTCAATAATGAGATGATAGTTTATCAGAGTTTGGAATTTGATCTTATTGTGTATGCACCATATCGCTCAGTTGAAGGTTTTATAAATGATATGGAGGAATTCTTTAATGCTGGTGATAACCAGCTTGAAATGCTCAAGACTTTGCAAGAGACAGCAAGATTTGAAGTTGATAAAATGATGCTTACAGATGCACCACTTTTATTTCCTCCTGGGCAGTTGGCCTTGGCTGCTTTACGCAACTCAAATGCATTCCACAGAGTCATTGACTTTGATAGTTATCTTAGGGGTATTTTTTCCCGTGAGAATTCCATGCATACAATGTCCGAGCTTTCTGAATCACTGGATGCAATTGATTCTTGGGTTAGAAAATACAAAAGTCCTTCTGAGAAGGAATTGAAGCATATCAACCGAAAACTGAAGTCTTGTTGGGGTCATCACTCTCATGACGAGGGCAAGAAGCGGGAGAAGAAATCAAAGCACAAGTCCAAAAAGAGCTCAAATGAAGCTCAAAATATGCCATCTATTGCCTAG
>Glyma.06g164600.1.p sequence-type=predicted peptide transcript=Glyma.06g164600.1 locus=Glyma.06g164600 ID=Glyma.06g164600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MADFQTSTHRAKWIFSPQQLVEKYRAANQRAKQILEKCGATLMEVDVDGSLSYPEPQMTAKDSAEKHSRTKPLTIEEEQCIKVFYENKLQEVCNNFRFPHKIQATALIYFKRFYLQWSVMEHQPKHIMLTCIYAACKIEENHVSAEELGKGISQDHQMILNNEMIVYQSLEFDLIVYAPYRSVEGFINDMEEFFNAGDNQLEMLKTLQETARFEVDKMMLTDAPLLFPPGQLALAALRNSNAFHRVIDFDSYLRGIFSRENSMHTMSELSESLDAIDSWVIVSHSNVCPLTEQMCNSKSTFCIGWEPWVTSVLHGPLCGLDFVCRLENTKVLLRRN* >Glyma.06g164600.2.p sequence-type=predicted peptide transcript=Glyma.06g164600.2 locus=Glyma.06g164600 ID=Glyma.06g164600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MADFQTSTHRAKWIFSPQQLVEKYRAANQRAKQILEKCGATLMEVDVDGSLSYPEPQMTAKDSAEKHSRTKPLTIEEEQCIKVFYENKLQEVCNNFRFPHKIQATALIYFKRFYLQWSVMEHQPKHIMLTCIYAACKIEENHVSAEELGKGISQDHQMILNNEMIVYQSLEFDLIVYAPYRSVEGFINDMEEFFNAGDNQLEMLKTLQETARFEVDKMMLTDAPLLFPPGQLALAALRNSNAFHRVIDFDSYLRGIFSRENSMHTMSELSESLDAIDSWVRKYKSPSEKELKHINRKLKSCWGHHSHDEGKKREKKSKHKSKKSSNEAQNMPSIA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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