SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.06g161900

Feature Type:gene_model
Chromosome:Gm06
Start:13377091
stop:13378921
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g161900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G21065.1AT Tetratricopeptide repeat (TPR)-like superfamily protein JGI N/AIEA
GO:0009451GO-bp RNA modification EnsemblGenomesN/AIEA
GO:0090305GO-bp nucleic acid phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0043231GO-cc intracellular membrane-bounded organelle EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0004519GO-mf endonuclease activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
PTHR24015Panther FAMILY NOT NAMED JGI N/AIEA
PF01535PFAM PPR repeat JGI N/AIEA

Proteins Associated with Glyma.06g161900
LocusGene SymbolProtein Name
PPR50 Psudo-Response Regulator gene 50

Expression Patterns of Glyma.06g161900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g161900
ParalogEvidenceComments
Glyma.04g203500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g161900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g16980 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g161900
>Glyma.06g161900.1 sequence-type=CDS polypeptide=Glyma.06g161900.1.p locus=Glyma.06g161900 ID=Glyma.06g161900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAGATACTACCACTCCAACATGAAGAGCGTGTACAACCTCCACGCCACGCTGATAAAAAATGCCCAACACGACAACCCTCTCTCCCTCCGAACCTTCATTCTCCGCTGCGCCAACTCATCGTCACCACCCGACACCGCCCGTTACGCCGCCGCCGTGCTCCTCCGCTTCCCCATCCCCGGCGACCCCTTCCCCTACAACGCCGTCATTCGCCACGTGGCACTCCACGCTCCCTCCCTCGCCCTCGCCCTCTTCTCTCACATGCACCGCACCAACGTCCCCTTCGACCATTTCACCTTCCCCCTCATCCTTAAATCCTCAAAACTAAACCCTCATTGCATTCACACCCTCGTTCTCAAACTCGGGTTTCACTCCAATATCTATGTCCAAAACGCGCTTATTAACTCCTACGGCACCTCCGGGTCCCTCCACGCGTCCCTCAAACTGTTCGACGAAATGCCCCGCCGAGACTTGATCTCTTGGTCCTCTTTAATCTCTTGTTTCGCTAAACGCGGGCTCCCCGATGAAGCCCTAACGCTTTTCCAACAAATGCAGCTTAAAGAGAGTGATATCTTACCCGATGGGGTTGTCATGCTGAGTGTGATATCCGCGGTTTCGAGCTTGGGTGCCTTGGAATTGGGTATCTGGGTTCACGCTTTTATTTCCAGGATCGGGGTTAACCTTACTGTTTCATTGGGTTCTGCACTTATTGACATGTATTCGAGATGCGGGGACATTGATCGTTCGGTTAAGGTGTTCGATGAAATGCCTCACAGGAATGTTGTCACGTGGACCGCGCTGATTAACGGGCTTGCCGTGCATGGACGTGGTAGGGAGGCTCTGGAGGCGTTTTATGACATGGTGGAGTCCGGTTTGAAGCCTGATCGCATCGCATTTATGGGTGTGTTGGTGGCTTGTAGTCATGGAGGGCTTGTAGAGGAGGGGAGACGGGTTTTTAGTAGCATGTGGAGTGAGTATGGCATTGAACCGGCACTTGAGCATTATGGTTGTATGGTTGATCTTCTTGGCCGTGCTGGCATGGTGCTTGAAGCTTTCGATTTCGTGGAGGGTATGCGTGTTAGGCCAAATTCGGTTATTTGGAGGACCTTGCTTGGAGCATGTGTCAATCACAATCTCCTTGTGCTGGCTGAGAAGGCCAAGGAGAGGATCAAGGAGTTGGACCCTCATCATGATGGTGATTATGTACTTTTGTCGAATGCTTATGGTGGAGTTGGTAACTGGGTTAAGAAGGAGGGTGTGAGGAATTCAATGAGGGAGAGTAAAATTGTCAAAGAGCCTGGCCTTAGTTTGGTTCACATTGATCAAGTGGCTCATGAGTTTGTATCGGGAGATAATTCTCATCCGCAGTGGGAGGAGATTACAAGATTTTTAGGTTCAGTTATTGACACTGTGAAACTTGGAGGCTACACCCCTAGTACTAAAAATGTGCTGCATGACATTCAAGAGGAAGAGAAGGAACATTCTCTGGGCTATCACAGTGAGAAATTGGCAGTGGCTTTTGTGCTTCTTTATCATAGGGATAGAAAAACCATTAGGGTCATTAAGAATCTTAGGATATGTTATGACTGTCATAGTTTCATGAAGCATGTTTCGGGTTTCTTTGACAGAGATATAGTTATTAGGGATCGAAGTCGGTTCCATCATTTTAGGAAGGGATCGTGTTCTTGCCGAGATTTTTGGTAA
Predicted protein sequences of Glyma.06g161900
>Glyma.06g161900.1.p sequence-type=predicted peptide transcript=Glyma.06g161900.1 locus=Glyma.06g161900 ID=Glyma.06g161900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARYYHSNMKSVYNLHATLIKNAQHDNPLSLRTFILRCANSSSPPDTARYAAAVLLRFPIPGDPFPYNAVIRHVALHAPSLALALFSHMHRTNVPFDHFTFPLILKSSKLNPHCIHTLVLKLGFHSNIYVQNALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESDILPDGVVMLSVISAVSSLGALELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDRIAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEGMRVRPNSVIWRTLLGACVNHNLLVLAEKAKERIKELDPHHDGDYVLLSNAYGGVGNWVKKEGVRNSMRESKIVKEPGLSLVHIDQVAHEFVSGDNSHPQWEEITRFLGSVIDTVKLGGYTPSTKNVLHDIQEEEKEHSLGYHSEKLAVAFVLLYHRDRKTIRVIKNLRICYDCHSFMKHVSGFFDRDIVIRDRSRFHHFRKGSCSCRDFW*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo