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Report for Sequence Feature Glyma.06g156000

Feature Type:gene_model
Chromosome:Gm06
Start:12797375
stop:12803959
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g156000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G09230.7AT sirtuin 2 JGI N/AIEA
GO:0006471GO-bp protein ADP-ribosylation EnsemblGenomesN/AIEA
GO:0006476GO-bp protein deacetylation EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0005759GO-cc mitochondrial matrix EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0034979GO-mf NAD-dependent protein deacetylase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0070403GO-mf NAD+ binding EnsemblGenomesN/AIEA
GO:0070403GO-mf NAD+ binding JGI N/AIEA
KOG2683 KOG Sirtuin 4 and related class II sirtuins (SIR2 family) JGI N/AIEA
PTHR11085Panther CHROMATIN REGULATORY PROTEIN SIR2 JGI N/AIEA
PF02146PFAM Sir2 family JGI N/AIEA

Proteins Associated with Glyma.06g156000
LocusGene SymbolProtein Name
SRT2 NAD-dependent protein deacylase SRT2-like

Expression Patterns of Glyma.06g156000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g156000 not represented in the dataset
Glyma.06g156000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g156000
ParalogEvidenceComments
Glyma.04g210000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g156000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g16260 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g156000
>Glyma.06g156000.2 sequence-type=transcript locus=Glyma.06g156000 ID=Glyma.06g156000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACGTGGAGGTGATTGAACATAATGAACGAAAATCGAGAGTAAAAGGCGAAGGAGCGGTGGGAGCGATGCGCATGGTTGTTAACGACGCATTCCTCCCATTAACTAAATGGCTATGTCTTTACCTCTTCGTTTTCATTCCTCATCTTTCTCTCTCACTTCTCTTGGGGTTGTGAGAAAAGTGCTAGGGAGTCTTATAACAGCATTGTGTCACTGCAATTTATTCCATCTTCATAGATATTGTTCAACCAAGGAGTGGACATTCGCACTTAGCAAAAAGAGGTGGAAGACTAATATCGTGTAAGGTTTGTGCGAGGCTGGTACATACAATGTGCCGGATCTCTGTCCCTGGGACCTTACCAAGAACTGATGGAAAGACCTCAACTAATATCTCAAGGGATAAGAAGACAGTTCCAGAAGCAGATCCTCCCAGTATCAAAGATGTTCAGCTTTTGTATGAATTTTTGGACCGGAGTACCAAGCTCACAGTATTGACTGGAGCTGGAATCAGTACAGAGTGTGGCATCCCTGACTACAGAAGCCCCAATGGAGCTTATAGTTCTGGTTTCAAGCCAATAACCCATCAGGAGTTTCTCCGTTCAAGTCGAGCTCGGAGGAGATATTGGGCTAGGAGCTATGCTGGATGGAGGCGATTTACAGCAGCACAACCATCTGCTGCCCATACTGCATTGGCTACAATAGATAGAGCTGGCCGAATCGACTTAATGATTACCCAAAATGTTGATAGGTTGCATCATCGTGCTGGTAGCAACCCATTAGAAATACATGGGACTGTATACACTGTAATATGTATAGATTGTGGATATTCCTTTTGCCGGAGCTTGTTTCAGGACCAGTTGAAGGCCCTTAATCCAAAGTGGGCAGAAGCAATTGATAACTTGGACCATGGAAACCCTGGATCAGATAAGAGCTTTGGCATGAAACAAAGACCTGATGGTGATATTGAGATTGATGAAAGATTTTGGGAGGAGGATTTTATCATCCCAACTTGTCACAAGTGCAATGGAGTTCTCAAACCTGATGTTGTCTTCTTTGGTGATAATGTTCCCAAGGACAGAGCAGATATGGCAATGGAAGCGTCTAGAAGATGTGATGCTTTTCTTGTACTTGGGTCATCTCTGATGACCATGTCTGCTTTTCGACTTGTCAGGGCAGCTCATGAAGCTGGTGCTGCTACTGCAATTGTGAACATAGGTGTGACGCGTGCTGATAATTTTGTGCCCTTGAAAATAAATGCACGATTGGGTGAGATCCTGCCAAGACTACTTGACATGGGATCTATAAGCATACCAGCTGTGTAATGATAGATGAAAAAATGGTATCAAGTTGCATTCAAATCAGTAACCTGTATTTTATTCCATCATTCTTGTCCCCATGTAAAGATATTGACGAGGAATTATATATAAAGTAACTGATATTTGTGTT

>Glyma.06g156000.3 sequence-type=transcript locus=Glyma.06g156000 ID=Glyma.06g156000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACGTGGAGGTGATTGAACATAATGAACGAAAATCGAGAGTAAAAGGCGAAGGAGCGGTGGGAGCGATGCGCATGGTTGTTAACGACGCATTCCTCCCATTAACTAAATGGCTATGTCTTTACCTCTTCGTTTTCATTCCTCATCTTTCTCTCTCACTTCTCTTGGGGTTGTGAGAAAAGTGCTAGGGAGTCTTATAACAGATATTGTTCAACCAAGGAGTGGACATTCGCACTTAGCAAAAAGAGGTGGAAGACTAATATCGTGTAAGGTTTGTGCGAGGCTGGTACATACAATGTGCCGGATCTCTGTCCCTGGGACCTTACCAAGAACTGATGGAAAGACCTCAACTAATATCTCAAGGGATAAGAAGACAGTTCCAGAAGCAGATCCTCCCAGTATCAAAGATGTTCAGCTTTTGTATGAATTTTTGGACCGGAGTACCAAGCTCACAGTATTGACTGGAGCTGGAATCAGTACAGAGTGTGGCATCCCTGACTACAGAAGCCCCAATGGAGCTTATAGTTCTGGTTTCAAGCCAATAACCCATCAGGAGTTTCTCCGTTCAAGTCGAGCTCGGAGGAGATATTGGGCTAGGAGCTATGCTGGATGGAGGCGATTTACAGCAGCACAACCATCTGCTGCCCATACTGCATTGGCTACAATAGATAGAGCTGGCCGAATCGACTTAATGATTACCCAAAATGTTGATAGGTTGCATCATCGTGCTGGTAGCAACCCATTAGAAATACATGGGACTGTATACACTGTAATATGTATAGATTGTGGATATTCCTTTTGCCGGAGCTTGTTTCAGGACCAGTTGAAGGCCCTTAATCCAAAGTGGGCAGAAGCAATTGATAACTTGGACCATGGAAACCCTGGATCAGATAAGAGCTTTGGCATGAAACAAAGACCTGATGGTGATATTGAGATTGATGAAAGATTTTGGGAGGAGGATTTTATCATCCCAACTTGTCACAAGTGCAATGGAGTTCTCAAACCTGATGTTGTCTTCTTTGGTGATAATGTTCCCAAGGACAGAGCAGATATGGCAATGGAAGCGTCTAGAAGATGTGATGCTTTTCTTGTACTTGGGTCATCTCTGATGACCATGTCTGCTTTTCGACTTGTCAGGGCAGCTCATGAAGCTGGTGCTGCTACTGCAATTGTGAACATAGGTGTGACGCGTGCTGATAATTTTGTGCCCTTGAAAATAAATGCACGATTGGATCCTGCCAAGACTACTTGACATGGGATCTATAAGCATACCAGCTGTGTAATGATAGATGAAAAAATGGTATCAAGTTGCATTCAAATCAGTAACCTGTATTTTATTCCATCATTCTTGTCCCCATGTAAAGATATTGACGAGGAATTATATATAAAGTAACTGATATTTGTGTT
Coding sequences of Glyma.06g156000
>Glyma.06g156000.1 sequence-type=CDS polypeptide=Glyma.06g156000.1.p locus=Glyma.06g156000 ID=Glyma.06g156000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTATGTCTTTACCTCTTCGTTTTCATTCCTCATCTTTCTCTCTCACTTCTCTTGGGGTTGTGAGAAAAGTGCTAGGGAGTCTTATAACAGATATTGTTCAACCAAGGAGTGGACATTCGCACTTAGCAAAAAGAGGTGGAAGACTAATATCGTGTAAGGTTTGTGCGAGGCTGGTACATACAATGTGCCGGATCTCTGTCCCTGGGACCTTACCAAGAACTGATGGAAAGACCTCAACTAATATCTCAAGGGATAAGAAGACAGTTCCAGAAGCAGATCCTCCCAGTATCAAAGATGTTCAGCTTTTGTATGAATTTTTGGACCGGAGTACCAAGCTCACAGTATTGACTGGAGCTGGAATCAGTACAGAGTGTGGCATCCCTGACTACAGAAGCCCCAATGGAGCTTATAGTTCTGGTTTCAAGCCAATAACCCATCAGGAGTTTCTCCGTTCAAGTCGAGCTCGGAGGAGATATTGGGCTAGGAGCTATGCTGGATGGAGGCGATTTACAGCAGCACAACCATCTGCTGCCCATACTGCATTGGCTACAATAGATAGAGCTGGCCGAATCGACTTAATGATTACCCAAAATGTTGATAGGTTGCATCATCGTGCTGGTAGCAACCCATTAGAAATACATGGGACTGTATACACTGTAATATGTATAGATTGTGGATATTCCTTTTGCCGGAGCTTGTTTCAGGACCAGTTGAAGGCCCTTAATCCAAAGTGGGCAGAAGCAATTGATAACTTGGACCATGGAAACCCTGGATCAGATAAGAGCTTTGGCATGAAACAAAGACCTGATGGTGATATTGAGATTGATGAAAGATTTTGGGAGGAGGATTTTATCATCCCAACTTGTCACAAGTGCAATGGAGTTCTCAAACCTGATGTTGTCTTCTTTGGTGATAATGTTCCCAAGGACAGAGCAGATATGGCAATGGAAGCGTCTAGAAGATGTGATGCTTTTCTTGTACTTGGGTCATCTCTGATGACCATGTCTGCTTTTCGACTTGTCAGGGCAGCTCATGAAGCTGGTGCTGCTACTGCAATTGTGAACATAGGTGTGACGCGTGCTGATAATTTTGTGCCCTTGAAAATAAATGCACGATTGGGTGAGATCCTGCCAAGACTACTTGACATGGGATCTATAAGCATACCAGCTGTGTAA

>Glyma.06g156000.2 sequence-type=CDS polypeptide=Glyma.06g156000.2.p locus=Glyma.06g156000 ID=Glyma.06g156000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGCCGGATCTCTGTCCCTGGGACCTTACCAAGAACTGATGGAAAGACCTCAACTAATATCTCAAGGGATAAGAAGACAGTTCCAGAAGCAGATCCTCCCAGTATCAAAGATGTTCAGCTTTTGTATGAATTTTTGGACCGGAGTACCAAGCTCACAGTATTGACTGGAGCTGGAATCAGTACAGAGTGTGGCATCCCTGACTACAGAAGCCCCAATGGAGCTTATAGTTCTGGTTTCAAGCCAATAACCCATCAGGAGTTTCTCCGTTCAAGTCGAGCTCGGAGGAGATATTGGGCTAGGAGCTATGCTGGATGGAGGCGATTTACAGCAGCACAACCATCTGCTGCCCATACTGCATTGGCTACAATAGATAGAGCTGGCCGAATCGACTTAATGATTACCCAAAATGTTGATAGGTTGCATCATCGTGCTGGTAGCAACCCATTAGAAATACATGGGACTGTATACACTGTAATATGTATAGATTGTGGATATTCCTTTTGCCGGAGCTTGTTTCAGGACCAGTTGAAGGCCCTTAATCCAAAGTGGGCAGAAGCAATTGATAACTTGGACCATGGAAACCCTGGATCAGATAAGAGCTTTGGCATGAAACAAAGACCTGATGGTGATATTGAGATTGATGAAAGATTTTGGGAGGAGGATTTTATCATCCCAACTTGTCACAAGTGCAATGGAGTTCTCAAACCTGATGTTGTCTTCTTTGGTGATAATGTTCCCAAGGACAGAGCAGATATGGCAATGGAAGCGTCTAGAAGATGTGATGCTTTTCTTGTACTTGGGTCATCTCTGATGACCATGTCTGCTTTTCGACTTGTCAGGGCAGCTCATGAAGCTGGTGCTGCTACTGCAATTGTGAACATAGGTGTGACGCGTGCTGATAATTTTGTGCCCTTGAAAATAAATGCACGATTGGGTGAGATCCTGCCAAGACTACTTGACATGGGATCTATAAGCATACCAGCTGTGTAA

>Glyma.06g156000.3 sequence-type=CDS polypeptide=Glyma.06g156000.3.p locus=Glyma.06g156000 ID=Glyma.06g156000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTATGTCTTTACCTCTTCGTTTTCATTCCTCATCTTTCTCTCTCACTTCTCTTGGGGTTGTGAGAAAAGTGCTAGGGAGTCTTATAACAGATATTGTTCAACCAAGGAGTGGACATTCGCACTTAGCAAAAAGAGGTGGAAGACTAATATCGTGTAAGGTTTGTGCGAGGCTGGTACATACAATGTGCCGGATCTCTGTCCCTGGGACCTTACCAAGAACTGATGGAAAGACCTCAACTAATATCTCAAGGGATAAGAAGACAGTTCCAGAAGCAGATCCTCCCAGTATCAAAGATGTTCAGCTTTTGTATGAATTTTTGGACCGGAGTACCAAGCTCACAGTATTGACTGGAGCTGGAATCAGTACAGAGTGTGGCATCCCTGACTACAGAAGCCCCAATGGAGCTTATAGTTCTGGTTTCAAGCCAATAACCCATCAGGAGTTTCTCCGTTCAAGTCGAGCTCGGAGGAGATATTGGGCTAGGAGCTATGCTGGATGGAGGCGATTTACAGCAGCACAACCATCTGCTGCCCATACTGCATTGGCTACAATAGATAGAGCTGGCCGAATCGACTTAATGATTACCCAAAATGTTGATAGGTTGCATCATCGTGCTGGTAGCAACCCATTAGAAATACATGGGACTGTATACACTGTAATATGTATAGATTGTGGATATTCCTTTTGCCGGAGCTTGTTTCAGGACCAGTTGAAGGCCCTTAATCCAAAGTGGGCAGAAGCAATTGATAACTTGGACCATGGAAACCCTGGATCAGATAAGAGCTTTGGCATGAAACAAAGACCTGATGGTGATATTGAGATTGATGAAAGATTTTGGGAGGAGGATTTTATCATCCCAACTTGTCACAAGTGCAATGGAGTTCTCAAACCTGATGTTGTCTTCTTTGGTGATAATGTTCCCAAGGACAGAGCAGATATGGCAATGGAAGCGTCTAGAAGATGTGATGCTTTTCTTGTACTTGGGTCATCTCTGATGACCATGTCTGCTTTTCGACTTGTCAGGGCAGCTCATGAAGCTGGTGCTGCTACTGCAATTGTGAACATAGGTGTGACGCGTGCTGATAATTTTGTGCCCTTGAAAATAAATGCACGATTGGATCCTGCCAAGACTACTTGA
Predicted protein sequences of Glyma.06g156000
>Glyma.06g156000.1.p sequence-type=predicted peptide transcript=Glyma.06g156000.1 locus=Glyma.06g156000 ID=Glyma.06g156000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAMSLPLRFHSSSFSLTSLGVVRKVLGSLITDIVQPRSGHSHLAKRGGRLISCKVCARLVHTMCRISVPGTLPRTDGKTSTNISRDKKTVPEADPPSIKDVQLLYEFLDRSTKLTVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQEFLRSSRARRRYWARSYAGWRRFTAAQPSAAHTALATIDRAGRIDLMITQNVDRLHHRAGSNPLEIHGTVYTVICIDCGYSFCRSLFQDQLKALNPKWAEAIDNLDHGNPGSDKSFGMKQRPDGDIEIDERFWEEDFIIPTCHKCNGVLKPDVVFFGDNVPKDRADMAMEASRRCDAFLVLGSSLMTMSAFRLVRAAHEAGAATAIVNIGVTRADNFVPLKINARLGEILPRLLDMGSISIPAV*

>Glyma.06g156000.2.p sequence-type=predicted peptide transcript=Glyma.06g156000.2 locus=Glyma.06g156000 ID=Glyma.06g156000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MCRISVPGTLPRTDGKTSTNISRDKKTVPEADPPSIKDVQLLYEFLDRSTKLTVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQEFLRSSRARRRYWARSYAGWRRFTAAQPSAAHTALATIDRAGRIDLMITQNVDRLHHRAGSNPLEIHGTVYTVICIDCGYSFCRSLFQDQLKALNPKWAEAIDNLDHGNPGSDKSFGMKQRPDGDIEIDERFWEEDFIIPTCHKCNGVLKPDVVFFGDNVPKDRADMAMEASRRCDAFLVLGSSLMTMSAFRLVRAAHEAGAATAIVNIGVTRADNFVPLKINARLGEILPRLLDMGSISIPAV*

>Glyma.06g156000.3.p sequence-type=predicted peptide transcript=Glyma.06g156000.3 locus=Glyma.06g156000 ID=Glyma.06g156000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAMSLPLRFHSSSFSLTSLGVVRKVLGSLITDIVQPRSGHSHLAKRGGRLISCKVCARLVHTMCRISVPGTLPRTDGKTSTNISRDKKTVPEADPPSIKDVQLLYEFLDRSTKLTVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQEFLRSSRARRRYWARSYAGWRRFTAAQPSAAHTALATIDRAGRIDLMITQNVDRLHHRAGSNPLEIHGTVYTVICIDCGYSFCRSLFQDQLKALNPKWAEAIDNLDHGNPGSDKSFGMKQRPDGDIEIDERFWEEDFIIPTCHKCNGVLKPDVVFFGDNVPKDRADMAMEASRRCDAFLVLGSSLMTMSAFRLVRAAHEAGAATAIVNIGVTRADNFVPLKINARLDPAKTT*






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