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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G63910.1 | AT | farnesylcysteine lyase | JGI | N/A | IEA |
| GO:0030327 | GO-bp | prenylated protein catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0030328 | GO-bp | prenylcysteine catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0030328 | GO-bp | prenylcysteine catabolic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005774 | GO-cc | vacuolar membrane | EnsemblGenomes | N/A | IEA |
| GO:0001735 | GO-mf | prenylcysteine oxidase activity | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0016670 | GO-mf | oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor | EnsemblGenomes | N/A | IEA |
| GO:0016670 | GO-mf | oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor | JGI | N/A | IEA |
| PTHR15944 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PF00646 | PFAM | F-box domain | JGI | N/A | IEA |
| PF01593 | PFAM | Flavin containing amine oxidoreductase | JGI | N/A | IEA |
| PF07156 | PFAM | Prenylcysteine lyase | JGI | N/A | IEA |
| PWY-6577 | SoyCyc9 | farnesylcysteine salvage pathway | Plant Metabolic Network | ISS | |
| GN7V-46057 | SoyCyc9-rxn | Prenylcysteine oxidase | Plant Metabolic Network | ISS |
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Glyma.06g155700 not represented in the dataset |
Glyma.06g155700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.04g210300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
>Glyma.06g155700.1 sequence-type=CDS polypeptide=Glyma.06g155700.1.p locus=Glyma.06g155700 ID=Glyma.06g155700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCTTTTGTTTCTTCCCGATGATGTTTTCGCCATCGTTTCTCGGTTCATGTCGCCGAGAGATGTGTGCAATCTTTGCCTATGCTGCAAGAGCTTAAACGCTCTTGTGGCATCCGAGAAACTCTGGCTCACGCAATGTGACTTATTGAGCACAGTGCCTCACAAGGACCTTGTGGAATGGAGAAAGGGTGTGGCTTCTTACAAAGCGCTTTGTCGTTTTCTGATGAGTGTGAAACCTTTGATTGGAATATGGGTTCATCAAAATCCTGAGCTTGGGAACGTGGTGTATGTGATGCCGGGTTTTGTTTCTGTTGTTGGGTGCAGGATAATCCCTCAGGAGCTTGGTCCTTTGGGGATCGAAGAGGGTCCTATACTGTGGGCTTCTGTGTTTGAGGTTGTTAGTGACTTGGATGGTTCCATGATGTTTTTCCTTCATGGGAGGGAGAAGGGGGTGAATTATGTTTATCCGGGTTCGGTCAAGGTTGCGGACAGGTCCTGCAATGTGCTGTTGCTTGAGGTTGAACCCGGGGGTTGTAGGAATGTTAGTGCTTTGTTGCAGAGTAAGAGTTTTGTGCACCACTCGGGCGTGGAGGAGTCGTCGTCGTCGAGGAAGGTTTGTAGGTCAAATAGCGATGTTTCTAGTTCACAAAGGGTGGTTGGAAATGGTGAAGGGATGGTTAGTTTTGGGAAGTTAGCTTTCAGTGATAGGAGGAAGTTGCTTGAGGTTACTACTAGTCAGGTTCGGCAAAAGGTTCCAGATAAGATGATCGGACCGTTGTTTCCTGGGTTGAGGGATGATGAGGAGAATTTTCAGAAGGATTTGGTGCTTCTGTGGAAAAGGAGATCACTTCTTAGTCAAATGTATAAGGTTGGTAGTGGTCAGAATGATGAGTATAAGACGAGTTCTCAAGAGGCGGTTGATCCAACGCAGTTAGAATTGGATGATGTTAGGGCGAGTTTTGACCGTTCAAGGTCTATCTCTCATCCTCTGCCTGAGGAGGATGGTCACACTCAATGCATCAAGAGGAAGGGTTTTCGGGGATATGTCTGGAATGGCATTAAACAAATCCTTGGAAGATCGAATACGATGAATGCAAGTCCGTTAGTTGCCAAGAAGCATACTTCAAACGGCGAGATTAGGCAGGCGCGGCTTCAAGAATTTCTTAGATCAAGTGACACAGTAAGACTAATGTTAAAAGCTTCAACTGTGAAGCTATCTTCGTATCGAGCATGGCCAAATATGCATGACAGTCGGTTTGCGCTTTACAAGTTGCCATTGCGGGTTCCCAAAGATGACCAAGAATATGCTGGTTTATGGGGAGGAACTTTTGGTTGGCCTCCTGGAAAGCCTTCTGAAGACAAGCCTGGAAAGGCTTTATTCTTTCTTCTGCTCTCTTATGAGGAGTTCCAGGGACAACAGCTTCTCATTGCAACAAAAATTTTGGAAGGCACACACTATGTGTTACATCCTAACGGTTCAGCAATGTTTACAGCAAATATCAATGATCCTTCATCCGAACCCTTTCCCTGGGACACTGATGCAGACTCGGTTCCAGTGAATATCAAGCAAGCTTTCGTGGGAGAGGGTATTGCAAGTGGTTACGGGTTCAGATACCCTGGATCAAAGCCTGGTTCCCTCTTTGTTTTAGAAAATGGTATCCTTGCCTTCATTTGGAAGGAGTCAAGGGCTGTTTTGAACTTGCAAAGACTTAACTTGCAAGAACTTTTGAAGAAGGGTGAAAGGGTACCTTCTCTGCCTCCGGTTACCAATTTTTCATATCTGACAAAGTCCTACTCGAATGTGTTTGCTGGCTTCCCTAGCTCTTCCAATTTTTTGTCTTCACCAAGCAAGAGGTGTCAGCGATGCAAGGCAATGGCAAAGCCAAGAAGATCAAAGATGATGTCTTTGAAACTCCCTTTCCTGTTGACCTTGTTCCTCGCACTCTCCCAAGCTCAACCGCATTCCGATGATCCACCGCCGCCACCCTCCTCCAACGTCTGCGTCATCGGCGCTGGCATCGGTGGCTCCTCCGTCGCTCACTTCCTCCGCAAATACTCGCCGTCCTCCACTCCCTCCACCAAAATCCGAGTGTTCGAGCGCAACGGCCGCGTCGGGGGACGCATCGCCACCGTGACGGTGGCGGGCGAGACCTTCGAGGCCGGAGCGTCCATTCTCCATCCAAAGAACCTGCACACAGTGGATTACGTTAAGATCCTGAAGCTGAAGGTCAAAGAGCCGACCGCGTCGGAGGATTCCCTCTCTCTCGGCATTTGGGATGGGAACAAGTTCGTTTTCAAAACGGTGTCGCCGCTTAGTTCCACTGTTCCCCTCATCGATAAGCTTCTCAAACTTCCGTTTGTTAATACTCTCGTATCGTTCGTTAATTCCGCACTCATGTTCGTTCGCTACGGCTTCTCGCTCTTTAAGATGCAGAACTTCGTTGAGATTGCTGTGGATAAATTCGTAAAGTACTATGAAGATCCTGGTTCAAGACCTATTTTTGAGACTGTGGATGAGATGCTGCAGTGGGCTGGTCTGTATAATCTTACTACCAGGACTTTGCGGGATGAATTGGTGGATGCTGGGTTGTCTACCTCGTTGATCAATGAACTTGTTACTGTCATCACACGCATTAATTATGGCCAGAGTGTCTCCATGAGTGGGTTGGGTGGTGTGGTTTCTCTAGCAGGATCAGGTGGAGGATTATGGTCCATCGAAGGAGGCAACTGGCAAATGGCTGCTGGACTGATTAATCAGTCAGATGTGGCATTACACCTGCATGAAGAAATAAAATCTGTTGCTGACCTTGGAGATTACTACGAACTCAACTCAACAAAAGGAAACAGTTACAGATGTGAAGTTGCTGTGGTTGCTACACCACTGGATGAGTTAGATATTCAATTTATTCCTCCAATTTCAATTCCTGAGAGAAAATTACAGCACACATTTACAACTTTTGTCAGGGGCCTTCTAAACCCTGCATATTTTGGTCTGAAGGCTGTGACAAAAATTCCAGATCTTGTGGGCACAATAGAGGACCCTGAGCTTCCATTTTCATGCATTGCAGTTCTCAAGAAGCACAATGAAAAAGAATCTACTTATAAATTATTTTCTCGTCAACCAATGGCAGACACATTACTGGATAGCATCTTCAGTGTGAGGAAGGAGACCATTCGGATAAACTGGGCTGCATATCCTCATTACCACGCCCCAGAAGTATTTGCACCATTTATATTGGACGGGCGACATCTATACTACGTTAATGCATTTGAAAATGCAGCTAGCACCATGGAGACAAGTGCTGTGGCAGCTGAGAATATTGCCCGACTCATACTGTCAAGATATTTTGGCCAAGTAATTGTGCATTCATCTAATTTGTCTGCAAGTTCTCAAGGAGAGGGTACTCATTTAGATTTGTGA
>Glyma.06g155700.1.p sequence-type=predicted peptide transcript=Glyma.06g155700.1 locus=Glyma.06g155700 ID=Glyma.06g155700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLLFLPDDVFAIVSRFMSPRDVCNLCLCCKSLNALVASEKLWLTQCDLLSTVPHKDLVEWRKGVASYKALCRFLMSVKPLIGIWVHQNPELGNVVYVMPGFVSVVGCRIIPQELGPLGIEEGPILWASVFEVVSDLDGSMMFFLHGREKGVNYVYPGSVKVADRSCNVLLLEVEPGGCRNVSALLQSKSFVHHSGVEESSSSRKVCRSNSDVSSSQRVVGNGEGMVSFGKLAFSDRRKLLEVTTSQVRQKVPDKMIGPLFPGLRDDEENFQKDLVLLWKRRSLLSQMYKVGSGQNDEYKTSSQEAVDPTQLELDDVRASFDRSRSISHPLPEEDGHTQCIKRKGFRGYVWNGIKQILGRSNTMNASPLVAKKHTSNGEIRQARLQEFLRSSDTVRLMLKASTVKLSSYRAWPNMHDSRFALYKLPLRVPKDDQEYAGLWGGTFGWPPGKPSEDKPGKALFFLLLSYEEFQGQQLLIATKILEGTHYVLHPNGSAMFTANINDPSSEPFPWDTDADSVPVNIKQAFVGEGIASGYGFRYPGSKPGSLFVLENGILAFIWKESRAVLNLQRLNLQELLKKGERVPSLPPVTNFSYLTKSYSNVFAGFPSSSNFLSSPSKRCQRCKAMAKPRRSKMMSLKLPFLLTLFLALSQAQPHSDDPPPPPSSNVCVIGAGIGGSSVAHFLRKYSPSSTPSTKIRVFERNGRVGGRIATVTVAGETFEAGASILHPKNLHTVDYVKILKLKVKEPTASEDSLSLGIWDGNKFVFKTVSPLSSTVPLIDKLLKLPFVNTLVSFVNSALMFVRYGFSLFKMQNFVEIAVDKFVKYYEDPGSRPIFETVDEMLQWAGLYNLTTRTLRDELVDAGLSTSLINELVTVITRINYGQSVSMSGLGGVVSLAGSGGGLWSIEGGNWQMAAGLINQSDVALHLHEEIKSVADLGDYYELNSTKGNSYRCEVAVVATPLDELDIQFIPPISIPERKLQHTFTTFVRGLLNPAYFGLKAVTKIPDLVGTIEDPELPFSCIAVLKKHNEKESTYKLFSRQPMADTLLDSIFSVRKETIRINWAAYPHYHAPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENIARLILSRYFGQVIVHSSNLSASSQGEGTHLDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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