Glyma.06g149900

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Report for Sequence Feature Glyma.06g149900

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12238755
stop:	12241334
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.06g149900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76880.1	AT	Duplicated homeodomain-like superfamily protein	JGI	N/A	IEA
KOG4282	KOG	Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain	JGI	N/A	IEA
PF10545	PFAM	Alcohol dehydrogenase transcription factor Myb/SANT-like	JGI	N/A	IEA

Expression Patterns of Glyma.06g149900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.06g149900

Paralog	Evidence	Comments
Glyma.04g216100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g149900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma06g15500	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.06g149900

Limit To All Plant Sequences

>Glyma.06g149900.2 sequence-type=transcript locus=Glyma.06g149900 ID=Glyma.06g149900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAGTTTAAAATATATATTATAATCCCCCCCTTATTATTATTATTCACCTTTCAAATTTCAAGATGCTCTCTCTCTCCCCCTTGTTTTAAACTTGTAAATAATGGTATGGTAGAAGTAGTAGTAGCCCTTCAAATTTCAAACTGAAATAGCACAAACAATACCAACTCTCCTCATACCAAAACACACAACTCCAGTTATTGAAATTGAAATTACCCTTTTCCTTTTTTCCCCCAAATTTCACCCGAGGCTGtttttttttcttttttttttttctctcttttGACCTTACCCTTTGAGAGTTTCGTGGCTGTAATTTCGTTGTAACCGATGCTGGAAATCTCAACTTTACCGGAAACCGCGACGGAGAACGCGGACGGCGGTTCCGCGGCGGTATCCGACGGGTCGAAAGCGGAGCACAGCGAAGACGGTGACCGGAATTCCGCCGCGAACCGGTGGCCGAGAGAGGAGACAATGGCTTTGCTCAAGATAAGGTCTGAAATGGACGTTGCTTTCAAAGACGCAAACCCCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAGTTAGCAGAGCTAGGATATAATAGAAGTGCTAAGAAGTGCAAGGAGAAATTCGAGAACGTTTACAAGTACCATAGGAGAACCAAAGAAGGTCGTTTTGGAAAATCAAACGGTGCAAAAACTTATCGATTTTTCGAGCAGTTGGAAGCCTTAGACGGAAACCACTCACTTCCTCCTCCGACAACAACAACCGacaacaacaacaacgttgatgatgatgatgttATCCTCAACGCGGTTCCGTGTTCCGTTATAGCTGCGGCGGCGCACGAGCATTCGAGTTCGACGACGTCGTCTTCGGGGAAGATGAAGAGAAAGCTGACGCGGTTTCTGGAGGGGCTGATGAGGGAAGTGATAGAGAAGCAAGAGACGCTGCAGAGAAAGTTCATGGAAGTGTTGGATAAGTGTGAAAAAGATCGAATGGCGAGGGAGGAAGCGTGGAAGAAGGAGGAGCTCGAGAGGATCAAGAAAGAACGCGAGCTTCTCGCTCATGAAAGATCAATTGCTGCCGCCAAAGATGAAGCTGTTCTTGCTTTTCTTAAAAAGTTCGCAGAAGCAGAAGGCACGGTGCAGTTGCTCGAGAAAATTCAGGTTCAGAACGACAAACAGAAAAACAAGCATCAAAATGGTGCTAATGCTAATAGAGGTGGTGATGTCACGGTTGTCACTGATATGGATAAACAAGAATGTGGAAATAATGGTGTTAGTGTTGGGAATTTTGTGCACATGAGTAGTTCGCGGTGGCCGAAGGATGAAGTGGAGGCTTTGATAAGGTTAAGGACTGAGTTTGATGTGCAGGCACAAGGGaataataataatagtaataatGGGTCTAAAGGGCCTCTTTGGGAGGAGATATCTTTGGCTATGAAGAGCATTGGTTATGATCGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATAAAGGAGAAGAACAAGAGGAAACCTCAGGATTCCAAGACGTGTCCTTATTATCACCACCTTGAGGCTTTGTACAGTAAGAAGCCTAAGAAGGTGGTGGATCATGGGAACGAGTTGAAGCCTGAGGAGCTGTTAATGCATATCATGGAAAGtcaaagtcaggaacagcagcaagagatgcagactcagactcagtcatcatctgaagatgctgagagagatcaggatcagaatcaggatcaaagtgggtatcagaatcagaTGGTTGataataataataataataataGTCCTTCTTCCATTGCAATTATGAGTTAAAAAGCTTCGTTTCAAGAGATTCTTTCTTTAATATGCTAAAATTGAACATCTTCTCTGATGACAAGCAACGTGGGGGTTCCTTTGACTTTACAATCATTTATCAAACTTGTTGGATTGGAGGGGGTTATGAATCTTATGATGGGTCGGAGTCATCAACAACAGCAAGAGTAGATTTCAATATTTTATTTTGTTGCTGGGTTTAGCGAACATGGTAGATGATACAAGGAACACGCGCACagagaaagagagagagagagagaTTTGCCCCTCTGTAAAAAACAAAGTCACTGGGCGTGTTATTTTAATTTGATATTTTAAATTTTTCCCTAGAAGTTTGTAAACCCATGTGTGATCAGGTGGGAAATGGTTGGATTTGTATGCTTGTGACAATAAAGGATAGCATAGTGGCGAACAGTGAACTGCAATGATAATGAAAGTGCATGTTTGTTTTGAGTTATAATAATATTTTTACAATAAAT

Coding sequences of Glyma.06g149900

Limit To All Plant Sequences

>Glyma.06g149900.1 sequence-type=CDS polypeptide=Glyma.06g149900.1.p locus=Glyma.06g149900 ID=Glyma.06g149900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGGAAATCTCAACTTTACCGGAAACCGCGACGGAGAACGCGGACGGCGGTTCCGCGGCGGTATCCGACGGGTCGAAAGCGGAGCACAGCGAAGACGGTGACCGGAATTCCGCCGCGAACCGGTGGCCGAGAGAGGAGACAATGGCTTTGCTCAAGATAAGGTCTGAAATGGACGTTGCTTTCAAAGACGCAAACCCCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAGTTAGCAGAGCTAGGATATAATAGAAGTGCTAAGAAGTGCAAGGAGAAATTCGAGAACGTTTACAAGTACCATAGGAGAACCAAAGAAGGTCGTTTTGGAAAATCAAACGGTGCAAAAACTTATCGATTTTTCGAGCAGTTGGAAGCCTTAGACGGAAACCACTCACTTCCTCCTCCGACAACAACAACCGACAACAACAACAACGTTGATGATGATGATGTTATCCTCAACGCGGTTCCGTGTTCCGTTATAGCTGCGGCGGCGCACGAGCATTCGAGTTCGACGACGTCGTCTTCGGGGAAGATGAAGAGAAAGCTGACGCGGTTTCTGGAGGGGCTGATGAGGGAAGTGATAGAGAAGCAAGAGACGCTGCAGAGAAAGTTCATGGAAGTGTTGGATAAGTGTGAAAAAGATCGAATGGCGAGGGAGGAAGCGTGGAAGAAGGAGGAGCTCGAGAGGATCAAGAAAGAACGCGAGCTTCTCGCTCATGAAAGATCAATTGCTGCCGCCAAAGATGAAGCTGTTCTTGCTTTTCTTAAAAAGTTCGCAGAAGCAGAAGGCACGGTGCAGTTGCTCGAGAAAATTCAGGTTCAGAACGACAAACAGAAAAACAAGCATCAAAATGGTGCTAATGCTAATAGAGGTGGTGATGTCACGGTTGTCACTGATATGGATAAACAAGAATGTGGAAATAATGGTGTTAGTGTTGGGAATTTTGTGCACATGAGTAGTTCGCGGTGGCCGAAGGATGAAGTGGAGGCTTTGATAAGGTTAAGGACTGAGTTTGATGTGCAGGCACAAGGGAATAATAATAATAGTAATAATGGGTCTAAAGGGCCTCTTTGGGAGGAGATATCTTTGGCTATGAAGAGCATTGGTTATGATCGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATAAAGGAGAAGAACAAGAGGAAACCTCAGGATTCCAAGACGTGTCCTTATTATCACCACCTTGAGGCTTTGTACAGTAAGAAGCCTAAGAAGGTGGTGGATCATGGGAACGAGTTGAAGCCTGAGGAGCTGTTAATGCATATCATGGAAAGTCAAAGTCAGGAACAGCAGCAAGAGATGCAGACTCAGACTCAGTCATCATCTGAAGATGCTGAGAGAGATCAGGATCAGAATCAGGATCAAAGTGGGTATCAGAATCAGATGGTTGATAATAATAATAATAATAATAGTCCTTCTTCCATTGCAATTATGAGTTAA

>Glyma.06g149900.2 sequence-type=CDS polypeptide=Glyma.06g149900.2.p locus=Glyma.06g149900 ID=Glyma.06g149900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGGAAATCTCAACTTTACCGGAAACCGCGACGGAGAACGCGGACGGCGGTTCCGCGGCGGTATCCGACGGGTCGAAAGCGGAGCACAGCGAAGACGGTGACCGGAATTCCGCCGCGAACCGGTGGCCGAGAGAGGAGACAATGGCTTTGCTCAAGATAAGGTCTGAAATGGACGTTGCTTTCAAAGACGCAAACCCCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAGTTAGCAGAGCTAGGATATAATAGAAGTGCTAAGAAGTGCAAGGAGAAATTCGAGAACGTTTACAAGTACCATAGGAGAACCAAAGAAGGTCGTTTTGGAAAATCAAACGGTGCAAAAACTTATCGATTTTTCGAGCAGTTGGAAGCCTTAGACGGAAACCACTCACTTCCTCCTCCGACAACAACAACCGACAACAACAACAACGTTGATGATGATGATGTTATCCTCAACGCGGTTCCGTGTTCCGTTATAGCTGCGGCGGCGCACGAGCATTCGAGTTCGACGACGTCGTCTTCGGGGAAGATGAAGAGAAAGCTGACGCGGTTTCTGGAGGGGCTGATGAGGGAAGTGATAGAGAAGCAAGAGACGCTGCAGAGAAAGTTCATGGAAGTGTTGGATAAGTGTGAAAAAGATCGAATGGCGAGGGAGGAAGCGTGGAAGAAGGAGGAGCTCGAGAGGATCAAGAAAGAACGCGAGCTTCTCGCTCATGAAAGATCAATTGCTGCCGCCAAAGATGAAGCTGTTCTTGCTTTTCTTAAAAAGTTCGCAGAAGCAGAAGGCACGGTGCAGTTGCTCGAGAAAATTCAGGTTCAGAACGACAAACAGAAAAACAAGCATCAAAATGGTGCTAATGCTAATAGAGGTGGTGATGTCACGGTTGTCACTGATATGGATAAACAAGAATGTGGAAATAATGGTGTTAGTGTTGGGAATTTTGTGCACATGAGTAGTTCGCGGTGGCCGAAGGATGAAGTGGAGGCTTTGATAAGGTTAAGGACTGAGTTTGATGTGCAGGCACAAGGGAATAATAATAATAGTAATAATGGGTCTAAAGGGCCTCTTTGGGAGGAGATATCTTTGGCTATGAAGAGCATTGGTTATGATCGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATAAAGGAGAAGAACAAGAGGAAACCTCAGGATTCCAAGACGTGTCCTTATTATCACCACCTTGAGGCTTTGTACAGTAAGAAGCCTAAGAAGGTGGTGGATCATGGGAACGAGTTGAAGCCTGAGGAGCTGTTAATGCATATCATGGAAAGTCAAAGTCAGGAACAGCAGCAAGAGATGCAGACTCAGACTCAGTCATCATCTGAAGATGCTGAGAGAGATCAGGATCAGAATCAGGATCAAAGTGGGTATCAGAATCAGATGGTTGATAATAATAATAATAATAATAGTCCTTCTTCCATTGCAATTATGAGTTAA

Predicted protein sequences of Glyma.06g149900

Limit To All Plant Sequences

>Glyma.06g149900.1.p sequence-type=predicted peptide transcript=Glyma.06g149900.1 locus=Glyma.06g149900 ID=Glyma.06g149900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLEISTLPETATENADGGSAAVSDGSKAEHSEDGDRNSAANRWPREETMALLKIRSEMDVAFKDANPKAPLWEQVSRKLAELGYNRSAKKCKEKFENVYKYHRRTKEGRFGKSNGAKTYRFFEQLEALDGNHSLPPPTTTTDNNNNVDDDDVILNAVPCSVIAAAAHEHSSSTTSSSGKMKRKLTRFLEGLMREVIEKQETLQRKFMEVLDKCEKDRMAREEAWKKEELERIKKERELLAHERSIAAAKDEAVLAFLKKFAEAEGTVQLLEKIQVQNDKQKNKHQNGANANRGGDVTVVTDMDKQECGNNGVSVGNFVHMSSSRWPKDEVEALIRLRTEFDVQAQGNNNNSNNGSKGPLWEEISLAMKSIGYDRSAKRCKEKWENINKYFKRIKEKNKRKPQDSKTCPYYHHLEALYSKKPKKVVDHGNELKPEELLMHIMESQSQEQQQEMQTQTQSSSEDAERDQDQNQDQSGYQNQMVDNNNNNNSPSSIAIMS*

>Glyma.06g149900.2.p sequence-type=predicted peptide transcript=Glyma.06g149900.2 locus=Glyma.06g149900 ID=Glyma.06g149900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLEISTLPETATENADGGSAAVSDGSKAEHSEDGDRNSAANRWPREETMALLKIRSEMDVAFKDANPKAPLWEQVSRKLAELGYNRSAKKCKEKFENVYKYHRRTKEGRFGKSNGAKTYRFFEQLEALDGNHSLPPPTTTTDNNNNVDDDDVILNAVPCSVIAAAAHEHSSSTTSSSGKMKRKLTRFLEGLMREVIEKQETLQRKFMEVLDKCEKDRMAREEAWKKEELERIKKERELLAHERSIAAAKDEAVLAFLKKFAEAEGTVQLLEKIQVQNDKQKNKHQNGANANRGGDVTVVTDMDKQECGNNGVSVGNFVHMSSSRWPKDEVEALIRLRTEFDVQAQGNNNNSNNGSKGPLWEEISLAMKSIGYDRSAKRCKEKWENINKYFKRIKEKNKRKPQDSKTCPYYHHLEALYSKKPKKVVDHGNELKPEELLMHIMESQSQEQQQEMQTQTQSSSEDAERDQDQNQDQSGYQNQMVDNNNNNNSPSSIAIMS*

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