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Report for Sequence Feature Glyma.06g147000

Feature Type:gene_model
Chromosome:Gm06
Start:11982014
stop:11985343
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g147000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G64830.2AT programmed cell death 2 C-terminal domain-containing protein JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
PTHR12298Panther PCDC2 (PROGRAMMED CELL DEATH PROTEIN 2)-RELATED JGI N/AIEA
PTHR12298:SF3Panther JGI N/AIEA
PF04194PFAM Programmed cell death protein 2, C-terminal putative domain JGI N/AIEA

Expression Patterns of Glyma.06g147000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g147000 not represented in the dataset
Glyma.06g147000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g147000
ParalogEvidenceComments
Glyma.04g218800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g147000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g15211 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g147000
>Glyma.06g147000.1 sequence-type=CDS polypeptide=Glyma.06g147000.1.p locus=Glyma.06g147000 ID=Glyma.06g147000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACACCTCTCGGCAAAAACAACCCGCATCGGTTGGTGAACTTCCAATTGCCACCGTGTCGGACGATGACGACGACGGAAGCGACATGGATCTCGAACAACTCGGTAAGGCACTCTTTGAAGCTGGGACCCTGGCTTCCAACACTAAGTGCAAGAAACCGCGAAAAAAATGCCAGAACAAGCTCCCTTCGTCTTCTCCAAATCCAAAAACAACAACCATGGTTCAAAATGATGTGCCTGTGGTGCCATGCTTTTATATATATGCACAGGAAGAGCAGTCTTCGGGGGATCTTAGTTCTGTATGTTCTAGCTACTCCTCCCTTTCTATTAAGGGGAATGGAAGTGACGTTGACAATGCTGATCCTTCACAAGCTGAAGAAACCTTGGAAAAGGAACAATATGAATACGATAAAGCTTTGAATGCTGATAGAACGTACCTCAAGTTCAAGAAACGATTGGATGCGTATCCCGAGCAATGTTATAGATATTCATATGGTGGGAGGCCAATTTTAGCTGCAGCTGACAAAATGAACCCCGGCAGCTGCGATCTCTGTGGCAGACCGAGGCAATTTGAGATGCAACTGATGCTTCCATTACTATACTTTCTTCAGGAAGCACTTGGTGACCAAAGAAAGATTGTGGGAAAGTGGGATTGGATGACCCTTATTATATATACTTGTTCAGAGAGTTGCTGTGAAGGGATTGAACAAGCAAAGTCCAATAATAAGGCTCCATTTGTTGAGAATTTCCACAACATTTTGTCTTCATCAATAGGATTAAGAAGTGGAATTGAAAAAATTGCAGCAGAATCAACATTATTAAAGAGGGAGGTTATTTGA
Predicted protein sequences of Glyma.06g147000
>Glyma.06g147000.1.p sequence-type=predicted peptide transcript=Glyma.06g147000.1 locus=Glyma.06g147000 ID=Glyma.06g147000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDTSRQKQPASVGELPIATVSDDDDDGSDMDLEQLGKALFEAGTLASNTKCKKPRKKCQNKLPSSSPNPKTTTMVQNDVPVVPCFYIYAQEEQSSGDLSSVCSSYSSLSIKGNGSDVDNADPSQAEETLEKEQYEYDKALNADRTYLKFKKRLDAYPEQCYRYSYGGRPILAAADKMNPGSCDLCGRPRQFEMQLMLPLLYFLQEALGDQRKIVGKWDWMTLIIYTCSESCCEGIEQAKSNNKAPFVENFHNILSSSIGLRSGIEKIAAESTLLKREVI*






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