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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G53350.1 | AT | CLP protease regulatory subunit X | JGI | N/A | IEA |
| GO:0006457 | GO-bp | protein folding | EnsemblGenomes | N/A | IEA |
| GO:0006508 | GO-bp | proteolysis | EnsemblGenomes | N/A | IEA |
| GO:0030163 | GO-bp | protein catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005759 | GO-cc | mitochondrial matrix | EnsemblGenomes | N/A | IEA |
| GO:0004176 | GO-mf | ATP-dependent peptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0016887 | GO-mf | ATPase activity | JGI | N/A | IEA |
| GO:0051082 | GO-mf | unfolded protein binding | EnsemblGenomes | N/A | IEA |
| KOG0745 | KOG | Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) | JGI | N/A | IEA |
| PTHR11262 | Panther | HSL AND CLP PROTEASE | JGI | N/A | IEA |
| PF07724 | PFAM | AAA domain (Cdc48 subfamily) | JGI | N/A | IEA |
| PF10431 | PFAM | C-terminal, D2-small domain, of ClpB protein | JGI | N/A | IEA |
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Glyma.06g129100 not represented in the dataset |
Glyma.06g129100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.04g235600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma06g13450 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g129100.1 sequence-type=CDS polypeptide=Glyma.06g129100.1.p locus=Glyma.06g129100 ID=Glyma.06g129100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCTTGCGTTTCGATCGAAGCCTTGTTGCAGTTACAAGGAAACAGCGTCCCTCGCACTTGCACACTTCAGGCACTTGGTGTTCAACTACGCACGCGCCGGGAGCTCTCGGTGCCCTCCACGCGCCGGCTTCGGGGTTCGGAGAGGCTACATCGTCGTTGCCTCGTTGGGGGACCCACCCGAAGTCTGGTCCGGCGGCGGGATTGTCGTTCGCCCCGGGAATTCCAATTTCGAAGTCGCCGGCGGCGGTGGCGCCCCGAACTCCGGCGATTCAAAAGAGGGGTGCTGGGGTGGCTCCAATTTGGGGAACAGTTTCCCAACGCCAAAGGAAATTTGCAAGGGGCTCGACAAATTCGTTATTGGACAAGAGAGGGCCAAGAAGGTGCTTTCTGTAGCGGTTTATAATCACTATAAGAGGATATTTAATGAAACCTCTTTGCCCAAGTGGCCTGCAGGAGATTCAGATAATAGTGTGAAAGTTGATGCTGCTGATGATGATAGAGTTGAACTTGAGAAAAGCAACATCCTTCTAATGGGGCCAACCGGATCAGGGAAGACATTACTTGCCAAAACTTTGGCTCGATTTGTAAATGTTCCCTTTGTTATTGCAGATGCAACTTCACTCACTCAGGCAGGTTATGTTGGAGAGGATGTGGAATCCATATTATACAAGCTCCTCATGGTTGCAGATTATAATGTTGCAGCTGCACAGCAAGGCATTGTTTACATTGATGAAGTTGACAAGATTACTAAAAAGGCTGAGAGCCTTAATATCAGTAGAGATGTTTCTGGTGAAGGTGTTCAGCAGGCATTACTAAAGATGCTTGAGGGGACGGTTGTCAATGTTCCTGAGAAGGGAGCCCGAAAGCATCCTAGAGGTGACAATATTCAGATTGACACAAAGAATATACTTTTCATTTGTGGAGGAGCCTTTGTTGACTTAGAGAAAACAATCTCAGAAAGGCGTCATGATTCTTCTATTGGATTTGGGGCTCCTATACGTGCAAACATGAGGACTGGTAAAGTCACAGAAGCTGCTGTGGCATCATCATTATTGGAAACTGTTGAAAGTAGTGATCTTATTGCATATGGTTTAATACCTGAATTTGTTGGGAGGTTTCCTATCCTTGTCAGTTTGTCAGCTTTAACTGAAAATCAACTAATTCAGGTCCTCTCAGAACCAAAGAATGCTCTAGGGAAGCAATACAAGAAGATGTTCCAAATGAATGGGGTAAAGCTACATTTTACAGAAAATGCTCTAAGATCAATTGCCAGAAAGGCAATATCTAAAAATACTGGTGCTCGGGGATTACGATCGATACTAGAAAATGTGTTGGTAGATGCCATGTATGAGATTCCTGATATTAGAACAGACGATGATGTTATAGATGCTGTTGTCGTTGATGAAGAGGCCGTTGGAGGTGAGGGGCGTGGGAGAGGGGCTAAAATCCTGTATGGTAAGGGTGCATTGGATCAATATCTTTCAGAGCAGAAAAATGATTCAGAGACCATGGAGGCATCAGCTGCAGATAATGAAGCCGATACAGAACTTCCTTCCATTGTTGCCAGCATGTAA
>Glyma.06g129100.1.p sequence-type=predicted peptide transcript=Glyma.06g129100.1 locus=Glyma.06g129100 ID=Glyma.06g129100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLAFRSKPCCSYKETASLALAHFRHLVFNYARAGSSRCPPRAGFGVRRGYIVVASLGDPPEVWSGGGIVVRPGNSNFEVAGGGGAPNSGDSKEGCWGGSNLGNSFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIFNETSLPKWPAGDSDNSVKVDAADDDRVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATSLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKNILFICGGAFVDLEKTISERRHDSSIGFGAPIRANMRTGKVTEAAVASSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLIQVLSEPKNALGKQYKKMFQMNGVKLHFTENALRSIARKAISKNTGARGLRSILENVLVDAMYEIPDIRTDDDVIDAVVVDEEAVGGEGRGRGAKILYGKGALDQYLSEQKNDSETMEASAADNEADTELPSIVASM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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