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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G44800.1 | AT | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | JGI | N/A | IEA |
| AT4G10500.1 | AT | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0016706 | GO-mf | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG0143 | KOG | Iron/ascorbate family oxidoreductases | JGI | N/A | IEA |
| PTHR10209 | Panther | OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEIN | JGI | N/A | IEA |
| PTHR10209:SF55 | Panther | JGI | N/A | IEA | |
| PF03171 | PFAM | 2OG-Fe(II) oxygenase superfamily | JGI | N/A | IEA |
| PWY-6787 | SoyCyc9 | flavonoid biosynthesis (in equisetum) | Plant Metabolic Network | ISS | |
| PWY1F-FLAVSYN | SoyCyc9 | flavonoid biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-42370 | SoyCyc9-rxn | flavanone 3-dioxygenase | Plant Metabolic Network | ISS |
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Glyma.06g128100 not represented in the dataset |
Glyma.06g128100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma06g13370 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g128100.2 sequence-type=transcript locus=Glyma.06g128100 ID=Glyma.06g128100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 AAAGCCTACGTGCAAAAATTAAGGTCAACAATTGTGGTTTCTATCCAATAATTTGTGACATTGTACACAAACAATATCCATGGCCTCTGCAGCTTCCATTTCCTCATCACAACCAGAAGCACCAAAGGTTCATGCATCTGATATTTCTAGCATCAAAGCCTTTGCAGAATCAAAGGGAGCCTCTCTGATCCCTTACACCTACCACTCCATCACAGAGCACCATGATGATGATGTAGCAGATGAGCTTGCTGCTTCCATCCCAGTCATCGACTTGTCTCTCCTCACTTCGCATGACCCTCAAATCCACGCCAAAGCCGTGCACCAACTCGGCAAGGCCTGTGCAGAGTGGAGTTTCTTCATGCTCACAAATCATGGAATTCCCGAGAGCCTGGTGGAGGAGTTGATGAAAAAGTCTCGCGAGTTTCATGATTTGCCGATGGAAGAAAAGAAGGAGTTTGGTAATAAAGGACCCTTTGAACCGATCAGGCATGGCACCAGCTTCTGTCCAGAAGCAGAGAATGTTCATTATTGGAGAGATTATCTCAAGGCCATCACGTTTCCTGAATTCAACTTCCCCTACAAGCCACCAGGTTACAGGGAAGTTGCTTATGATTACAGCAAAAAAATCAGAGGTGTGACAAGGAAGTTGCTTGAAGGAATATCAGAGAGTTTGGGATTAGAATCCAATTCCATAATCGAGTCCACTGATTTTGACTCTGGCCATCAGCTGTTTGTTGTGAACCTGTATCCACCATGTCCACAACCGCACCTTGCTCTGGGGCTGCCTTCTCATTCTGACGTAGGTTTATTGACCTTGCTCACGCAGAATGGAATTGGAGGGCTTCAGGTTAAGCACAATGGCAAATGGGTCAATGTCAATCCCCTTCCCAACTGCCTAATTGTTTTGCTTTCAGATCAACTCGAGGTCACTCACTCATTCCCACTTTTGCTCTTTCATTTGTTGCATTACTAATTAACCTTGGTTTGATATCTAATGCTATTATGCAACCCATTCTAACATAGGTTGTGAGTAATGGGAAGTACGCTAGGGTGATGCACCGAGCAATACTCAACAATGCAGACACTAGGATCAGTGTTGTGCTGGCGAATGGACCTGCGCTAGATAAGGAAATTGGACCTTTGCCGGAGCTACTGCAGAATTATAAGCCATTGTTCAGAAGCATTAAATACCGAGATTACTTCCAAATTCAGCAGAAGTCACGATTACAAGATAAAAGTAGCTTGGATGAGATTCGCCTTAACTAATGCTCAACAATGATATGATACTCATATATATCTATCTGTGCTGTTGCTTAATTTGAACAACACGGGATGGAAAGTTGGTATGTATTGAGTGATGATAAATTGATAATGTTCCTGGATTAGGCGTGTGTTCATTGATATGAGATATGATTACATTTCATTCTGGTGATTGATCGTGTTTCTGAATTCAAAATGGCAAAAGACGAGCGATTAATAATATTTCATACCAAACTTTTCGAACTAATGTGTGAAGGATTA
>Glyma.06g128100.1 sequence-type=CDS polypeptide=Glyma.06g128100.1.p locus=Glyma.06g128100 ID=Glyma.06g128100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCTCTGCAGCTTCCATTTCCTCATCACAACCAGAAGCACCAAAGGTTCATGCATCTGATATTTCTAGCATCAAAGCCTTTGCAGAATCAAAGGGAGCCTCTCTGATCCCTTACACCTACCACTCCATCACAGAGCACCATGATGATGATGTAGCAGATGAGCTTGCTGCTTCCATCCCAGTCATCGACTTGTCTCTCCTCACTTCGCATGACCCTCAAATCCACGCCAAAGCCGTGCACCAACTCGGCAAGGCCTGTGCAGAGTGGAGTTTCTTCATGCTCACAAATCATGGAATTCCCGAGAGCCTGGTGGAGGAGTTGATGAAAAAGTCTCGCGAGTTTCATGATTTGCCGATGGAAGAAAAGAAGGAGTTTGGTAATAAAGGACCCTTTGAACCGATCAGGCATGGCACCAGCTTCTGTCCAGAAGCAGAGAATGTTCATTATTGGAGAGATTATCTCAAGGCCATCACGTTTCCTGAATTCAACTTCCCCTACAAGCCACCAGGTTACAGGGAAGTTGCTTATGATTACAGCAAAAAAATCAGAGGTGTGACAAGGAAGTTGCTTGAAGGAATATCAGAGAGTTTGGGATTAGAATCCAATTCCATAATCGAGTCCACTGATTTTGACTCTGGCCATCAGCTGTTTGTTGTGAACCTGTATCCACCATGTCCACAACCGCACCTTGCTCTGGGGCTGCCTTCTCATTCTGACGTAGGTTTATTGACCTTGCTCACGCAGAATGGAATTGGAGGGCTTCAGGTTAAGCACAATGGCAAATGGGTCAATGTCAATCCCCTTCCCAACTGCCTAATTGTTTTGCTTTCAGATCAACTCGAGGTTGTGAGTAATGGGAAGTACGCTAGGGTGATGCACCGAGCAATACTCAACAATGCAGACACTAGGATCAGTGTTGTGCTGGCGAATGGACCTGCGCTAGATAAGGAAATTGGACCTTTGCCGGAGCTACTGCAGAATTATAAGCCATTGTTCAGAAGCATTAAATACCGAGATTACTTCCAAATTCAGCAGAAGTCACGATTACAAGATAAAAGTAGCTTGGATGAGATTCGCCTTAACTAA >Glyma.06g128100.2 sequence-type=CDS polypeptide=Glyma.06g128100.2.p locus=Glyma.06g128100 ID=Glyma.06g128100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCTCTGCAGCTTCCATTTCCTCATCACAACCAGAAGCACCAAAGGTTCATGCATCTGATATTTCTAGCATCAAAGCCTTTGCAGAATCAAAGGGAGCCTCTCTGATCCCTTACACCTACCACTCCATCACAGAGCACCATGATGATGATGTAGCAGATGAGCTTGCTGCTTCCATCCCAGTCATCGACTTGTCTCTCCTCACTTCGCATGACCCTCAAATCCACGCCAAAGCCGTGCACCAACTCGGCAAGGCCTGTGCAGAGTGGAGTTTCTTCATGCTCACAAATCATGGAATTCCCGAGAGCCTGGTGGAGGAGTTGATGAAAAAGTCTCGCGAGTTTCATGATTTGCCGATGGAAGAAAAGAAGGAGTTTGGTAATAAAGGACCCTTTGAACCGATCAGGCATGGCACCAGCTTCTGTCCAGAAGCAGAGAATGTTCATTATTGGAGAGATTATCTCAAGGCCATCACGTTTCCTGAATTCAACTTCCCCTACAAGCCACCAGGTTACAGGGAAGTTGCTTATGATTACAGCAAAAAAATCAGAGGTGTGACAAGGAAGTTGCTTGAAGGAATATCAGAGAGTTTGGGATTAGAATCCAATTCCATAATCGAGTCCACTGATTTTGACTCTGGCCATCAGCTGTTTGTTGTGAACCTGTATCCACCATGTCCACAACCGCACCTTGCTCTGGGGCTGCCTTCTCATTCTGACGTAGGTTTATTGACCTTGCTCACGCAGAATGGAATTGGAGGGCTTCAGGTTAAGCACAATGGCAAATGGGTCAATGTCAATCCCCTTCCCAACTGCCTAATTGTTTTGCTTTCAGATCAACTCGAGGTCACTCACTCATTCCCACTTTTGCTCTTTCATTTGTTGCATTACTAA
>Glyma.06g128100.1.p sequence-type=predicted peptide transcript=Glyma.06g128100.1 locus=Glyma.06g128100 ID=Glyma.06g128100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASAASISSSQPEAPKVHASDISSIKAFAESKGASLIPYTYHSITEHHDDDVADELAASIPVIDLSLLTSHDPQIHAKAVHQLGKACAEWSFFMLTNHGIPESLVEELMKKSREFHDLPMEEKKEFGNKGPFEPIRHGTSFCPEAENVHYWRDYLKAITFPEFNFPYKPPGYREVAYDYSKKIRGVTRKLLEGISESLGLESNSIIESTDFDSGHQLFVVNLYPPCPQPHLALGLPSHSDVGLLTLLTQNGIGGLQVKHNGKWVNVNPLPNCLIVLLSDQLEVVSNGKYARVMHRAILNNADTRISVVLANGPALDKEIGPLPELLQNYKPLFRSIKYRDYFQIQQKSRLQDKSSLDEIRLN* >Glyma.06g128100.2.p sequence-type=predicted peptide transcript=Glyma.06g128100.2 locus=Glyma.06g128100 ID=Glyma.06g128100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASAASISSSQPEAPKVHASDISSIKAFAESKGASLIPYTYHSITEHHDDDVADELAASIPVIDLSLLTSHDPQIHAKAVHQLGKACAEWSFFMLTNHGIPESLVEELMKKSREFHDLPMEEKKEFGNKGPFEPIRHGTSFCPEAENVHYWRDYLKAITFPEFNFPYKPPGYREVAYDYSKKIRGVTRKLLEGISESLGLESNSIIESTDFDSGHQLFVVNLYPPCPQPHLALGLPSHSDVGLLTLLTQNGIGGLQVKHNGKWVNVNPLPNCLIVLLSDQLEVTHSFPLLLFHLLHY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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