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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G06160.1 | AT | splicing factor-related | JGI | N/A | IEA |
| GO:0000398 | GO-bp | mRNA splicing, via spliceosome | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005681 | GO-cc | spliceosomal complex | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
| KOG2636 | KOG | Splicing factor 3a, subunit 3 | JGI | N/A | IEA |
| PTHR12786 | Panther | SPLICING FACTOR SF3A-RELATED | JGI | N/A | IEA |
| PTHR12786:SF2 | Panther | SPLICING FACTOR 3A SUBUNIT 3 | JGI | N/A | IEA |
| PF11931 | PFAM | Domain of unknown function (DUF3449) | JGI | N/A | IEA |
| PF12108 | PFAM | Splicing factor SF3a60 binding domain | JGI | N/A | IEA |
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Glyma.06g127500 not represented in the dataset |
Glyma.06g127500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.04g236800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma06g13290 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g127500.1 sequence-type=CDS polypeptide=Glyma.06g127500.1.p locus=Glyma.06g127500 ID=Glyma.06g127500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCGTCGACGGTGCTGGAGGTGACGCGGGCGGCACACGAGGAAGTGGAGCGGTTGGAGCGGCTGATAGTGAAGGAGCTCCAGAATGACCCTGCCTCCAACAAAGAGCGCTTGTATCAGAGTCACCGTGTGCGAAACATGATCGACACCATTACTTCCACCACTGAAAAGCTTATTGGGGTATATGAAGATAACGACAATGCAAGGAAGGACGAGATTGCTGCACTCGGAGGCCAAACCGCCACTGGAATTAACGTTTTTAGCGCCTTTTATGATAGACTTAAAGAGATACGAGAGTATCATAGGAAGCACCCAGTTGCTCGTGTTGTTGACGCCAATGACGATTATGAAACACTTCTCAATGAGGAACCTCAAATTGAGTTTAGTGGAGAGGAATCACTTGGTCGATACCTAGACTTGCATGAATTATATTATCAGTATGTCAATTCTAAGTTTGGAGAGCCAATTGAGTATTCTGCATACCTTGATGTTTTCTCAGACACAGATAAGATTCCCCGCAAAATGAAAATGACCAGGCAGTACCGAGAATATTTGGCGAATCTTTTGGAGTATCTGTTATACTTTTTCCAGCGGACAGAACCCCTGCAAGATCTTGATCGAATTTTGTCAAAGGTAACAACTGAATTTGAAGAAAGTTGGGTTGTTGGAAAGGTACAGCGATGGGAAAATGACAATCAGGAAAATGGACATGTACTTGCTGAGCATGCTCCCATTGATCTTGATTATTATAGTACAATTGAAGAATTGATGGAAGTCGGCCCTGAAAGGTTAAAGGAGGCACTGGCTGCATTGGGGCTTAAGACTGGTGGTACTGTTCAGCAACGCGCAGAGAGGCTCTTCCTCACAAAGCACACACCTCTTGAAAAGTTGGACAGGAAGCATTTTGCTAAGGGTGCATGTGGTGTAGAAAAGAATGGGGTTGCTGCAGTTCCACAAGAAGATGGAAATTCTAAAGAAATTGCATTGATGGAAGCCAAAATGACAAAACTTTGTCATTTGTTAGAGGAGACAATTGCTCGAACAAAAGACAATGTTGTAAAGAAGCAAGCCCTAACATATGAGGAAATGGAAGCAGAACGTGAGGAGGAAGAGACACAAGAGGACTCTGAAAGCGAAGATGAGGAGCAGCAGATATATAATCCCCTAAAATTACCAATGGGATGGGATGGGAAGCCTATACCTTACTGGCTGTATAAGCTACATGGTCTGGGTCAGGAATTTAAGTGTGAGATATGCGGGAACTACAGTTATTGGGGGCGTCGGGCTTTCGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGTCTTGGTATACCAAATACTAAGAATTTCAACGAAATCACATCAATTGAGGAAGCAAAGGAACTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAGTGGCGCCCAGATCTTGAGGAAGAGTATGAAGACAAAGAAGGCAACATCTATAATAAGAAGACATACACTGACTTACAGCGCCAGGGACTGATATGA
>Glyma.06g127500.1.p sequence-type=predicted peptide transcript=Glyma.06g127500.1 locus=Glyma.06g127500 ID=Glyma.06g127500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSSTVLEVTRAAHEEVERLERLIVKELQNDPASNKERLYQSHRVRNMIDTITSTTEKLIGVYEDNDNARKDEIAALGGQTATGINVFSAFYDRLKEIREYHRKHPVARVVDANDDYETLLNEEPQIEFSGEESLGRYLDLHELYYQYVNSKFGEPIEYSAYLDVFSDTDKIPRKMKMTRQYREYLANLLEYLLYFFQRTEPLQDLDRILSKVTTEFEESWVVGKVQRWENDNQENGHVLAEHAPIDLDYYSTIEELMEVGPERLKEALAALGLKTGGTVQQRAERLFLTKHTPLEKLDRKHFAKGACGVEKNGVAAVPQEDGNSKEIALMEAKMTKLCHLLEETIARTKDNVVKKQALTYEEMEAEREEEETQEDSESEDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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