Glyma.06g127200

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Report for Sequence Feature Glyma.06g127200

Feature Type:	gene_model
Chromosome:	Gm06
Start:	10423873
stop:	10430156
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.06g127200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G31910.1	AT	GHMP kinase family protein	JGI	N/A	IEA
GO:0016310	GO-bp	phosphorylation	EnsemblGenomes	N/A	IEA
GO:0004631	GO-mf	phosphomevalonate kinase activity	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	JGI	N/A	IEA
KOG4519	KOG	Phosphomevalonate kinase	JGI	N/A	IEA
PF00288	PFAM	GHMP kinases N terminal domain	JGI	N/A	IEA
PF08544	PFAM	GHMP kinases C terminal	JGI	N/A	IEA
PWY-5910	SoyCyc9	superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate)	Plant Metabolic Network		ISS
PWY-922	SoyCyc9	mevalonate pathway I	Plant Metabolic Network		ISS
GN7V-63151	SoyCyc9-rxn	phosphomevalonate kinase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.06g127200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g127200 not represented in the dataset	Glyma.06g127200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.06g127200

Paralog	Evidence	Comments
Glyma.04g237000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g127200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma06g13260	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.06g127200

Limit To All Plant Sequences

>Glyma.06g127200.2 sequence-type=transcript locus=Glyma.06g127200 ID=Glyma.06g127200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCGCCACGTGCAACGCGAGGCCATTCATTCATTATTTGTTTCTTCTGTTTCTTCCCCGCTCGTGAGAGGAAAATACAACACTGAAAGTGAAACAATACTATAGTGCCTGGTGGTGATCGCATCGCATCTGCAACAAGCACAACATCGATGGCCGACTCCCGGGAAAGTGCTTATGACCGGTGGTTACCTCATTTTGGAGCGACCTAATCCAGGACTTGTCCTCAGCACCAACGCTCGCTTTTACGCCATTATCAAACCAATTCATCACGAAATCAAACCCGATTCCTGGGCATGGGCATGGACAGATATCAGATTAACCTCTCCTCAGCTCTGCAGACAAGCCCTCTACAAACTCGCTCTCAAAAATCTCGCCATCCAAACCGTTTCCCCAAGTGATACGAGAAATCCTTTTGTGGAATATGCGATTCAGTATTCCGTGGCTGCTGCTTATGCAACGTTTGACCAGAATAAAAAAGAGCTGTTGCACAAACTACTTTTACATGGTCTTGACATTACAATTTTGGGTGGCAATGATTTTTATTCATATAGGAATGAGATTGAGAGACGTGGACTCCCTTTGACACCGGAATCGTTGGCCACCCTTCTGCCTTTTTCCTCCATTACCTTCAATACTGATGATGCCGATGGAGGGAGTTGCAAACCTGAAGTGGCAAAAACTGGTTTGGGCTCGTCTGCAGCGATGACAACGGCTGTAGTTGCTGCTTTACTTCATTACCTGGATGTTGTAAAGCTTTCCTCTTCGAAAGATCATTGGGAAAGGAAGGATGTTGCAGATCTTGATATGGTGCATAAAATAGCACAAACTGCACACTGTATTGCACAGGGGAAAGTTGGCAGTGGGTTTGATGTCAGTTCAGCTGTGTATGGCAGTCAGCGCTATGTGCGGTTTTCACCAGAAGTGATTTCTTCCACTAAGGTAGGAGATATAGCAGTGCCTTTGCCAGATAGTATCACTGAAATTATAAAAGGAAATTGGGACCATGACACAGCTGAGTTCTCTTTACCACCTTTGATGACTCTTTTACTAGGAGAACCTGGAACTGGTGGATCATCCACACCATCGATGGTTGGTGCTGTTAAAAAATGGCAAAAGTCTGACCCTCAGAAATCCCTGGACACATGGAGAAGATTGTCAGAGGCAAATTCAGCATTGGAAATGCAACTAAACTTGTTAAGCAAATTAGCAAAGGAACAATGGAATGCATATAAATCTGTGATTGACAGCTGCAGCATGCTAAGATCTGACAAGTGGATAGAACAAGCTTCAGAACCAAACAAGGAAGCAATTATTAAAGCACTGCTAGGAGCAAAAGAAGCCATGCTGGGGATTAGATATCGTATGAGCCAAATGGGGGAGGCTGCAGGTGTTCCAATTGAACCAGAATCACAAACACAACTTTTAGATGCTACAGTGAACTTGGAAGGAGTATTGTTGGCTGGAGTGCCAGGGGCAGGAGGATTTGATGCAGTCTTTGCTGTTACCTTGGGAGATTCGAGCAGCAATGTGACAAAAATATGGAGTTCACTCAATGTCCTTGCCTTGTTGGTTAAAGAAGATCCTTGTGGCGTTTGTTTAGAAAAGGCTGACCCACGAACCAATGAAATCACATCAGCTGTGTCTTCAATTCATATTCAATAAGTCCATTTCCATCAATTAAAATTTGTATGTCACCACAAAATAGTTCGGCGGACTGTGGCTTCACTAGGTATTAGTGTTTGCTTCCTTTTTTTTTTTTTTTCAATTGCGGGGGAAAATGAGTGAAAGATTGAAAGTAAGCTTTAATGGTTATAGTTTTTTTTCCTTCAAGTGAAGCCCCCTCCAATTATTCGTGTTTTGTAAACGAGCAGGAGATTCTTTGAATCTAGTTTCCTATAGCCTAGTCAGAACAGAAGAAAACATCAAAATTTCAGATTTGTTGTGTAACATCTTCCGTGCTTGTTCAGATGTACCTACTTTAATACAACTGGTCGAGAGAATACGTTAAATAACTTAGCTAAAACTTTCCTCGCAACTTTGGTTTCTTTCCCCTCATATGTCTGACATGTACTGCGTGTGATGTAATA

Coding sequences of Glyma.06g127200

Limit To All Plant Sequences

>Glyma.06g127200.1 sequence-type=CDS polypeptide=Glyma.06g127200.1.p locus=Glyma.06g127200 ID=Glyma.06g127200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGAGGTTGTTACTTCAGCTCCCGGGAAAGTGCTTATGACCGGTGGTTACCTCATTTTGGAGCGACCTAATCCAGGACTTGTCCTCAGCACCAACGCTCGCTTTTACGCCATTATCAAACCAATTCATCACGAAATCAAACCCGATTCCTGGGCATGGGCATGGACAGATATCAGATTAACCTCTCCTCAGCTCTGCAGACAAGCCCTCTACAAACTCGCTCTCAAAAATCTCGCCATCCAAACCGTTTCCCCAAGTGATACGAGAAATCCTTTTGTGGAATATGCGATTCAGTATTCCGTGGCTGCTGCTTATGCAACGTTTGACCAGAATAAAAAAGAGCTGTTGCACAAACTACTTTTACATGGTCTTGACATTACAATTTTGGGTGGCAATGATTTTTATTCATATAGGAATGAGATTGAGAGACGTGGACTCCCTTTGACACCGGAATCGTTGGCCACCCTTCTGCCTTTTTCCTCCATTACCTTCAATACTGATGATGCCGATGGAGGGAGTTGCAAACCTGAAGTGGCAAAAACTGGTTTGGGCTCGTCTGCAGCGATGACAACGGCTGTAGTTGCTGCTTTACTTCATTACCTGGATGTTGTAAAGCTTTCCTCTTCGAAAGATCATTGGGAAAGGAAGGATGTTGCAGATCTTGATATGGTGCATAAAATAGCACAAACTGCACACTGTATTGCACAGGGGAAAGTTGGCAGTGGGTTTGATGTCAGTTCAGCTGTGTATGGCAGTCAGCGCTATGTGCGGTTTTCACCAGAAGTGATTTCTTCCACTAAGGTAGGAGATATAGCAGTGCCTTTGCCAGATAGTATCACTGAAATTATAAAAGGAAATTGGGACCATGACACAGCTGAGTTCTCTTTACCACCTTTGATGACTCTTTTACTAGGAGAACCTGGAACTGGTGGATCATCCACACCATCGATGGTTGGTGCTGTTAAAAAATGGCAAAAGTCTGACCCTCAGAAATCCCTGGACACATGGAGAAGATTGTCAGAGGCAAATTCAGCATTGGAAATGCAACTAAACTTGTTAAGCAAATTAGCAAAGGAACAATGGAATGCATATAAATCTGTGATTGACAGCTGCAGCATGCTAAGATCTGACAAGTGGATAGAACAAGCTTCAGAACCAAACAAGGAAGCAATTATTAAAGCACTGCTAGGAGCAAAAGAAGCCATGCTGGGGATTAGATATCGTATGAGCCAAATGGGGGAGGCTGCAGGTGTTCCAATTGAACCAGAATCACAAACACAACTTTTAGATGCTACAGTGAACTTGGAAGGAGTATTGTTGGCTGGAGTGCCAGGGGCAGGAGGATTTGATGCAGTCTTTGCTGTTACCTTGGGAGATTCGAGCAGCAATGTGACAAAAATATGGAGTTCACTCAATGTCCTTGCCTTGTTGGTTAAAGAAGATCCTTGTGGCGTTTGTTTAGAAAAGGCTGACCCACGAACCAATGAAATCACATCAGCTGTGTCTTCAATTCATATTCAATAA

>Glyma.06g127200.2 sequence-type=CDS polypeptide=Glyma.06g127200.2.p locus=Glyma.06g127200 ID=Glyma.06g127200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCGGTGGTTACCTCATTTTGGAGCGACCTAATCCAGGACTTGTCCTCAGCACCAACGCTCGCTTTTACGCCATTATCAAACCAATTCATCACGAAATCAAACCCGATTCCTGGGCATGGGCATGGACAGATATCAGATTAACCTCTCCTCAGCTCTGCAGACAAGCCCTCTACAAACTCGCTCTCAAAAATCTCGCCATCCAAACCGTTTCCCCAAGTGATACGAGAAATCCTTTTGTGGAATATGCGATTCAGTATTCCGTGGCTGCTGCTTATGCAACGTTTGACCAGAATAAAAAAGAGCTGTTGCACAAACTACTTTTACATGGTCTTGACATTACAATTTTGGGTGGCAATGATTTTTATTCATATAGGAATGAGATTGAGAGACGTGGACTCCCTTTGACACCGGAATCGTTGGCCACCCTTCTGCCTTTTTCCTCCATTACCTTCAATACTGATGATGCCGATGGAGGGAGTTGCAAACCTGAAGTGGCAAAAACTGGTTTGGGCTCGTCTGCAGCGATGACAACGGCTGTAGTTGCTGCTTTACTTCATTACCTGGATGTTGTAAAGCTTTCCTCTTCGAAAGATCATTGGGAAAGGAAGGATGTTGCAGATCTTGATATGGTGCATAAAATAGCACAAACTGCACACTGTATTGCACAGGGGAAAGTTGGCAGTGGGTTTGATGTCAGTTCAGCTGTGTATGGCAGTCAGCGCTATGTGCGGTTTTCACCAGAAGTGATTTCTTCCACTAAGGTAGGAGATATAGCAGTGCCTTTGCCAGATAGTATCACTGAAATTATAAAAGGAAATTGGGACCATGACACAGCTGAGTTCTCTTTACCACCTTTGATGACTCTTTTACTAGGAGAACCTGGAACTGGTGGATCATCCACACCATCGATGGTTGGTGCTGTTAAAAAATGGCAAAAGTCTGACCCTCAGAAATCCCTGGACACATGGAGAAGATTGTCAGAGGCAAATTCAGCATTGGAAATGCAACTAAACTTGTTAAGCAAATTAGCAAAGGAACAATGGAATGCATATAAATCTGTGATTGACAGCTGCAGCATGCTAAGATCTGACAAGTGGATAGAACAAGCTTCAGAACCAAACAAGGAAGCAATTATTAAAGCACTGCTAGGAGCAAAAGAAGCCATGCTGGGGATTAGATATCGTATGAGCCAAATGGGGGAGGCTGCAGGTGTTCCAATTGAACCAGAATCACAAACACAACTTTTAGATGCTACAGTGAACTTGGAAGGAGTATTGTTGGCTGGAGTGCCAGGGGCAGGAGGATTTGATGCAGTCTTTGCTGTTACCTTGGGAGATTCGAGCAGCAATGTGACAAAAATATGGAGTTCACTCAATGTCCTTGCCTTGTTGGTTAAAGAAGATCCTTGTGGCGTTTGTTTAGAAAAGGCTGACCCACGAACCAATGAAATCACATCAGCTGTGTCTTCAATTCATATTCAATAA

Predicted protein sequences of Glyma.06g127200

Limit To All Plant Sequences

>Glyma.06g127200.1.p sequence-type=predicted peptide transcript=Glyma.06g127200.1 locus=Glyma.06g127200 ID=Glyma.06g127200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEVVTSAPGKVLMTGGYLILERPNPGLVLSTNARFYAIIKPIHHEIKPDSWAWAWTDIRLTSPQLCRQALYKLALKNLAIQTVSPSDTRNPFVEYAIQYSVAAAYATFDQNKKELLHKLLLHGLDITILGGNDFYSYRNEIERRGLPLTPESLATLLPFSSITFNTDDADGGSCKPEVAKTGLGSSAAMTTAVVAALLHYLDVVKLSSSKDHWERKDVADLDMVHKIAQTAHCIAQGKVGSGFDVSSAVYGSQRYVRFSPEVISSTKVGDIAVPLPDSITEIIKGNWDHDTAEFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSLDTWRRLSEANSALEMQLNLLSKLAKEQWNAYKSVIDSCSMLRSDKWIEQASEPNKEAIIKALLGAKEAMLGIRYRMSQMGEAAGVPIEPESQTQLLDATVNLEGVLLAGVPGAGGFDAVFAVTLGDSSSNVTKIWSSLNVLALLVKEDPCGVCLEKADPRTNEITSAVSSIHIQ*

>Glyma.06g127200.2.p sequence-type=predicted peptide transcript=Glyma.06g127200.2 locus=Glyma.06g127200 ID=Glyma.06g127200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTGGYLILERPNPGLVLSTNARFYAIIKPIHHEIKPDSWAWAWTDIRLTSPQLCRQALYKLALKNLAIQTVSPSDTRNPFVEYAIQYSVAAAYATFDQNKKELLHKLLLHGLDITILGGNDFYSYRNEIERRGLPLTPESLATLLPFSSITFNTDDADGGSCKPEVAKTGLGSSAAMTTAVVAALLHYLDVVKLSSSKDHWERKDVADLDMVHKIAQTAHCIAQGKVGSGFDVSSAVYGSQRYVRFSPEVISSTKVGDIAVPLPDSITEIIKGNWDHDTAEFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSLDTWRRLSEANSALEMQLNLLSKLAKEQWNAYKSVIDSCSMLRSDKWIEQASEPNKEAIIKALLGAKEAMLGIRYRMSQMGEAAGVPIEPESQTQLLDATVNLEGVLLAGVPGAGGFDAVFAVTLGDSSSNVTKIWSSLNVLALLVKEDPCGVCLEKADPRTNEITSAVSSIHIQ*

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