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Report for Sequence Feature Glyma.06g125700

Feature Type:gene_model
Chromosome:Gm06
Start:10216466
stop:10220017
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.06g125700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G24120.1AT ATSIG5,SIG5,SIGE JGI N/AIEA
GO:0006352GO-bp DNA-templated transcription, initiation JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003700GO-mf DNA-binding transcription factor activity JGI N/AIEA
GO:0016987GO-mf sigma factor activity JGI N/AIEA
K03093KEGG Transcription machinery JGI N/AIEA
PTHR30603PantherFam RNA POLYMERASE SIGMA FACTOR RPO JGI N/AIEA
PTHR30603:SF4PantherFam RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL JGI N/AIEA
PF04539Pfam Sigma-70 region 3 JGI N/AIEA
PF04542Pfam Sigma-70 region 2 JGI N/AIEA
PF04545Pfam Sigma-70, region 4 JGI N/AIEA

Proteins Associated with Glyma.06g125700
LocusGene SymbolProtein Name
SIG5B RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like

Gene model name correspondences to Glyma.06g125700 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g13100 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g125700
>Glyma.06g125700.1 sequence-type=CDS polypeptide=Glyma.06g125700.1.p locus=Glyma.06g125700 id=Glyma.06g125700.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGGAGTTGTGACTGTTTCTAGCTCGGCTGCTCGGACTCCATTGGGATTGAATACAAAGTTTTGCAATAATCGTCTGAAGAGACCTTTAATTGTAGCATTTAAGGGGGATAAGCACAATGACTCAGCTTTGGTTGCAACACAAGAGAAAATTCCTGTGCCGGTTGAAACGGCGAAGAAGACGCAGAAAAAGAGGATAGGAAAAACTAACAAACTACCTAAGAGAGAGAGTTCTCCATCTTCCATGGATGTGGACTACAATGAAGCTGCTGCCATGCTTGAAAATCTATACAAACTTAGCCCTGCTTCTGATAATGCAGAATGCATAGATGGTAAAATCAAAAGAGTCTCTCGGAGAGGGAAGAAGGTTGTTGATGAAAGTGAAGAAAAGGAGTTAAAGGGCGATTGGGTGGTCAGAAACCAGAACAAGAACAAGAAACCTAAACGATTGAATCTTGATCAGAGAATTTCATTAAAGAATAACAAAAGTGGGGACGAAGTCATTCCAACTCGAAAGAAAAGAAATGTTGGGAACAAAATTGAGAAGATTGAAGAACTTATTCGGGAATATTCAGTATCAACTGATTTTGTCAGTATGGATTGGAAAAGAATGAGAATACCTCCCGTTCTTTCTTCTTCAGAGCATGCTTGGTTGTTCAAATTGATGCAACCTATGAAGGCACTGCTTCAAGTGAAAGAAGATTTACAGCAGGAGTTGACAAGAGAACCTGCAGATGGTGAACTAGCTGATGCAACAAACATGAGCATTACACAAGTAAGGAAAGCAATAGATGTTGGTCAAGCTGCAAGAAATAAACTCATAAAGCACAATCTCCGGCTTGTTTTGTTCGTGATCAACAAATATTTTACAGATTTTGCAAGTGGCCCTAGGTTTCAAGATCTTTGCCAGGCAGGAGTTAAGGGGCTTATAACAGCAATCGATCGTTTTGAGCCAAACAGGAGATTTCGGCTATCAACTTATAGTTTGTTTTGGATAAGACATGCTATCATTCGTTCAATGACCCTCTCAAACTTCACACGTGTTCCCTTTGGACTTGAATCGGTTCGAGCAGAAATTCAAAAAGCTAAAACTGAGTTAACATTTGAGCTTCAGAGGTCACCAACAGAGGAAGAAATAATAGAAAGAGTTCATATATCCCCTGAAAGATACCATGACGTAATTAAGGCATCAAAATCCATTCTTTCTCTGAACTCGAGACATACAACCACACAAGAGGAGTTCATTAATGGGATCGTTGATGATGATGGTGTTAATGGTGATAATAGGAAACAACCTGCTCTACTAAGGCTTGCTCTTGATGATGTGCTTGATTCCCTGAAGCCGAAGGAGAGCTTGGTGATCAGACAGAGATTTGGACTTGATGGCAAGGGTGACAGAACATTGGGAGAAATTGCTGGGAACTTGAATATATCTAGGGAAATGGTTAGAAAGCACGAAGTCAAGGCTCTTATGAAGCTCAAGCATTCAGCTAGATTGGATTATCTTCGCCGTTATGTTGTATAA
Predicted protein sequences of Glyma.06g125700
>Glyma.06g125700.1.p sequence-type=predicted peptide transcript=Glyma.06g125700.1 locus=Glyma.06g125700 id=Glyma.06g125700.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MGVVTVSSSAARTPLGLNTKFCNNRLKRPLIVAFKGDKHNDSALVATQEKIPVPVETAKKTQKKRIGKTNKLPKRESSPSSMDVDYNEAAAMLENLYKLSPASDNAECIDGKIKRVSRRGKKVVDESEEKELKGDWVVRNQNKNKKPKRLNLDQRISLKNNKSGDEVIPTRKKRNVGNKIEKIEELIREYSVSTDFVSMDWKRMRIPPVLSSSEHAWLFKLMQPMKALLQVKEDLQQELTREPADGELADATNMSITQVRKAIDVGQAARNKLIKHNLRLVLFVINKYFTDFASGPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSNFTRVPFGLESVRAEIQKAKTELTFELQRSPTEEEIIERVHISPERYHDVIKASKSILSLNSRHTTTQEEFINGIVDDDGVNGDNRKQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHSARLDYLRRYVV*






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