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Report for Sequence Feature Glyma.06g125200

Feature Type:gene_model
Chromosome:Gm06
Start:10209787
stop:10215982
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g125200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G27940.1AT manganese tracking factor for mitochondrial SOD2 JGI N/AIEA
GO:0006839GO-bp mitochondrial transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0005743GO-cc mitochondrial inner membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0022857GO-mf transmembrane transporter activity EnsemblGenomesN/AIEA
KOG0761 KOG Mitochondrial carrier protein CGI-69 JGI N/AIEA
PTHR24089Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24089:SF43Panther JGI N/AIEA
PF00153PFAM Mitochondrial carrier protein JGI N/AIEA

Expression Patterns of Glyma.06g125200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g125200
ParalogEvidenceComments
Glyma.04g238600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g125200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g13050 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g125200
>Glyma.06g125200.2 sequence-type=transcript locus=Glyma.06g125200 ID=Glyma.06g125200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTTGTTAACAGCAACAAGAAAGAGAGAGCCTGAAAAAACATATATACTAGTTTGATGCTAAAATAAAATTCCGATTCCGTCCGCCGCTAATAAACCCTAATAAGCTTGGACTGTTAATAACTTCACTCAGTACCGGAAGGTACTGGCTTGGCTAAGGTAGGGCCAGTTTGAATATTTTGCTCAAACTCAAGCGTTTTCTAGGGTTTTTTCTGCTGAAAACGACGTGCCCCATTCTTGTCAACAAACGTGGCGCGCTTCTTAACATAAGCACTTACAATGGCGGATTCTGAGCGAATCCAAAATCCGTGGATGGCTTCGGAGCAAACTGCAATTGAAATGAACGCCGATTCCAGGGAATGCTCTTCTCTTCCTCATCCGCCGCCGCTAAAATTATCTAATTCTGATCAATTGGGAATCGGAGCACGAGCTTTCTCCGCCGCCGGCGCCGCCTTCCTCTCCGCCATCATTGTCAATCCCCTCGACGTTGCCAAGACAAGGTTGCAAGCACAAGCGGCAGGGGTCGCGTATTCCCATCCACTCAGTAATATGACCAGTAGAATGGGTTGTTTTGGGCCAAATATGATATTTGCCGATTTAAGATGTTCACCATCATGCCACCGGGCTGGATTCCAGGGCACAGTGTCCATTTGTCCTCCTGAGTGTTTTCGCTACAAAGGAACACTAGATGTCATCTACAAAATTATAAAGCAGGAGGGATTTTCTAGGCTATGGAGAGGCACAAATGCTGGCCTGGCTCTTGCAGTACCAACTGTGGGAATTTACCTTCCTTGCTATGACATACTCCGCAATTGGTTGGAGGAATTTACAGCTAAAAATGCACCAACCACAACTACTTATGTACCTCTAGTAGCTGGTTCATTGGCACGCTCTCTAGCTTGTGCTACTTGCTACCCTATTGAACTTGCTAGAACTCGTATGCAGGCATTTAAAGAGACTCAAATTGGTAAAAAGCCTCCTGGAGTGATCCAGACTCTGCTAGGTGTTGTCTCAAATGTCAAGAGCACAAACACGCCACAGAACAGCTTGCAAGGTTATCGTGTTTTGTGGACTGGCATGGGGGCTCAACTTGCCCGTGATGTACCCTTCTCTGCCATATGTTGGTCAACACTTGAACCAACTAGAAGAAAACTTCTTGGTTTGATTGGAGGTGATGATGCCAATGCATTGAGTGTTCTTGGGGCAAATTTTGGAGCTGGGTTTGTTGCAGGAACTTTAGCAGCTGGAGCCACATGTCCACTAGATGTTGCAAAAACTCGAAGGCAGATAGAGAGGGATCCTGTTAGGGCATTGAAAATGACTACAAGACAGACACTGATGGAGGTGTGGAGAGATGGAGGTTTGAAAGGATTGTTTACGGGTGTTGGTCCACGAGTTGGTCGAGCAGGCCCCTCCGTTGGAATTGTGATTTCATTTTATGAAGTTGTAAAGTTTGTTCTACATCATTAGTACACAGCATCATCATGATTTTCTGCACACTTTTTTTGCTGACAAAGCAGTTTTTATTCAGAACCTCTGGAGATTGCGAGCAATTTTTTTTGGAATGGGAATCATTCCAATCCATCCTGGCCATAAACTAACATAATTGAATAGGAAAATGACCGGCATAGGACACACTTAGGTTTTATGAGCTGTTTGTTATTATTAATGTTTTTTCTTTTTGCTGCTTTTGACAAGCAGAAATTTTGTTACACTTGGGATGCTCCCCTGAACTataactgaataaataaaaatatgaataaatTGAGTTCTTTACCTCCC
Coding sequences of Glyma.06g125200
>Glyma.06g125200.1 sequence-type=CDS polypeptide=Glyma.06g125200.1.p locus=Glyma.06g125200 ID=Glyma.06g125200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGATTCTGAGCGAATCCAAAATCCGTGGATGGCTTCGGAGCAAACTGCAATTGAAATGAACGCCGATTCCAGGGAATGCTCTTCTCTTCCTCATCCGCCGCCGCTAAAATTATCTAATTCTGATCAATTGGGAATCGGAGCACGAGCTTTCTCCGCCGCCGGCGCCGCCTTCCTCTCCGCCATCATTGTCAATCCCCTCGACGTTGCCAAGACAAGGTTGCAAGCACAAGCGGCAGGGGTCGCGTATTCCCATCCACTCAGTAATATGACCAGTAGAATGGGTTGTTTTGGGCCAAATATGATATTTGCCGATTTAAGATGTTCACCATCATGCCACCGGGCTGGATTCCAGGGCACAGTGTCCATTTGTCCTCCTGAGTGTTTTCGCTACAAAGGAACACTAGATGTCATCTACAAAATTATAAAGCAGGAGGGATTTTCTAGGCTATGGAGAGGCACAAATGCTGGCCTGGCTCTTGCAGTACCAACTGTGGGAATTTACCTTCCTTGCTATGACATACTCCGCAATTGGTTGGAGGAATTTACAGCTAAAAATGCACCAACCACAACTACTTATGTACCTCTAGTAGCTGGTTCATTGGCACGCTCTCTAGCTTGTGCTACTTGCTACCCTATTGAACTTGCTAGAACTCGTATGCAGGCATTTAAAGAGACTCAAATTGGTAAAAAGCCTCCTGGAGTGATCCAGACTCTGCTAGGTGTTGTCTCAAATGTCAAGAGCACAAACACGCCACAGAACAGCTTGCAAGGTTATCGTGTTTTGTGGACTGGCATGGGGGCTCAACTTGCCCGTGATGTACCCTTCTCTGCCATATGTTGGTCAACACTTGAACCAACTAGAAGAAAACTTCTTGGTTTGATTGGAGGTGATGATGCCAATGCATTGAGTGTTCTTGGGGCAAATTTTGGAGCTGGGTTTGTTGCAGGAACTTTAGCAGCTGGAGCCACATGTCCACTAGATGTTGCAAAAACTCGAAGGCAGATAGAGAGGGATCCTGTTAGGGCATTGAAAATGACTACAAGACAGACACTGATGGAGGTGTGGAGAGATGGAGGTTTGAAAGGATTGTTTACGGGTGTTGGTCCACGAGTTGGTCGAGCAGGCCCCTCCGTTGGAATTGTGATTTCATTTTATGAAGTTGTAAAGTTTGTTCTACATCATTAG

>Glyma.06g125200.2 sequence-type=CDS polypeptide=Glyma.06g125200.2.p locus=Glyma.06g125200 ID=Glyma.06g125200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGATTCTGAGCGAATCCAAAATCCGTGGATGGCTTCGGAGCAAACTGCAATTGAAATGAACGCCGATTCCAGGGAATGCTCTTCTCTTCCTCATCCGCCGCCGCTAAAATTATCTAATTCTGATCAATTGGGAATCGGAGCACGAGCTTTCTCCGCCGCCGGCGCCGCCTTCCTCTCCGCCATCATTGTCAATCCCCTCGACGTTGCCAAGACAAGGTTGCAAGCACAAGCGGCAGGGGTCGCGTATTCCCATCCACTCAGTAATATGACCAGTAGAATGGGTTGTTTTGGGCCAAATATGATATTTGCCGATTTAAGATGTTCACCATCATGCCACCGGGCTGGATTCCAGGGCACAGTGTCCATTTGTCCTCCTGAGTGTTTTCGCTACAAAGGAACACTAGATGTCATCTACAAAATTATAAAGCAGGAGGGATTTTCTAGGCTATGGAGAGGCACAAATGCTGGCCTGGCTCTTGCAGTACCAACTGTGGGAATTTACCTTCCTTGCTATGACATACTCCGCAATTGGTTGGAGGAATTTACAGCTAAAAATGCACCAACCACAACTACTTATGTACCTCTAGTAGCTGGTTCATTGGCACGCTCTCTAGCTTGTGCTACTTGCTACCCTATTGAACTTGCTAGAACTCGTATGCAGGCATTTAAAGAGACTCAAATTGGTAAAAAGCCTCCTGGAGTGATCCAGACTCTGCTAGGTGTTGTCTCAAATGTCAAGAGCACAAACACGCCACAGAACAGCTTGCAAGGTTATCGTGTTTTGTGGACTGGCATGGGGGCTCAACTTGCCCGTGATGTACCCTTCTCTGCCATATGTTGGTCAACACTTGAACCAACTAGAAGAAAACTTCTTGGTTTGATTGGAGGTGATGATGCCAATGCATTGAGTGTTCTTGGGGCAAATTTTGGAGCTGGGTTTGTTGCAGGAACTTTAGCAGCTGGAGCCACATGTCCACTAGATGTTGCAAAAACTCGAAGGCAGATAGAGAGGGATCCTGTTAGGGCATTGAAAATGACTACAAGACAGACACTGATGGAGGTGTGGAGAGATGGAGGTTTGAAAGGATTGTTTACGGGTGTTGGTCCACGAGTTGGTCGAGCAGGCCCCTCCGTTGGAATTGTGATTTCATTTTATGAAGTTGTAAAGTTTGTTCTACATCATTAG
Predicted protein sequences of Glyma.06g125200
>Glyma.06g125200.1.p sequence-type=predicted peptide transcript=Glyma.06g125200.1 locus=Glyma.06g125200 ID=Glyma.06g125200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADSERIQNPWMASEQTAIEMNADSRECSSLPHPPPLKLSNSDQLGIGARAFSAAGAAFLSAIIVNPLDVAKTRLQAQAAGVAYSHPLSNMTSRMGCFGPNMIFADLRCSPSCHRAGFQGTVSICPPECFRYKGTLDVIYKIIKQEGFSRLWRGTNAGLALAVPTVGIYLPCYDILRNWLEEFTAKNAPTTTTYVPLVAGSLARSLACATCYPIELARTRMQAFKETQIGKKPPGVIQTLLGVVSNVKSTNTPQNSLQGYRVLWTGMGAQLARDVPFSAICWSTLEPTRRKLLGLIGGDDANALSVLGANFGAGFVAGTLAAGATCPLDVAKTRRQIERDPVRALKMTTRQTLMEVWRDGGLKGLFTGVGPRVGRAGPSVGIVISFYEVVKFVLHH*

>Glyma.06g125200.2.p sequence-type=predicted peptide transcript=Glyma.06g125200.2 locus=Glyma.06g125200 ID=Glyma.06g125200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADSERIQNPWMASEQTAIEMNADSRECSSLPHPPPLKLSNSDQLGIGARAFSAAGAAFLSAIIVNPLDVAKTRLQAQAAGVAYSHPLSNMTSRMGCFGPNMIFADLRCSPSCHRAGFQGTVSICPPECFRYKGTLDVIYKIIKQEGFSRLWRGTNAGLALAVPTVGIYLPCYDILRNWLEEFTAKNAPTTTTYVPLVAGSLARSLACATCYPIELARTRMQAFKETQIGKKPPGVIQTLLGVVSNVKSTNTPQNSLQGYRVLWTGMGAQLARDVPFSAICWSTLEPTRRKLLGLIGGDDANALSVLGANFGAGFVAGTLAAGATCPLDVAKTRRQIERDPVRALKMTTRQTLMEVWRDGGLKGLFTGVGPRVGRAGPSVGIVISFYEVVKFVLHH*






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