SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.06g117800): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.06g117800): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.06g117800

Feature Type:gene_model
Chromosome:Gm06
Start:9594210
stop:9597104
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g117800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G77290.1AT Glutathione S-transferase family protein JGI N/AIEA
GO:0006749GO-bp glutathione metabolic process EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004364GO-mf glutathione transferase activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG4420 KOG Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) JGI N/AIEA
PTHR11260Panther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING JGI N/AIEA
PTHR11260:SF31Panther JGI N/AIEA
PF00043PFAM Glutathione S-transferase, C-terminal domain JGI N/AIEA
PF02798PFAM Glutathione S-transferase, N-terminal domain JGI N/AIEA
GN7V-67709SoyCyc9-rxn Maleylacetoacetate isomerase Plant Metabolic Network ISS

Proteins Associated with Glyma.06g117800
LocusGene SymbolProtein Name
TCHQD1 glutathione S-transferase TCHQD-like

Expression Patterns of Glyma.06g117800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g117800 not represented in the dataset
Glyma.06g117800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g117800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g12400 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g117800
>Glyma.06g117800.2 sequence-type=transcript locus=Glyma.06g117800 ID=Glyma.06g117800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTCTCTGGAGGCTACTGTTGCATCCCTGCCAAGTTGACATCAGTGATCTGAATGATTTCTGGTGTTGGAACAGACGATAGTTCACTTGTAGCACAACCTGGTACTTCCTAAGAGGTGATAAGAAAATGCAATTGTACCATCATCCATTTGATTTGGACTCCCAGAAGGTGAGACTTGCGTTGGAAGAGAAAGGCATTGATTATACATCTCACCATGCCAATCCCATAACTGGCAAGAACTTGGATTCTTCATTCTTCAACATGAATCCCGGTGGAAGACTCCCTGTTTTCCAAAATGGGTCTCACATCCTTTACAAGACTATTGATATAATCCAGTACATAGAAAGAATTGCTGTGTTCTCCTCAGGGTCTGAGAATATCAGTAGCAGTAGCAGGGAAGTGATTGAATGGATGCAGAAGATACAAGAGTGGGATCCTAAGTATTTTTCCCTTTCCCATATACCAGAGAAATACAGGATATACGTTTCCAAGTTCTTAAGGCGAGTGGTGATTGCTCGAATGTCCGAGTCCCCAGAATTAGCGGGTGCTTACCATAAGAAGTTAAAAGAAGCCTATCAGACTGAAGAGAAATTGAAAGAGGCAGCTGTATTGAGAAGGAGCAAGGAGCATTTGATTAGGCTGCTTGATGAAGCAGAGAGGCAGCTGAGTGAAACACCTTATTTAGCAGGTGAAGAGTTTACCATGGCGGATGTCATGCTCATTCCGGTGTTGGCTCGTTTAGTACTCTTGGATTTGGAAAATGAGTACATAACTGGCAGGCCCAACATTGCTGAGTATTGGGTTTTTGTTCAGCAGAGGCCTAGTTATAGGAAGGTGATTGGTAGGTATTTTGATGGTTGGAAAAAACACAAGACATTGTTGAAAACTTGGTGCTTTGTTCGTATTAGAAGTTTGCTGAAGAGGTACTAGTGACTAGTGAGGTACATATTGGTTGCCAAAAGGAAGTTGCATAAGAGTGAATATATGAAAGAGCTTTTTGTGTGTGTTGTAGTCTTGTAGATAAGGAGTTATAATAAATATTGTTCTTTGTATTTTCCCTTTTGGTTTCAACAATCTTGTTTTTTTTTTTTGAGAGAAAAGGGAGATTCATTTTTCTTTCTCCCTTGCCAAATGGTGATGAGGGATGCATCTTAGTGCTCAGTCTCCAAAAAATCTTTGGACTTGGTTGGTACTAAAACAACTTACGGTTGCTATCTTCCTTCATTGGTAAAAGAAGGGGAAAATTTGTGTTTCTGCAATCAATTAGCAATTTCTGTGCAATGTTGTGTACTGATATTGGAACAATTCCTTCCTATGAGGATATCTGCTTGTTTTGTGTACACTTTTTTTGGTATCTGTAAATGCAATGGCAACAATAAAGTACTCATTTCAA
Coding sequences of Glyma.06g117800
>Glyma.06g117800.1 sequence-type=CDS polypeptide=Glyma.06g117800.1.p locus=Glyma.06g117800 ID=Glyma.06g117800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAATTGTACCATCATCCATTTGATTTGGACTCCCAGAAGGTGAGACTTGCGTTGGAAGAGAAAGGCATTGATTATACATCTCACCATGCCAATCCCATAACTGGCAAGAACTTGGATTCTTCATTCTTCAACATGAATCCCGGTGGAAGACTCCCTGTTTTCCAAAATGGGTCTCACATCCTTTACAAGACTATTGATATAATCCAGTACATAGAAAGAATTGCTGTGTTCTCCTCAGGGTCTGAGAATATCAGTAGCAGTAGCAGGGAAGTGATTGAATGGATGCAGAAGATACAAGAGTGGGATCCTAAGTATTTTTCCCTTTCCCATATACCAGAGAAATACAGGATATACGTTTCCAAGTTCTTAAGGCGAGTGGTGATTGCTCGAATGTCCGAGTCCCCAGAATTAGCGGGTGCTTACCATAAGAAGTTAAAAGAAGCCTATCAGACTGAAGAGAAATTGAAAGAGGCAGCTGTATTGAGAAGGAGCAAGGAGCATTTGATTAGGCTGCTTGATGAAGCAGAGAGGCAGCTGAGTGAAACACCTTATTTAGCAGGTGAAGAGTTTACCATGGCGGATGTCATGCTCATTCCGGTGTTGGCTCGTTTAGTACTCTTGGATTTGGAAAATGAGTACATAACTGGCAGGCCCAACATTGCTGAGTATTGGGTTTTTGTTCAGCAGAGGCCTAGTTATAGGAAGGTGATTGGTAGGTATTTTGATGGTTGGAAAAAACACAAGACATTGTTGAAAACTTGGTGCTTTGTTCGTATTAGAAGTTTGCTGAAGAGGTACTAG

>Glyma.06g117800.2 sequence-type=CDS polypeptide=Glyma.06g117800.2.p locus=Glyma.06g117800 ID=Glyma.06g117800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAATTGTACCATCATCCATTTGATTTGGACTCCCAGAAGGTGAGACTTGCGTTGGAAGAGAAAGGCATTGATTATACATCTCACCATGCCAATCCCATAACTGGCAAGAACTTGGATTCTTCATTCTTCAACATGAATCCCGGTGGAAGACTCCCTGTTTTCCAAAATGGGTCTCACATCCTTTACAAGACTATTGATATAATCCAGTACATAGAAAGAATTGCTGTGTTCTCCTCAGGGTCTGAGAATATCAGTAGCAGTAGCAGGGAAGTGATTGAATGGATGCAGAAGATACAAGAGTGGGATCCTAAGTATTTTTCCCTTTCCCATATACCAGAGAAATACAGGATATACGTTTCCAAGTTCTTAAGGCGAGTGGTGATTGCTCGAATGTCCGAGTCCCCAGAATTAGCGGGTGCTTACCATAAGAAGTTAAAAGAAGCCTATCAGACTGAAGAGAAATTGAAAGAGGCAGCTGTATTGAGAAGGAGCAAGGAGCATTTGATTAGGCTGCTTGATGAAGCAGAGAGGCAGCTGAGTGAAACACCTTATTTAGCAGGTGAAGAGTTTACCATGGCGGATGTCATGCTCATTCCGGTGTTGGCTCGTTTAGTACTCTTGGATTTGGAAAATGAGTACATAACTGGCAGGCCCAACATTGCTGAGTATTGGGTTTTTGTTCAGCAGAGGCCTAGTTATAGGAAGGTGATTGGTAGGTATTTTGATGGTTGGAAAAAACACAAGACATTGTTGAAAACTTGGTGCTTTGTTCGTATTAGAAGTTTGCTGAAGAGGTACTAG
Predicted protein sequences of Glyma.06g117800
>Glyma.06g117800.1.p sequence-type=predicted peptide transcript=Glyma.06g117800.1 locus=Glyma.06g117800 ID=Glyma.06g117800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQLYHHPFDLDSQKVRLALEEKGIDYTSHHANPITGKNLDSSFFNMNPGGRLPVFQNGSHILYKTIDIIQYIERIAVFSSGSENISSSSREVIEWMQKIQEWDPKYFSLSHIPEKYRIYVSKFLRRVVIARMSESPELAGAYHKKLKEAYQTEEKLKEAAVLRRSKEHLIRLLDEAERQLSETPYLAGEEFTMADVMLIPVLARLVLLDLENEYITGRPNIAEYWVFVQQRPSYRKVIGRYFDGWKKHKTLLKTWCFVRIRSLLKRY*

>Glyma.06g117800.2.p sequence-type=predicted peptide transcript=Glyma.06g117800.2 locus=Glyma.06g117800 ID=Glyma.06g117800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQLYHHPFDLDSQKVRLALEEKGIDYTSHHANPITGKNLDSSFFNMNPGGRLPVFQNGSHILYKTIDIIQYIERIAVFSSGSENISSSSREVIEWMQKIQEWDPKYFSLSHIPEKYRIYVSKFLRRVVIARMSESPELAGAYHKKLKEAYQTEEKLKEAAVLRRSKEHLIRLLDEAERQLSETPYLAGEEFTMADVMLIPVLARLVLLDLENEYITGRPNIAEYWVFVQQRPSYRKVIGRYFDGWKKHKTLLKTWCFVRIRSLLKRY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo