Glyma.06g116000

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Report for Sequence Feature Glyma.06g116000

Feature Type:	gene_model
Chromosome:	Gm06
Start:	9434950
stop:	9440888
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.06g116000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21690.1	AT	ATPase family associated with various cellular activities (AAA)	JGI	N/A	IEA
AT1G21690.3	AT	ATPase family associated with various cellular activities (AAA)	JGI	N/A	IEA
GO:0006260	GO-bp	DNA replication	EnsemblGenomes	N/A	IEA
GO:0006261	GO-bp	DNA-dependent DNA replication	EnsemblGenomes	N/A	IEA
GO:0006281	GO-bp	DNA repair	EnsemblGenomes	N/A	IEA
GO:0006281	GO-bp	DNA repair	JGI	N/A	IEA
GO:0006310	GO-bp	DNA recombination	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005663	GO-cc	DNA replication factor C complex	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0003689	GO-mf	DNA clamp loader activity	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	JGI	N/A	IEA
GO:0009378	GO-mf	four-way junction helicase activity	JGI	N/A	IEA
KOG0989	KOG	Replication factor C, subunit RFC4	JGI	N/A	IEA
PTHR11669	Panther	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	JGI	N/A	IEA
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI	N/A	IEA
PF08542	PFAM	Replication factor C C-terminal domain	JGI	N/A	IEA

Expression Patterns of Glyma.06g116000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g116000 not represented in the dataset	Glyma.06g116000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.06g116000

Paralog	Evidence	Comments
Glyma.04g246800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g116000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma06g12210	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.06g116000

Limit To All Plant Sequences

>Glyma.06g116000.2 sequence-type=transcript locus=Glyma.06g116000 ID=Glyma.06g116000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCATGCTCTCTACCCAAACCCATTCCAGATCCTAATTTCAAATAAGAACTGAAACCCTCACCCACCCTAAACCCCCTTCTTCCAAATTCCCAATTTCTTCTGCCGTTCGATTTCAGACTCTTCATTCGGGATTTGCCATAGCGATTCCTTGGTTCTCATTCATTCGTTGCGTGCTCGTTCGGCTGTTCTCGTCGTTCCAGTGAAGAGTTCCGTTTCAGTCATACAACCTTGCATGAGAATTGATGGCGCCAATCCTGCAGAGCTCTCAGCCATGGGTCGAGAAATACCGGCCAAAGCAAGTGAAAGATGTTGCCCACCAAGATGAAGTTGTTCGAGTACTAACAAACACCCTTGAAACTGGAAGTTGCCCCCACATGCTCTTCTATGGTCCTCCTGGCACGGGAAAAACAACTACTGCCCTTGCTATCGCCCATCAGCTTTTTGGTCCTGAGCTATATAAGTCTAGGGTGCTGGAGTTGAATGCAAGTGACGATAGAGGGATTAATGTTGTTCGAACAAAGATAAAAGATTTTGCTGCTGTTGCTGTTGGTACTAATCAGTGTAAAAATGGTTATCCTTGTCCACCATTTAAGATTATTGTTCTAGACGAGGCAGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGGCGTACAATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTATGTTAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAACCATTATCAGAAGAAATCATGAGCAGCCGGATATTATACATCTCCCAAGAAGAGGGACTCTGTCTTGATGCTGAGGCTCTTTCAACCCTGAGTTTTATTTCTCATGGAGATCTTCGCCGGGCAATCACATACTTGCAGTCTGCAGCTCGCTTATTTGGATCTTCAATTTCTTCAGAGAATCTGATTTCTGTGTCAGGGGTTGTTCCGGCAAAGGTTGTGGAGGCACTTCTTAAAGCTTGCAAAAGTGGTAATTTTGATTTGGCAAACAAGGAAGTCAACAATTTCATTGCAGAGGGATATCCAGCTTCTCAGATGCTTACTCAGAAAGCAAGAATATCAAAGAAGCTGGGTGAAGCTGATAAGTGCTTAGTTGACGGTGCTGATGAATACTTGCAACTTCTTGATGTGGTCAGCAATACGATTAAAGCTTTTAACAGCTTGCCAGAAGCATTTGCTTACGAATGTTAGATATTGGATAAATGTAAAGAAAAAGAATCACGTGTAATTCGGTATCACAAAATCAGATTTGATTACGTTTTTAACTTGCTTTATGTAGAAGTGGATTTTGAAGGATTCATCCAGCTTGGGTAATTGTACTCAAGTAAATGGCCTCGTAACAAGCAATGGGATAACTGGCATAGGACATTCCTGCGTACAAAATTGACGCTTCTTCGGATTAAGTGAAGAGTATATAACGGAACGAACAATTTTACTGTTTTTGCACTCATATATAAAGCAGTTAAGCACTCCTTTCATCTCAATTCCGTTGTTTCATCCCGAACGAATTCAATGCAACTTTTTAATCT

>Glyma.06g116000.3 sequence-type=transcript locus=Glyma.06g116000 ID=Glyma.06g116000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCATGCTCTCTACCCAAACCCATTCCAGATCCTAATTTCAAATAAGAACTGAAACCCTCACCCACCCTAAACCCCCTTCTTCCAAATTCCCAATTTCTTCTGCCGTTCGATTTCAGACTCTTCATTCGGGATTTGCCATAGCGATTCCTTGGTTCTCATTCATTCGTTGCGTGCTCGTTCGGCTGTTCTCGTCGTTCCAGTGAAGAGTTCCGTTTCAGTCATACAACCTTGCATGAGAATTGATGGCGCCAATCCTGCAGAGCTCTCAGCCATGGGTCGAGAAATACCGGCCAAAGCAAGTGAAAGATGTTGCCCACCAAGATGAAGTTGTTCGAGTACTAACAAACACCCTTGAAACTGGAAGTTGCCCCCACATGCTCTTCTATGGTCCTCCTGGCACGGGAAAAACAACTACTGCCCTTGCTATCGCCCATCAGCTTTTTGGTCCTGAGCTATATAAGTCTAGGGTGCTGGAGTTGAATGCAAGTGACGATAGAGGGATTAATGTTGTTCGAACAAAGATAAAAGATTTTGCTGCTGTTGCTGTTGGTACTAATCAGTGTAAAAATGGTTATCCTTGTCCACCATTTAAGATTATTGTTCTAGACGAGGCAGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGGCGTACAATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTATGTTAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAACCATTATCAGAAGAAATCATGAGCAGCCGGATATTATACATCTCCCAAGAAGAGGGACTCTGTCTTGATGCTGAGGCTCTTTCAACCCTGAGTTTTATTTCTCATGGAGATCTTCGCCGGGCAATCACATACTTGCAGTCTGCAGCTCGCTTATTTGGATCTTCAATTTCTTCAGAGAATCTGATTTCTGTGTCAGGGGTTGTTCCGGCAAAGGTTGTGGAGGCACTTCTTAAAGCTTGCAAAAGTGGTAATTTTGATTTGGCAAACAAGGAAGTCAACAATTTCATTGCAGAGGGATATCCAGCTTCTCAGATGCTTACTCAGTTATTTGAGGCCATTGTTGAAGAAAATGACTTATCTGATGAACAGAAAGCAAGAATATCAAAGAAGCTGGGTGAAGCTGATAAGGTGCTCTTAACCCCCCCCAACACACACACACACCCATTTGTTTCTTCTGTGCTTAGTTGACGGTGCTGATGAATACTTGCAACTTCTTGATGTGGTCAGCAATACGATTAAAGCTTTTAACAGCTTGCCAGAAGCATTTGCTTACGAATGTTAGATATTGGATAAATGTAAAGAAAAAGAATCACGTGTAATTCGGTATCACAAAATCAGATTTGATTACGTTTTTAACTTGCTTTATGTAGAAGTGGATTTTGAAGGATTCATCCAGCTTGGGTAATTGTACTCAAGTAAATGGCCTCGTAACAAGCAATGGGATAACTGGCATAGGACATTCCTGCGTACAAAATTGACGCTTCTTCGGATTAAGTGAAGAGTATATAACGGAACGAACAATTTTACTGTTTTTGCACTCATATATAAAGCAGTTAAGCACTCCTTTCATCTCAATTCCGTTGTTTCATCCCGAACGAATTCAATGCAACTTTTTAATCT

Coding sequences of Glyma.06g116000

Limit To All Plant Sequences

>Glyma.06g116000.1 sequence-type=CDS polypeptide=Glyma.06g116000.1.p locus=Glyma.06g116000 ID=Glyma.06g116000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGCCAATCCTGCAGAGCTCTCAGCCATGGGTCGAGAAATACCGGCCAAAGCAAGTGAAAGATGTTGCCCACCAAGATGAAGTTGTTCGAGTACTAACAAACACCCTTGAAACTGGAAGTTGCCCCCACATGCTCTTCTATGGTCCTCCTGGCACGGGAAAAACAACTACTGCCCTTGCTATCGCCCATCAGCTTTTTGGTCCTGAGCTATATAAGTCTAGGGTGCTGGAGTTGAATGCAAGTGACGATAGAGGGATTAATGTTGTTCGAACAAAGATAAAAGATTTTGCTGCTGTTGCTGTTGGTACTAATCAGTGTAAAAATGGTTATCCTTGTCCACCATTTAAGATTATTGTTCTAGACGAGGCAGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGGCGTACAATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTATGTTAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAACCATTATCAGAAGAAATCATGAGCAGCCGGATATTATACATCTCCCAAGAAGAGGGACTCTGTCTTGATGCTGAGGCTCTTTCAACCCTGAGTTTTATTTCTCATGGAGATCTTCGCCGGGCAATCACATACTTGCAGTCTGCAGCTCGCTTATTTGGATCTTCAATTTCTTCAGAGAATCTGATTTCTGTGTCAGGGGTTGTTCCGGCAAAGGTTGTGGAGGCACTTCTTAAAGCTTGCAAAAGTGGTAATTTTGATTTGGCAAACAAGGAAGTCAACAATTTCATTGCAGAGGGATATCCAGCTTCTCAGATGCTTACTCAGTTATTTGAGGCCATTGTTGAAGAAAATGACTTATCTGATGAACAGAAAGCAAGAATATCAAAGAAGCTGGGTGAAGCTGATAAGTGCTTAGTTGACGGTGCTGATGAATACTTGCAACTTCTTGATGTGGTCAGCAATACGATTAAAGCTTTTAACAGCTTGCCAGAAGCATTTGCTTACGAATGTTAG

>Glyma.06g116000.2 sequence-type=CDS polypeptide=Glyma.06g116000.2.p locus=Glyma.06g116000 ID=Glyma.06g116000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGCCAATCCTGCAGAGCTCTCAGCCATGGGTCGAGAAATACCGGCCAAAGCAAGTGAAAGATGTTGCCCACCAAGATGAAGTTGTTCGAGTACTAACAAACACCCTTGAAACTGGAAGTTGCCCCCACATGCTCTTCTATGGTCCTCCTGGCACGGGAAAAACAACTACTGCCCTTGCTATCGCCCATCAGCTTTTTGGTCCTGAGCTATATAAGTCTAGGGTGCTGGAGTTGAATGCAAGTGACGATAGAGGGATTAATGTTGTTCGAACAAAGATAAAAGATTTTGCTGCTGTTGCTGTTGGTACTAATCAGTGTAAAAATGGTTATCCTTGTCCACCATTTAAGATTATTGTTCTAGACGAGGCAGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGGCGTACAATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTATGTTAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAACCATTATCAGAAGAAATCATGAGCAGCCGGATATTATACATCTCCCAAGAAGAGGGACTCTGTCTTGATGCTGAGGCTCTTTCAACCCTGAGTTTTATTTCTCATGGAGATCTTCGCCGGGCAATCACATACTTGCAGTCTGCAGCTCGCTTATTTGGATCTTCAATTTCTTCAGAGAATCTGATTTCTGTGTCAGGGGTTGTTCCGGCAAAGGTTGTGGAGGCACTTCTTAAAGCTTGCAAAAGTGGTAATTTTGATTTGGCAAACAAGGAAGTCAACAATTTCATTGCAGAGGGATATCCAGCTTCTCAGATGCTTACTCAGAAAGCAAGAATATCAAAGAAGCTGGGTGAAGCTGATAAGTGCTTAGTTGACGGTGCTGATGAATACTTGCAACTTCTTGATGTGGTCAGCAATACGATTAAAGCTTTTAACAGCTTGCCAGAAGCATTTGCTTACGAATGTTAG

>Glyma.06g116000.3 sequence-type=CDS polypeptide=Glyma.06g116000.3.p locus=Glyma.06g116000 ID=Glyma.06g116000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGCCAATCCTGCAGAGCTCTCAGCCATGGGTCGAGAAATACCGGCCAAAGCAAGTGAAAGATGTTGCCCACCAAGATGAAGTTGTTCGAGTACTAACAAACACCCTTGAAACTGGAAGTTGCCCCCACATGCTCTTCTATGGTCCTCCTGGCACGGGAAAAACAACTACTGCCCTTGCTATCGCCCATCAGCTTTTTGGTCCTGAGCTATATAAGTCTAGGGTGCTGGAGTTGAATGCAAGTGACGATAGAGGGATTAATGTTGTTCGAACAAAGATAAAAGATTTTGCTGCTGTTGCTGTTGGTACTAATCAGTGTAAAAATGGTTATCCTTGTCCACCATTTAAGATTATTGTTCTAGACGAGGCAGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGGCGTACAATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTATGTTAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAACCATTATCAGAAGAAATCATGAGCAGCCGGATATTATACATCTCCCAAGAAGAGGGACTCTGTCTTGATGCTGAGGCTCTTTCAACCCTGAGTTTTATTTCTCATGGAGATCTTCGCCGGGCAATCACATACTTGCAGTCTGCAGCTCGCTTATTTGGATCTTCAATTTCTTCAGAGAATCTGATTTCTGTGTCAGGGGTTGTTCCGGCAAAGGTTGTGGAGGCACTTCTTAAAGCTTGCAAAAGTGGTAATTTTGATTTGGCAAACAAGGAAGTCAACAATTTCATTGCAGAGGGATATCCAGCTTCTCAGATGCTTACTCAGTTATTTGAGGCCATTGTTGAAGAAAATGACTTATCTGATGAACAGAAAGCAAGAATATCAAAGAAGCTGGGTGAAGCTGATAAGGTGCTCTTAACCCCCCCCAACACACACACACACCCATTTGTTTCTTCTGTGCTTAGTTGA

Predicted protein sequences of Glyma.06g116000

Limit To All Plant Sequences

>Glyma.06g116000.1.p sequence-type=predicted peptide transcript=Glyma.06g116000.1 locus=Glyma.06g116000 ID=Glyma.06g116000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPILQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEALSTLSFISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPAKVVEALLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKCLVDGADEYLQLLDVVSNTIKAFNSLPEAFAYEC*

>Glyma.06g116000.2.p sequence-type=predicted peptide transcript=Glyma.06g116000.2 locus=Glyma.06g116000 ID=Glyma.06g116000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPILQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEALSTLSFISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPAKVVEALLKACKSGNFDLANKEVNNFIAEGYPASQMLTQKARISKKLGEADKCLVDGADEYLQLLDVVSNTIKAFNSLPEAFAYEC*

>Glyma.06g116000.3.p sequence-type=predicted peptide transcript=Glyma.06g116000.3 locus=Glyma.06g116000 ID=Glyma.06g116000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPILQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEALSTLSFISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPAKVVEALLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKVLLTPPNTHTHPFVSSVLS*

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