SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.06g115500): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.06g115500): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.06g115500

Feature Type:gene_model
Chromosome:Gm06
Start:9402049
stop:9404028
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g115500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G21710.1AT 8-oxoguanine-DNA glycosylase 1 JGI N/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006284GO-bp base-excision repair EnsemblGenomesN/AIEA
GO:0006284GO-bp base-excision repair JGI N/AIEA
GO:0006289GO-bp nucleotide-excision repair EnsemblGenomesN/AIEA
GO:0006289GO-bp nucleotide-excision repair JGI N/AIEA
GO:0003684GO-mf damaged DNA binding EnsemblGenomesN/AIEA
GO:0003684GO-mf damaged DNA binding JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0008534GO-mf oxidized purine nucleobase lesion DNA N-glycosylase activity EnsemblGenomesN/AIEA
GO:0008534GO-mf oxidized purine nucleobase lesion DNA N-glycosylase activity JGI N/AIEA
GO:0019104GO-mf DNA N-glycosylase activity EnsemblGenomesN/AIEA
KOG2875 KOG 8-oxoguanine DNA glycosylase JGI N/AIEA
PTHR10242Panther N-GLYCOSYLASE/DNA LYASE JGI N/AIEA
PF00730PFAM HhH-GPD superfamily base excision DNA repair protein JGI N/AIEA
PF07934PFAM 8-oxoguanine DNA glycosylase, N-terminal domain JGI N/AIEA

Expression Patterns of Glyma.06g115500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g115500 not represented in the dataset
Glyma.06g115500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g115500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g12160 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g115500
>Glyma.06g115500.2 sequence-type=transcript locus=Glyma.06g115500 ID=Glyma.06g115500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTAAACTACTGATAAAAAAAACAATGTTTCATCATTCCCCGATCCGACCCGTTACGCTGTCCCTTCCTCCAGACCTGATATGGCCACATGAATGAAGTCGTTGCATTTGAGAACCATCATCCAGTTCCCGGCGATGACGAACAAGAGAAAAAGATCCCAGAAACATACCCCACCACCTCCTCCTCCCTCAACACCCCCAACTCCACAAACCCAAGCCCGCCACTCCCTCAACACCGCAAAAGCCCGGGCCTGGGCCCCTCTCAGCCTCACCCGCCACGAACTCTCCTTACCCCTCACCTTCCCCACGGGCCAAACCTTCCTCTGGAAAAACACCGCCCCTTCACAATACACCGGAGTCGTCGGGCCCCACCTCATTTCCCTCAAGCACCTCCAAAACGGCGACGTTTCCTACTGCCTCCACTCCCCCTCCCACTCCGACACCGCCGAAACTGCCCTGCTTGACTTCCTAAATGCCACCGTTTCGCTCGCCGACTTATGGAAGACGTTTTCCGCTTCCGACGCAAGGTTCGCCGAGCTCGCGCACCACTTAAGCGGCGCCCGAGTCCTCCGGCAAGACCCTTTCGAGTGTTTGATTCAGTTTCTGTGCTCTTCTAATAACAACATCGGAAGAATCACGAAAATGGTGAATTACGTGTCCTCCCTGGGAACTCACGTGGGAGACGTTGGAGAGTTTCAGTTCCACGCTTTCCCTTCTTTGGAACAACTTTCCTCCGTCTCAGAGCAACAACTCAGAGACGCCGGTTTCGGTTACAGGGCTAAATATATAATTGGTACGATTAATGCATTGAAATCAAAACCCGGTGGAGGCGAAGAATGGCTTCGTTCTCTTCGTAAGATGGAGCTTCGAGATGTTATATCTGCACTTTGTACGTTACCCGGTGTGGGTCCTAAAGTGGCTGCTTGCATTGCTCTCTTTTCGCTTGATCAGCACCATGCTGTTCCTGTTGACACACACGTGTGGCGGGTTCCCAGTTGACACCCAAGCTCTGCGATCGTGTTGCAGAGGCGTTTGTAACCAAATATGGTAAATATGCTGGCTGGGCGCAGACTCTATTGTTCATAGCTGAATTACCCTCACAAAAAGCCCTCCTACCTTCACATTTGTTGACTGTTAAACAACGCAATGCTGCAAAGATAGAAGGCAGCGAAGAAGAAGTTGATTGAGATCTACAGTTGGTGTGGTTCTCATGATATAAATGGACAAGATGTAGGTGTGACATGCTGTTGCCAAGAATTCATTAAGTAGAACATGGTGATATCACGCTGGTTATTCTATTACTCGCACTGTTGATTGCTCTTCATTTGGCTTTTATTTTTGTTCTCTGCATTTTATTAGCTTTGATTAATCTATTGTAAGTTGTAACCAATAGTTTACAGCTTTCTTCTTCATTAGAAAAGAAAAAGAAAAGAAAGATGTATTTTTCCCCATGTTATTTGACTTGGAGTTTTACTTTCCCTGTAAATAATTACTTCACCTAATTTGTTATTTACTTTTTAGCTCCTGCTGATAAAAGTACTTATCTTTTGCTCATTTGGTTCTTATTATATGTGTAATGATCACATTATCTGTTTGAACATGTTCTTTTTTTTTGTTTA
Coding sequences of Glyma.06g115500
>Glyma.06g115500.1 sequence-type=CDS polypeptide=Glyma.06g115500.1.p locus=Glyma.06g115500 ID=Glyma.06g115500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGTCGTTGCATTTGAGAACCATCATCCAGTTCCCGGCGATGACGAACAAGAGAAAAAGATCCCAGAAACATACCCCACCACCTCCTCCTCCCTCAACACCCCCAACTCCACAAACCCAAGCCCGCCACTCCCTCAACACCGCAAAAGCCCGGGCCTGGGCCCCTCTCAGCCTCACCCGCCACGAACTCTCCTTACCCCTCACCTTCCCCACGGGCCAAACCTTCCTCTGGAAAAACACCGCCCCTTCACAATACACCGGAGTCGTCGGGCCCCACCTCATTTCCCTCAAGCACCTCCAAAACGGCGACGTTTCCTACTGCCTCCACTCCCCCTCCCACTCCGACACCGCCGAAACTGCCCTGCTTGACTTCCTAAATGCCACCGTTTCGCTCGCCGACTTATGGAAGACGTTTTCCGCTTCCGACGCAAGGTTCGCCGAGCTCGCGCACCACTTAAGCGGCGCCCGAGTCCTCCGGCAAGACCCTTTCGAGTGTTTGATTCAGTTTCTGTGCTCTTCTAATAACAACATCGGAAGAATCACGAAAATGGTGAATTACGTGTCCTCCCTGGGAACTCACGTGGGAGACGTTGGAGAGTTTCAGTTCCACGCTTTCCCTTCTTTGGAACAACTTTCCTCCGTCTCAGAGCAACAACTCAGAGACGCCGGTTTCGGTTACAGGGCTAAATATATAATTGGTACGATTAATGCATTGAAATCAAAACCCGGTGGAGGCGAAGAATGGCTTCGTTCTCTTCGTAAGATGGAGCTTCGAGATGTTATATCTGCACTTTGTACGTTACCCGGTGTGGGTCCTAAAGTGGCTGCTTGCATTGCTCTCTTTTCGCTTGATCAGCACCATGCTGTTCCTGTTGACACACACGTGTGGCGGATTGCCACCAAGTATCTCTTACCTGAGCTTGCAGGTTCCCAGTTGACACCCAAGCTCTGCGATCGTGTTGCAGAGGCGTTTGTAACCAAATATGGTAAATATGCTGGCTGGGCGCAGACTCTATTGTTCATAGCTGAATTACCCTCACAAAAAGCCCTCCTACCTTCACATTTGTTGACTGTTAAACAACGCAATGCTGCAAAGATAGAAGGCAGCGAAGAAGAAGTTGATTGA

>Glyma.06g115500.2 sequence-type=CDS polypeptide=Glyma.06g115500.2.p locus=Glyma.06g115500 ID=Glyma.06g115500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGTCGTTGCATTTGAGAACCATCATCCAGTTCCCGGCGATGACGAACAAGAGAAAAAGATCCCAGAAACATACCCCACCACCTCCTCCTCCCTCAACACCCCCAACTCCACAAACCCAAGCCCGCCACTCCCTCAACACCGCAAAAGCCCGGGCCTGGGCCCCTCTCAGCCTCACCCGCCACGAACTCTCCTTACCCCTCACCTTCCCCACGGGCCAAACCTTCCTCTGGAAAAACACCGCCCCTTCACAATACACCGGAGTCGTCGGGCCCCACCTCATTTCCCTCAAGCACCTCCAAAACGGCGACGTTTCCTACTGCCTCCACTCCCCCTCCCACTCCGACACCGCCGAAACTGCCCTGCTTGACTTCCTAAATGCCACCGTTTCGCTCGCCGACTTATGGAAGACGTTTTCCGCTTCCGACGCAAGGTTCGCCGAGCTCGCGCACCACTTAAGCGGCGCCCGAGTCCTCCGGCAAGACCCTTTCGAGTGTTTGATTCAGTTTCTGTGCTCTTCTAATAACAACATCGGAAGAATCACGAAAATGGTGAATTACGTGTCCTCCCTGGGAACTCACGTGGGAGACGTTGGAGAGTTTCAGTTCCACGCTTTCCCTTCTTTGGAACAACTTTCCTCCGTCTCAGAGCAACAACTCAGAGACGCCGGTTTCGGTTACAGGGCTAAATATATAATTGGTACGATTAATGCATTGAAATCAAAACCCGGTGGAGGCGAAGAATGGCTTCGTTCTCTTCGTAAGATGGAGCTTCGAGATGTTATATCTGCACTTTGTACGTTACCCGGTGTGGGTCCTAAAGTGGCTGCTTGCATTGCTCTCTTTTCGCTTGATCAGCACCATGCTGTTCCTGTTGACACACACGTGTGGCGGGTTCCCAGTTGA
Predicted protein sequences of Glyma.06g115500
>Glyma.06g115500.1.p sequence-type=predicted peptide transcript=Glyma.06g115500.1 locus=Glyma.06g115500 ID=Glyma.06g115500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKSLHLRTIIQFPAMTNKRKRSQKHTPPPPPPSTPPTPQTQARHSLNTAKARAWAPLSLTRHELSLPLTFPTGQTFLWKNTAPSQYTGVVGPHLISLKHLQNGDVSYCLHSPSHSDTAETALLDFLNATVSLADLWKTFSASDARFAELAHHLSGARVLRQDPFECLIQFLCSSNNNIGRITKMVNYVSSLGTHVGDVGEFQFHAFPSLEQLSSVSEQQLRDAGFGYRAKYIIGTINALKSKPGGGEEWLRSLRKMELRDVISALCTLPGVGPKVAACIALFSLDQHHAVPVDTHVWRIATKYLLPELAGSQLTPKLCDRVAEAFVTKYGKYAGWAQTLLFIAELPSQKALLPSHLLTVKQRNAAKIEGSEEEVD*

>Glyma.06g115500.2.p sequence-type=predicted peptide transcript=Glyma.06g115500.2 locus=Glyma.06g115500 ID=Glyma.06g115500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKSLHLRTIIQFPAMTNKRKRSQKHTPPPPPPSTPPTPQTQARHSLNTAKARAWAPLSLTRHELSLPLTFPTGQTFLWKNTAPSQYTGVVGPHLISLKHLQNGDVSYCLHSPSHSDTAETALLDFLNATVSLADLWKTFSASDARFAELAHHLSGARVLRQDPFECLIQFLCSSNNNIGRITKMVNYVSSLGTHVGDVGEFQFHAFPSLEQLSSVSEQQLRDAGFGYRAKYIIGTINALKSKPGGGEEWLRSLRKMELRDVISALCTLPGVGPKVAACIALFSLDQHHAVPVDTHVWRVPS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo