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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G44170.1 | AT | aldehyde dehydrogenase 3H1 | JGI | N/A | IEA |
| GO:0006081 | GO-bp | cellular aldehyde metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0004030 | GO-mf | aldehyde dehydrogenase [NAD(P)+] activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0016620 | GO-mf | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | EnsemblGenomes | N/A | IEA |
| KOG2456 | KOG | Aldehyde dehydrogenase | JGI | N/A | IEA |
| PTHR11699 | Panther | ALDEHYDE DEHYDROGENASE-RELATED | JGI | N/A | IEA |
| PTHR11699:SF15 | Panther | ALDEHYDE DEHYDROGENASE TYPE III, ISOFORM O | JGI | N/A | IEA |
| PF00171 | PFAM | Aldehyde dehydrogenase family | JGI | N/A | IEA |
| PWY-2501 | SoyCyc9 | fatty acid α-oxidation I | Plant Metabolic Network | ISS | |
| PWY66-21 | SoyCyc9 | ethanol degradation II | Plant Metabolic Network | ISS | |
| GN7V-63267 | SoyCyc9-rxn | aldehyde dehydrogenase (NAD+) | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| ALDH3H2 | aldehyde dehydrogenase family 3 member H2 |
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Glyma.06g114300 not represented in the dataset |
Glyma.06g114300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.04g248500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma06g12010 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g114300.1 sequence-type=CDS polypeptide=Glyma.06g114300.1.p locus=Glyma.06g114300 ID=Glyma.06g114300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCGGTTGAGGAGATGCAGTCACAGAAGAGGAATGTGTTTGACGCAGAAACGGCGTCGTCCTTGGTGAAGGAGCTGAGGGACAACTTCGGTTCGGGAAGGACTCGGAGTTATGAATGGAGAGTGTCACAAGTGAAGGCTCTGTTGAAGGCGGTGGTTGATAACGAGGAACAGATCGTCGACGCTCTTCGTTCCGACCTAGCCAAGCCTCCACTCGAAACCATCGTCTACGAGGTTGGTATGTTTAAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAATGGATGAAGCCAGAAAAGGTCAAAACATCAATCAGAACTTTTCCTTCGTCAGCTGAAATAGTACCTGAACCACTGGGTGTTGTGTTGGTCATCTCTGCATGGAACTATCCAATTTTGTTGTCTCTTGATCCAGTCGTTGGAGCTATAGCTGCTGGGAATGCTGTGGTTCTAAAACCATCAGAAATTGCTCCTGCCTCATCATCATTATTATTAAAATTGATAGAGAAGTATTGTGATAACTCATTTATAAGAGTTGTGGAGGGGGCAGTTGATGAAACAACCGCACTATTGCAGCAAAAGTGGGACAAGATTTTCTACACAGGCAATGGAAAAGTGGGAAGAATAGTGATGACTGCTGCTGCAAAACACCTTACACCAGTTGTGCTGGAGCTTGGAGGAAAATCTCCTGTTGTTGTTGATTCCAATGTCGATTTGCAGATAGCAGCTAGGCGAATAATTTCTGGCAAGTGGGGATTGAATAATGGACAAGCCTGCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCAAGTTGGTGGATGCCCTAAAGACTGAATTGGAGAAATGTTATGGAAAGAACCCGTTGGAATCAGAAGATTTGTCTCGGATTGTGACTTCCAACCACTTTGCTCGATTGTCAAAGCTATTGGATGATGATAAGGTTGCTGGCAAGATTGTTTATGGAGGTGAAAAGGATGAAAAGAAATTAAGGATTGCTCCCACTCTTTTATTGGATGTTCCGCGAGATTCTCTGATAATGGGTGAGGAGATATTTGGTCCATTACTTCCTATTATCACGGTGAATAAAGTGGAAGAAAGTATTGATTTGATCAACTCAGGAACAAAGCCCCTGGCTGCATATATATTTACAACCAACAAGAAGTTAAAGGAGCAGTTCGTAATGAATGTTCCTGCAGGGGGTTTGCTTGTCAATGACACTGTCTTACATCTTGTCGTTGATACTTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGTGCATACCATGGGAAGTTCTCTTTTGATGCTTTTACACACAAAAAGGCAGTTCTTTATCGCAGTTTTGCTGGTGATTCATCATTAAGGTACCCACCATACACGGATACAAAGCTGAGATTGATGAAGGCTCTCATCGGTGGTCGTTTCCTCGGAATAATTCGTGCTCTTTTCGGATGGTCCTAA
>Glyma.06g114300.1.p sequence-type=predicted peptide transcript=Glyma.06g114300.1 locus=Glyma.06g114300 ID=Glyma.06g114300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSVEEMQSQKRNVFDAETASSLVKELRDNFGSGRTRSYEWRVSQVKALLKAVVDNEEQIVDALRSDLAKPPLETIVYEVGMFKNSCEVILKELKQWMKPEKVKTSIRTFPSSAEIVPEPLGVVLVISAWNYPILLSLDPVVGAIAAGNAVVLKPSEIAPASSSLLLKLIEKYCDNSFIRVVEGAVDETTALLQQKWDKIFYTGNGKVGRIVMTAAAKHLTPVVLELGGKSPVVVDSNVDLQIAARRIISGKWGLNNGQACISPDYVITTKDCAPKLVDALKTELEKCYGKNPLESEDLSRIVTSNHFARLSKLLDDDKVAGKIVYGGEKDEKKLRIAPTLLLDVPRDSLIMGEEIFGPLLPIITVNKVEESIDLINSGTKPLAAYIFTTNKKLKEQFVMNVPAGGLLVNDTVLHLVVDTLPFGGVGESGMGAYHGKFSFDAFTHKKAVLYRSFAGDSSLRYPPYTDTKLRLMKALIGGRFLGIIRALFGWS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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