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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G77670.1 | AT | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | JGI | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | JGI | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0030170 | GO-mf | pyridoxal phosphate binding | EnsemblGenomes | N/A | IEA |
| GO:0030170 | GO-mf | pyridoxal phosphate binding | JGI | N/A | IEA |
| KOG0257 | KOG | Kynurenine aminotransferase, glutamine transaminase K | JGI | N/A | IEA |
| PTHR11751 | Panther | SUBGROUP I AMINOTRANSFERASE RELATED | JGI | N/A | IEA |
| PTHR11751:SF125 | Panther | JGI | N/A | IEA | |
| PF00155 | PFAM | Aminotransferase class I and II | JGI | N/A | IEA |
| PWY-4361 | SoyCyc9 | S-methyl-5-thio-α-D-ribose 1-phosphate degradation | Plant Metabolic Network | ISS | |
| PWY-7270 | SoyCyc9 | L-methionine salvage cycle II (plants) | Plant Metabolic Network | ISS | |
| PWY-7528 | SoyCyc9 | L-methionine salvage cycle I (bacteria and plants) | Plant Metabolic Network | ISS | |
| GN7V-50389 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
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Glyma.06g110900 not represented in the dataset |
Glyma.06g110900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma06g11625 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g110900.1 sequence-type=CDS polypeptide=Glyma.06g110900.1.p locus=Glyma.06g110900 ID=Glyma.06g110900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCGACTGTTTCCACTGAAAATGAGGCCACAATCCAGAAAACGCATTATCCTTTGCAGGTTGCGAAGCGCTTAGAGAAGTTCCAAAGAGATTGGGGAGGTGCAACCAACCAGAAAGATGGAATCATAAACCTTGGACGAGGCTTTCCCAACTTTGATGGTCCAGAATTTATAAAGGAAGCAGCAATTCAGGCCATCAGAGATGGGAAAAATCAGTATGCACGAGGTTTTGGAGTTCCAGAACTGAACATTGCTATTGCTGATAGATTTAAGAAGGATACTGGAATAGTGGTAGACCCTGATAAGGAAGTTACTGTTATCCTGTTTACTCCTTTATATGATTGTTATGAAGCCAATTTAACCATGGCTGGTGCAAAAATAAAAAGCATCTCTTTGCACCCTCCAGATTTTGCTGTCCCAATTGAAAAATTGAAGTCCATCGTGTCAAGTAATACACGTGCCATTCTTATAAATACTCCTCACAACCCTACTGGAAAGATGTTCACTTTGGAAGAGCTCAATGCTATTGCATCACTTTGCATTGAGAATGATGTTCTAGTTTTTGCTGATGAGGTTTATCACAAGTTGGCATTTGATGTGGAGCACATTTCAATAGCTTCTTTGCCTGGAATGTTTGAAAGGACAGTGACAATGAACTCAATGGCAAAGACATTCAACTTAACAGGATGGAAGATTGGTTGGGCCATAGCACCCTCACACTTATCATGGGGAGTGCGACAGGCACACGCTTTCGTTACTTTTTCGAGCCCCAATGCTCTGCAGTGTGCTGCTGCAGTAGCTCTTAGAGCACCAGACTCTTACTATGTAGAGCTGAAGAGGGATTATATAGCTAAGAGGGCTATTTTGGTGGAAGGATTAAAGGCCGTTGGCTTTAAGGTATTCCCACCCAATGGAACATTCTTTGTGTTAGCAGATCACACCCATTTTGGAATGGAAAATGATGTTGCATTTTGTAAATATCTGCATAAGGAGGTGGGGGTGGTGGCAATCCCTTGCAGTGTGTTTTGCTTGAATCCAGAAGAGGGAAAGAATCTAGTCAGATTTGTTTTCTGCAAGGATGAGGAAACTCTTAGGGCCGCGGTTGAGAGGATGAAGGAGAAGCTTTGA
>Glyma.06g110900.1.p sequence-type=predicted peptide transcript=Glyma.06g110900.1 locus=Glyma.06g110900 ID=Glyma.06g110900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSTVSTENEATIQKTHYPLQVAKRLEKFQRDWGGATNQKDGIINLGRGFPNFDGPEFIKEAAIQAIRDGKNQYARGFGVPELNIAIADRFKKDTGIVVDPDKEVTVILFTPLYDCYEANLTMAGAKIKSISLHPPDFAVPIEKLKSIVSSNTRAILINTPHNPTGKMFTLEELNAIASLCIENDVLVFADEVYHKLAFDVEHISIASLPGMFERTVTMNSMAKTFNLTGWKIGWAIAPSHLSWGVRQAHAFVTFSSPNALQCAAAVALRAPDSYYVELKRDYIAKRAILVEGLKAVGFKVFPPNGTFFVLADHTHFGMENDVAFCKYLHKEVGVVAIPCSVFCLNPEEGKNLVRFVFCKDEETLRAAVERMKEKL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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