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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT2G25710.1 | AT | holocarboxylase synthase 1 | JGI | N/A | IEA |
GO:0006464 | GO-bp | cellular protein modification process | EnsemblGenomes | N/A | IEA |
GO:0006464 | GO-bp | cellular protein modification process | JGI | N/A | IEA |
GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
GO:0004077 | GO-mf | biotin-[acetyl-CoA-carboxylase] ligase activity | EnsemblGenomes | N/A | IEA |
PTHR12835 | Panther | BIOTIN PROTEIN LIGASE | JGI | N/A | IEA |
PF02237 | PFAM | Biotin protein ligase C terminal domain | JGI | N/A | IEA |
PF03099 | PFAM | Biotin/lipoate A/B protein ligase family | JGI | N/A | IEA |
PWY0-1264 | SoyCyc9 | biotin-carboxyl carrier protein assembly | Plant Metabolic Network | ISS | |
GN7V-49734 | SoyCyc9-rxn | biotin-[methylcrotonoyl-CoA-carboxylase] ligase | Plant Metabolic Network | ISS |
Glyma.06g109600 not represented in the dataset |
Glyma.06g109600 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.04g252900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma06g11480 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g109600.2 sequence-type=transcript locus=Glyma.06g109600 ID=Glyma.06g109600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 TTTTGATGACTCAATTGCAAAAAAAACAAAAACCTATAATAATCGGTCACGGAATGGAACCACCTTGTTTTTCCCGACCTAGATAACGCTTTTTTGAAGTCGGAGAATAAACGTTGATGCTGTTGCGCAACCCTGCGTTGACAGCGTCGCTGCTGTCAGCCACCACAAAGAAGCTCTGCAACCACCGTTGTTCTACACCTGCTGCATTAATGGCATCTTCAGGTGTGGCGTGCAGTTTGCTGGTTTTGTGTGGCAAATCACTGGCAGAGAATGAAACTGCTAAAGCTATAAAGACCAGTAGCACACTGAAGCTTCCCGAGGATGAAAAACTCTCGCTCGTTTTGCATTCGGAGATGGATAATTCTGTTATGCAAGGCTTTTTCCAAGTTCATTCCTACATGGATTCTCTTTCCACCAATCAATTTGGCAGGCTTCTCATTTGGTCTCCAGACTTAAATTCAACGCACGATATCGTTTCTCACAACTTTTGTGAGCTTCCCATTGGTACAGTTTCCATTGCTGATGTTCAGACCAAGGGACGAGGTCGGTCGAAGAATGTCTGGGAGTCTCCATTAGGTTGCCTCATGTTTTCTTTTACTATGCAAATGGAGGATGGACGAGTCGTTCCTTTGGTTCAGTATGTGGTTTCCCTTGCTATGACAGAGGCAATCAAGGATATCTGTGACAAAAATGGGTTACCCAGCATAGATGTTAGAATCAAGTGGCCAAATGATCTTTACTTAAATGGCTGTAAAGTTGGAGGCATTCTTTGTACCTCGACATATAAATCAAAGAAGTTCAATGTTAGTGCAGGATTTCAAACCCTAGAGGAGCTTTATATCAAGACATGGTTGCACAGTGGACAGAGAGTTGTTGTACAGGAGAAGAATGAGGACAAAGTGATCGAACATGTGGTAACTATTCAGGGGTTGACATCCTCGGGATATTTGCTGGCTGTCGGTGATGACAATCATATGTGTGAGCTCCACCCTGATGGTAATAGCTTTGACTTTTTCAAAGGACTGGTCAGAAGGAAACTCCAGTGAACAAGATTCCTTGACACATCTCACAAGAGGCAACAACAACTCTTACGCACTTTGTATATAATACGCAGGCTTTGGCTTCAGAGCTAAGAATTTTCCAATAAATATAAGCTTTTGGCTTCAGTGCTAAGAACTTTCCAATAAACATCATATTTGTTAAATACATTTTGTCATTAGAAATTTCAGGGCTTTTGTATTCCATTTGTGAATTTCCGTCAAACTTGCAATCCCTTTCCTTGTCCGGTCAAACAAGATCTTCTATACATCATGGCACTTAAAAAACATCATGCAGTTGCAACCAAAATAATTACGGATTTTTTTCCTCTTGATTGGACCTAGTTCATGATTGCTTTACTCAATCATTTGTAAGGAGTATTGTGGTCCTTCTTAGCCAGCTATGAAATGATTTG
>Glyma.06g109600.1 sequence-type=CDS polypeptide=Glyma.06g109600.1.p locus=Glyma.06g109600 ID=Glyma.06g109600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCTGTTGCGCAACCCTGCGTTGACAGCGTCGCTGCTGTCAGCCACCACAAAGAAGCTCTGCAACCACCGTTGTTCTACACCTGCTGCATTAATGGCATCTTCAGGTGTGGCGTGCAGTTTGCTGGTTTTGTGTGGCAAATCACTGGCAGAGAATGAAACTGCTAAAGCTATAAAGACCAGTAGCACACTGAAGCTTCCCGAGGATGAAAAACTCTCGCTCGTTTTGCATTCGGAGATGGATAATTCTGTTATGCAAGGCTTTTTCCAAGTTCATTCCTACATGGATTCTCTTTCCACCAATCAATTTGGCAGGCTTCTCATTTGGTCTCCAGACTTAAATTCAACGCACGATATCGTTTCTCACAACTTTTGTGAGCTTCCCATTGGTACAGTTTCCATTGCTGATGTTCAGACCAAGGGACGAGGTCGGTCGAAGAATGTCTGGGAGTCTCCATTAGGTTGCCTCATGTTTTCTTTTACTATGCAAATGGAGGATGGACGAGTCGTTCCTTTGGTTCAGTATGTGGTTTCCCTTGCTATGACAGAGGCAATCAAGGATATCTGTGACAAAAATGGGTTACCCAGCATAGATGTTAGAATCAAGTGGCCAAATGATCTTTACTTAAATGGCTGTAAAGTTGGAGGCATTCTTTGTACCTCGACATATAAATCAAAGAAGTTCAATGTTAGTGCAGGAATAGGCTTGAATGTCAATAATAAGAACCCAACAACATCCTTAAATACAATTCTAAAAGGGTTCTATACAGGAGCTTACCAATTTCAAAGAGAAGATGTTCTAGCAGCCTTTTTTAACAAATTTGAGAAATTTTATGATTTATTTGTGAATCAAGGATTTCAAACCCTAGAGGAGCTTTATATCAAGACATGGTTGCACAGTGGACAGAGAGTTGTTGTACAGGAGAAGAATGAGGACAAAGTGATCGAACATGTGGTAACTATTCAGGGGTTGACATCCTCGGGATATTTGCTGGCTGTCGGTGATGACAATCATATGTGTGAGCTCCACCCTGATGGTAATAGCTTTGACTTTTTCAAAGGACTGGTCAGAAGGAAACTCCAGTGA >Glyma.06g109600.2 sequence-type=CDS polypeptide=Glyma.06g109600.2.p locus=Glyma.06g109600 ID=Glyma.06g109600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCTGTTGCGCAACCCTGCGTTGACAGCGTCGCTGCTGTCAGCCACCACAAAGAAGCTCTGCAACCACCGTTGTTCTACACCTGCTGCATTAATGGCATCTTCAGGTGTGGCGTGCAGTTTGCTGGTTTTGTGTGGCAAATCACTGGCAGAGAATGAAACTGCTAAAGCTATAAAGACCAGTAGCACACTGAAGCTTCCCGAGGATGAAAAACTCTCGCTCGTTTTGCATTCGGAGATGGATAATTCTGTTATGCAAGGCTTTTTCCAAGTTCATTCCTACATGGATTCTCTTTCCACCAATCAATTTGGCAGGCTTCTCATTTGGTCTCCAGACTTAAATTCAACGCACGATATCGTTTCTCACAACTTTTGTGAGCTTCCCATTGGTACAGTTTCCATTGCTGATGTTCAGACCAAGGGACGAGGTCGGTCGAAGAATGTCTGGGAGTCTCCATTAGGTTGCCTCATGTTTTCTTTTACTATGCAAATGGAGGATGGACGAGTCGTTCCTTTGGTTCAGTATGTGGTTTCCCTTGCTATGACAGAGGCAATCAAGGATATCTGTGACAAAAATGGGTTACCCAGCATAGATGTTAGAATCAAGTGGCCAAATGATCTTTACTTAAATGGCTGTAAAGTTGGAGGCATTCTTTGTACCTCGACATATAAATCAAAGAAGTTCAATGTTAGTGCAGGATTTCAAACCCTAGAGGAGCTTTATATCAAGACATGGTTGCACAGTGGACAGAGAGTTGTTGTACAGGAGAAGAATGAGGACAAAGTGATCGAACATGTGGTAACTATTCAGGGGTTGACATCCTCGGGATATTTGCTGGCTGTCGGTGATGACAATCATATGTGTGAGCTCCACCCTGATGGTAATAGCTTTGACTTTTTCAAAGGACTGGTCAGAAGGAAACTCCAGTGA
>Glyma.06g109600.1.p sequence-type=predicted peptide transcript=Glyma.06g109600.1 locus=Glyma.06g109600 ID=Glyma.06g109600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLLRNPALTASLLSATTKKLCNHRCSTPAALMASSGVACSLLVLCGKSLAENETAKAIKTSSTLKLPEDEKLSLVLHSEMDNSVMQGFFQVHSYMDSLSTNQFGRLLIWSPDLNSTHDIVSHNFCELPIGTVSIADVQTKGRGRSKNVWESPLGCLMFSFTMQMEDGRVVPLVQYVVSLAMTEAIKDICDKNGLPSIDVRIKWPNDLYLNGCKVGGILCTSTYKSKKFNVSAGIGLNVNNKNPTTSLNTILKGFYTGAYQFQREDVLAAFFNKFEKFYDLFVNQGFQTLEELYIKTWLHSGQRVVVQEKNEDKVIEHVVTIQGLTSSGYLLAVGDDNHMCELHPDGNSFDFFKGLVRRKLQ* >Glyma.06g109600.2.p sequence-type=predicted peptide transcript=Glyma.06g109600.2 locus=Glyma.06g109600 ID=Glyma.06g109600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLLRNPALTASLLSATTKKLCNHRCSTPAALMASSGVACSLLVLCGKSLAENETAKAIKTSSTLKLPEDEKLSLVLHSEMDNSVMQGFFQVHSYMDSLSTNQFGRLLIWSPDLNSTHDIVSHNFCELPIGTVSIADVQTKGRGRSKNVWESPLGCLMFSFTMQMEDGRVVPLVQYVVSLAMTEAIKDICDKNGLPSIDVRIKWPNDLYLNGCKVGGILCTSTYKSKKFNVSAGFQTLEELYIKTWLHSGQRVVVQEKNEDKVIEHVVTIQGLTSSGYLLAVGDDNHMCELHPDGNSFDFFKGLVRRKLQ*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||