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Report for Sequence Feature Glyma.06g108000

Feature Type:gene_model
Chromosome:Gm06
Start:8672566
stop:8676246
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g108000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G36390.1AT Co-chaperone GrpE family protein JGI N/AIEA
GO:0006457GO-bp protein folding EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding JGI N/AIEA
GO:0050790GO-bp regulation of catalytic activity EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0005759GO-cc mitochondrial matrix EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009570GO-cc chloroplast stroma EnsemblGenomesN/AIEA
GO:0000774GO-mf adenyl-nucleotide exchange factor activity EnsemblGenomesN/AIEA
GO:0000774GO-mf adenyl-nucleotide exchange factor activity JGI N/AIEA
GO:0005507GO-mf copper ion binding EnsemblGenomesN/AIEA
GO:0042803GO-mf protein homodimerization activity EnsemblGenomesN/AIEA
GO:0042803GO-mf protein homodimerization activity JGI N/AIEA
GO:0051082GO-mf unfolded protein binding EnsemblGenomesN/AIEA
GO:0051087GO-mf chaperone binding EnsemblGenomesN/AIEA
GO:0051087GO-mf chaperone binding JGI N/AIEA
PTHR21237Panther GRPE PROTEIN JGI N/AIEA
PTHR21237:SF4Panther GRPE PROTEIN HOMOLOG JGI N/AIEA
PF01025PFAM GrpE JGI N/AIEA

Expression Patterns of Glyma.06g108000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g108000 not represented in the dataset
Glyma.06g108000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g108000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g11310 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g108000
>Glyma.06g108000.1 sequence-type=CDS polypeptide=Glyma.06g108000.1.p locus=Glyma.06g108000 ID=Glyma.06g108000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACTTTTCTTTCCAACCAATCTCTGTTGGGTTCTTGTCCTTGTTCTACTCCCTTCTCTTCAAAGCCCTTTCAAACCCTAAAACCCCAAATCTTATCTTTTCCATCTCGCGGGTTTCCGCGCCCCCTAATTTCCTCAGTCAATCGAAGAACCCAATTGAAGTCTTCCCAAGATTTCCCTCCAACTACAAATGATGAAACAGAGGAGACCCAGAATGATGTAAGAGGGACAAATGATGATGAAGATAAAAAACAAGTACCTAGTTTAATGATCCTCCTTGAAGCATACAAGGAAGCCTTTTTTAATGGCGACCAAAATACCGTAGCTCAGATTGAAGAGGGGATATATTCAATAGCAAATAGGAAAAATAAATTGATTCAGAAATTATCAAGTTTATCGGCAGACAAAGCTGCTTCCAAGAAGAGTTATCTTCGTTTACAAGCTGATTTTGATAATTTTAGGAAAAGGACTGACAAAGAGAGACTTAACATCCAATCCGATGCCCAGCAACAAGTCATTGAAAAGCTTTTGTTGATGGTCGACAATTTTGAGAGAACCCAACAGCAAATTAAAGCAGCAACAGAGAAAGAGAAGAAAATTGGTGTTAGCTATCAAGGTATTTACAAACAATTTGTAGAGGTTCTGAGGAATCATAATGTTTCAGTGGTAGCAACAGTGGGCAAGCCGTTTAATCCCTTGCAACATGAAGCCGTTGCACGTGAGGAGTCCACAGAGTTCAAAAAAGGGATTATAATTAAAGAATCCCGACGTGGTTTCTTGCTCAGAGATCGAGTTCTAAGGCCAGCCCTTGTCAAGGTTTCCTTAGGTCCTGGAAATAAGAAATCTCCCGTGTCTCCTGACAAGTCTGTGGAGCAACCTTCAACAGCTGCTGGAATAGATGAAAGATAG
Predicted protein sequences of Glyma.06g108000
>Glyma.06g108000.1.p sequence-type=predicted peptide transcript=Glyma.06g108000.1 locus=Glyma.06g108000 ID=Glyma.06g108000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATFLSNQSLLGSCPCSTPFSSKPFQTLKPQILSFPSRGFPRPLISSVNRRTQLKSSQDFPPTTNDETEETQNDVRGTNDDEDKKQVPSLMILLEAYKEAFFNGDQNTVAQIEEGIYSIANRKNKLIQKLSSLSADKAASKKSYLRLQADFDNFRKRTDKERLNIQSDAQQQVIEKLLLMVDNFERTQQQIKAATEKEKKIGVSYQGIYKQFVEVLRNHNVSVVATVGKPFNPLQHEAVAREESTEFKKGIIIKESRRGFLLRDRVLRPALVKVSLGPGNKKSPVSPDKSVEQPSTAAGIDER*






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