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Report for Sequence Feature Glyma.06g107100

Feature Type:gene_model
Chromosome:Gm06
Start:8610260
stop:8612719
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g107100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G36310.1AT S-adenosyl-L-methionine-dependent methyltransferases superfamily protein JGI N/AIEA
GO:0002098GO-bp tRNA wobble uridine modification EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0030488GO-bp tRNA methylation EnsemblGenomesN/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0000049GO-mf tRNA binding EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity JGI N/AIEA
GO:0008198GO-mf ferrous iron binding EnsemblGenomesN/AIEA
GO:0016300GO-mf tRNA (uracil) methyltransferase activity EnsemblGenomesN/AIEA
GO:0016706GO-mf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors EnsemblGenomesN/AIEA
KOG1331 KOG Predicted methyltransferase JGI N/AIEA
PTHR13069Panther UNCHARACTERIZED JGI N/AIEA
PF08241PFAM Methyltransferase domain JGI N/AIEA

Expression Patterns of Glyma.06g107100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g107100
ParalogEvidenceComments
Glyma.04g107300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g107100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g11230 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g107100
>Glyma.06g107100.1 sequence-type=CDS polypeptide=Glyma.06g107100.1.p locus=Glyma.06g107100 ID=Glyma.06g107100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATTCATAGTGTTCTAAAAGCAAGTAGGTTTCAAAATCCACGTAGAGAAGCCCTTGTTTTGACCATTGCTATCAGTGGTTGTGTTTGTCGTTTAGCATTTAGCTCAATGAAAGAAATCAATTGTAAAGTGGATTCTAGTTCATGTACTCTTGCCCCCAATAGGGAACCCTGCATCACAGAGTCCTTATCAGTTAGTGGGAATGGTACTACTACTTCATCTATGAGTGTAAAATCCACCCCTGAAATTGAAAAGAAGTTTGTTCATCATGTATATGATGCTATTGCGCCGCATTTCAGTGCCACCCGGTTTGCCAAGTGGCCGAAGGTTGCAGCATTTTTGTCATCTTTGCCTTTGGGATCTCTTGTCCTCGATGCCGGATGTGGGAATGGGAAATACTTAGGTTTGAATCAGGATTGTTTTTTTATAGGATGTGATATAAGTCCTTCCTTGATTAAGATCTGCTCGGACAGAGAGCATGAAGTTCTGGTCGCGGATGCTGTGAATCTCCCTTACAGGACTGGTTTCGGTGATGCAGCGATATCTATAGCTGTGTTACATCATTTAAGCACTGAAAATAGAAGGAGAAAGGCAATAGAAGAATTGGTCAGAGTTGTTAAAAAGGGTGGCCGTGTTCTGATTACAGTTTGGGCTGTAGAGCAAGAGGATAGTAAGCTGATTACCAAATGGACTCCACTGAATGAGAAGTATGTTGATGAGTGGGTAGGACCAGGTAGTCCTCATACTCGGGCACCTTCATCCTCGTCATTGGAAAGTATCCCCGAAAGTGAGGTGAGTACCTCTGGTGAGCACATGGAAGTTTGCCATGAGGCACATGCATCAAGATATTTGGAGGAAGAAAAAAATATAAAGAATCAACAGGAATACTTTGTTCCCTGGCATTTACCTTATCATCGTGCTGAAATCAGTGGCGCTTCTGCCGAAGCTCTTGCTGCTGGTCTGGCAACGAAAGATGACAAAAAAGGTGCTGTGGTGTATAATCGATATTATCATGTTTTTAGTGAAGGCGAGCTTGAAAGTTTGACAACTGAAATAAACAATGCTATAATTGTTGATCAGTTTTTTGATAAATCCAACTGGTGCATTATTCTAGAGAAGACAGTATGA
Predicted protein sequences of Glyma.06g107100
>Glyma.06g107100.1.p sequence-type=predicted peptide transcript=Glyma.06g107100.1 locus=Glyma.06g107100 ID=Glyma.06g107100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIHSVLKASRFQNPRREALVLTIAISGCVCRLAFSSMKEINCKVDSSSCTLAPNREPCITESLSVSGNGTTTSSMSVKSTPEIEKKFVHHVYDAIAPHFSATRFAKWPKVAAFLSSLPLGSLVLDAGCGNGKYLGLNQDCFFIGCDISPSLIKICSDREHEVLVADAVNLPYRTGFGDAAISIAVLHHLSTENRRRKAIEELVRVVKKGGRVLITVWAVEQEDSKLITKWTPLNEKYVDEWVGPGSPHTRAPSSSSLESIPESEVSTSGEHMEVCHEAHASRYLEEEKNIKNQQEYFVPWHLPYHRAEISGASAEALAAGLATKDDKKGAVVYNRYYHVFSEGELESLTTEINNAIIVDQFFDKSNWCIILEKTV*






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