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Report for Sequence Feature Glyma.06g101300

Feature Type:gene_model
Chromosome:Gm06
Start:8030244
stop:8031204
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g101300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G11870.2AT Seryl-tRNA synthetase JGI N/AIEA
GO:0006418GO-bp tRNA aminoacylation for protein translation EnsemblGenomesN/AIEA
GO:0006418GO-bp tRNA aminoacylation for protein translation JGI N/AIEA
GO:0006434GO-bp seryl-tRNA aminoacylation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding JGI N/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity JGI N/AIEA
GO:0004828GO-mf serine-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
PTHR11778Panther SERYL-TRNA SYNTHETASE JGI N/AIEA
PF00587PFAM tRNA synthetase class II core domain (G, H, P, S and T) JGI N/AIEA

Expression Patterns of Glyma.06g101300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g101300 not represented in the dataset
Glyma.06g101300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g101300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g10621 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g101300
>Glyma.06g101300.1 sequence-type=CDS polypeptide=Glyma.06g101300.1.p locus=Glyma.06g101300 ID=Glyma.06g101300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTCTTTATCGAGTTCACCAATTCAGCAAGGTGGAAATGTTTATTTTCTGCCGCCCAGAAGAGAGTGAACACTATCACCAAGAGCTTATTAAAATTGAAGAAGACCTCTTCTCATCCCTGGGATTGCATTTTAAATTAGGTGCAGCTGCTTATCATAAATTCGATGTGGAGGCATGGATGCCTGGTTTAGAACGGTTTGGTGAGATCTCAAGCGCCTCAAATTGCACAGACTATCAGAGCCGTCGTTTGGGAATAAGGTATTGTCCTGCATCAGAAGCACAAGCCACAAGTGCAAAAAAATCTAAAGGCAATCTTGCTCCACCACAGTTTGTTCACACATTAAATGCAACAGCCTGTGCAGTACCACGAATGATTATATGTTTGCTTGAGAATCATCAACAAGAAGATGGATCTGTCCTTATCCCTGAGCCCTTGAGGCCTTTCATGGGTGGCCTTAGTGTCATCGCTATAAAATCTTTATGA
Predicted protein sequences of Glyma.06g101300
>Glyma.06g101300.1.p sequence-type=predicted peptide transcript=Glyma.06g101300.1 locus=Glyma.06g101300 ID=Glyma.06g101300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
GLYRVHQFSKVEMFIFCRPEESEHYHQELIKIEEDLFSSLGLHFKLGAAAYHKFDVEAWMPGLERFGEISSASNCTDYQSRRLGIRYCPASEAQATSAKKSKGNLAPPQFVHTLNATACAVPRMIICLLENHQQEDGSVLIPEPLRPFMGGLSVIAIKSL*






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