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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G10920.1 | AT | L-Aspartase-like family protein | JGI | N/A | IEA |
| GO:0042450 | GO-bp | arginine biosynthetic process via ornithine | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0004056 | GO-mf | argininosuccinate lyase activity | EnsemblGenomes | N/A | IEA |
| KOG1316 | KOG | Argininosuccinate lyase | JGI | N/A | IEA |
| PTHR11444 | Panther | ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE | JGI | N/A | IEA |
| PTHR11444:SF3 | Panther | ARGININOSUCCINATE LYASE | JGI | N/A | IEA |
| PF00206 | PFAM | Lyase | JGI | N/A | IEA |
| ARGSYN-PWY | SoyCyc9 | L-arginine biosynthesis I (via L-ornithine) | Plant Metabolic Network | ISS | |
| ARGSYNBSUB-PWY | SoyCyc9 | L-arginine biosynthesis II (acetyl cycle) | Plant Metabolic Network | ISS | |
| PWY-4983 | SoyCyc9 | nitric oxide biosynthesis II (mammals) | Plant Metabolic Network | ISS | |
| PWY-4984 | SoyCyc9 | urea cycle | Plant Metabolic Network | ISS | |
| GN7V-62180 | SoyCyc9-rxn | argininosuccinate lyase | Plant Metabolic Network | ISS |
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Glyma.06g096700 not represented in the dataset |
Glyma.06g096700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.04g094600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma06g10130 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g096700.1 sequence-type=CDS polypeptide=Glyma.06g096700.1.p locus=Glyma.06g096700 ID=Glyma.06g096700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTTTCAAATGGTAGGATGCTGTGTTCAAGCTTGATTACAGCACCTCCGTCATCCTCCCTCTCCAGAACTACTCCATCCTACTTCTGCTCATTTCCTTCTCGTAGAATCATCTTCACGCCAAGAATTGGATCATCTCCGGCCCCGGCCCAGGCCCAGGCCCAGCCCAAGGAAGCCAAGCTCTGGGGTGGCAGGTTCGAGGAGGGCGTAACCGACGTTGTGGAGAGGTTCACCGAGTCGATCTCCTTCGACAAGAAGCTCTACAAACAAGACATCACGGGAAGCAGAGCACACGCTTCAATGCTCGCTCACCAGGGTTTGATAAGCGAGATTGACAGAGACTCTATTCTCCAAGGATTGGATGAAATAGAGAGGCGCATTGAGAATGGAGAGTTCAATTGGAGAGCTGACAGGGAGGATGTGCACATGAACATCGAGGCCGCGCTCACCGACTTGATCGGTGAGCCTGCCAAGAAGCTTCACACTGCGCGGAGCCGGAACGATCAGGTCTTGACGGATTTTCGCCTCTGGTGTCGGGACGCCATTGACAAGATCCTCCTGAGCATGAAGCAGCTCCAGGTCTCGCTGATCACCCTGGCTTTGAACAATCAGGGCCTCATTGTTCCTGGCTATACTCACTTGCAGCGCGCGCAGCCGGTTTTGCTGCAGCATCTTCTCTTGGCTTATGTTGAGGAGATTGAGCGTGATGCTGGTCGTTTGGTAGATTGTAGGGCTAGGATGAATTTCTGCCCCTTAGGAGCTTGTGCCTTGGCTGGTACAGGGCTTCCTATTGATCGATTCATGACTTCCGAAGCTTTAGGGTTTACGGCTCCTTTGAGGAATAGTATAGATGCTGTTTCAGACCGAGATTTTGTACTGGAGTTTCTTTCTGCTAATGCCATCACAGCTGTGCATCTTTCTCGACTTGGTGAAGAGTGGGTATTGTGGGCTTCGGAGGAATTTGGATTCATCACACCAAGTGACTCTGTTTCAACTGGAAGTAGTATAATGCCTCAGAAAAAGAATCCAGATCCGATGGAACTTGTTCGTGGGAAGTCTGCCAGAGTCATAGGGGATCTTGTTACTCTTCTCACATTGTGCAAAGGACTTCCTCATGCTTACAACCGCGATTTGCAGGAAGATAAAGAACCAGTATTTGACAGCGTTAAAACAATTTTGGGGATGCTTGAGGTATCAGCAGAATTCGCTCTAAAAATTACTTTCAATTGGGAAAGAATACAAAAGGCATTACCTGCTGGTCATCTTGATGCAACCACACTTGCTGATTATCTTGTTAATAAGGGCGTGCCATTTAGAACGTCTCACGATATCGCTGGAAAATCTGTTGCTTTATGTACATCGAAGAACTGCCAACTGCTAGACTTAAGTCTTGATGAGCTGAGAAGTATAAATCCAGTCTTTGAGGAGGATGTGTATGAATTTCTTGGAGTAGAAAATGCAATTAAGAAATTTGTCTCTTACGGCTCCACCGGGTCAGCATGTGTTGCCAGCCAACTTGATTATTGGCTGAGAAAACTTGAAATGAAGTGA
>Glyma.06g096700.1.p sequence-type=predicted peptide transcript=Glyma.06g096700.1 locus=Glyma.06g096700 ID=Glyma.06g096700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVSNGRMLCSSLITAPPSSSLSRTTPSYFCSFPSRRIIFTPRIGSSPAPAQAQAQPKEAKLWGGRFEEGVTDVVERFTESISFDKKLYKQDITGSRAHASMLAHQGLISEIDRDSILQGLDEIERRIENGEFNWRADREDVHMNIEAALTDLIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDKILLSMKQLQVSLITLALNNQGLIVPGYTHLQRAQPVLLQHLLLAYVEEIERDAGRLVDCRARMNFCPLGACALAGTGLPIDRFMTSEALGFTAPLRNSIDAVSDRDFVLEFLSANAITAVHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPHAYNRDLQEDKEPVFDSVKTILGMLEVSAEFALKITFNWERIQKALPAGHLDATTLADYLVNKGVPFRTSHDIAGKSVALCTSKNCQLLDLSLDELRSINPVFEEDVYEFLGVENAIKKFVSYGSTGSACVASQLDYWLRKLEMK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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