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Report for Sequence Feature Glyma.06g096400

Feature Type:gene_model
Chromosome:Gm06
Start:7623908
stop:7625147
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g096400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G61700.1AT RNA polymerases N / 8 kDa subunit JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006351GO-bp transcription, DNA-templated JGI N/AIEA
GO:0006360GO-bp transcription by RNA polymerase I EnsemblGenomesN/AIEA
GO:0006366GO-bp transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0006383GO-bp transcription by RNA polymerase III EnsemblGenomesN/AIEA
GO:0005665GO-cc DNA-directed RNA polymerase II, core complex EnsemblGenomesN/AIEA
GO:0005666GO-cc DNA-directed RNA polymerase III complex EnsemblGenomesN/AIEA
GO:0005736GO-cc DNA-directed RNA polymerase I complex EnsemblGenomesN/AIEA
GO:0001054GO-mf RNA polymerase I activity EnsemblGenomesN/AIEA
GO:0001055GO-mf RNA polymerase II activity EnsemblGenomesN/AIEA
GO:0001056GO-mf RNA polymerase III activity EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003899GO-mf DNA-directed 5'-3' RNA polymerase activity EnsemblGenomesN/AIEA
GO:0003899GO-mf DNA-directed RNA polymerase activity JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
KOG3497 KOG DNA-directed RNA polymerase, subunit RPB10 JGI N/AIEA
PTHR23413Panther 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N JGI N/AIEA
PF01194PFAM RNA polymerases N / 8 kDa subunit JGI N/AIEA

Expression Patterns of Glyma.06g096400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g096400
ParalogEvidenceComments
Glyma.04g094900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g096400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g10100 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g096400
>Glyma.06g096400.2 sequence-type=transcript locus=Glyma.06g096400 ID=Glyma.06g096400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGGCTACCCTGGGGTCATGAAGCGGCCCATTTAGTTGTGAATAGCAAAGATCTTCAAAGCCGTTTTGTTCATGAAATAACCTCAACGGCCGCAAGCACATTTATTAGAGGCGTGGTTTTGTTGTGAGTACTGAGCTGAGAAGAGGGAGAAGATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTAATTGGAAACAAATGGGATACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGACTGGTTCGGTATTGTTGTAGGCGCATGCTTATGACCCACGTTGATCTCATTGAGAAGTTGCTCAATTACAATACTTTGGACAAGTCTGATCTCAATTAAGAAGAAGGCTTGAGGAATAACAGATGACCAAGATGCTTCTGTTGTATTCCATGCCCTATGGCAATGCATCAATTTTTCTTTTCTTTTATGAATTGCTTTGGTACAAGCAGGTCATGTTTGTGTGCTGGTTCAGGTCAAGTGTGTTTGTTATCAGTTCTGAGGAGCTATGAAAAGACACAGCTTATGTTAATATCTCATATAATGATATGATATGACAGACCAAACTTTTGAATAATCTGACTGGTATTTTTAAAAATCTGATTGTTTTAGAATGTCGACATTGACACCAATGCATGTCCTTAATTTATATTAGGAATATTGCTACCTGACTTACTCTGCTTGTTGTAATTTAAATTGTACAATGCATATGAATAATTCTT

>Glyma.06g096400.3 sequence-type=transcript locus=Glyma.06g096400 ID=Glyma.06g096400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTCTTCGCTTCTTTCTTCTTCTCTGTTAATTCTTTTCTTACATCTTAAAAAACAATATAAAGAAGGGCGTGGTTTTGTTGTGAGTACTGAGCTGAGAAGAGGGAGAAGATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTAATTGGAAACAAATGGGATACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGACTGGTTCGGTATTGTTGTAGGCGCATGCTTATGACCCACGTTGATCTCATTGAGAAGTTGCTCAATTACAATAGTAACTTTGGACAAGTCTGATCTCAATTAAGAAGAAGGCTTGAGGAATAACAGATGACCAAGATGCTTCTGTTGTATTCCATGCCCTATGGCAATGCATCAATTTTTCTTTTCTTTTATGAATTGCTTTGGTACAAGCAGGTCATGTTTGTGTGCTGGTTCAGGTCAAGTGTGTTTGTTATCAGTTCTGAGGAGCTATGAAAAGACACAGCTTATGTTAATATCTCATATAATGATATGATATGACAGACCAAACTTTTGAATAATCTGACTGGTATTTTTAAAAATCTGATTGTTTTAGAATGTCGACATTGACACCAATGCATGTCCTTAATTTATATTAGGAATATTGCTACCTGACTTACTCTGCTTGTTGTAATTTAAATTGTACAATGCATATGAATAATTCTT
Coding sequences of Glyma.06g096400
>Glyma.06g096400.1 sequence-type=CDS polypeptide=Glyma.06g096400.1.p locus=Glyma.06g096400 ID=Glyma.06g096400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTAATTGGAAACAAATGGGATACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGACTGGTTCGGTATTGTTGTAGGCGCATGCTTATGACCCACGTTGATCTCATTGAGAAGTTGCTCAATTACAATACTTTGGACAAGTCTGATCTCAATTAA

>Glyma.06g096400.2 sequence-type=CDS polypeptide=Glyma.06g096400.2.p locus=Glyma.06g096400 ID=Glyma.06g096400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTAATTGGAAACAAATGGGATACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGACTGGTTCGGTATTGTTGTAGGCGCATGCTTATGACCCACGTTGATCTCATTGAGAAGTTGCTCAATTACAATACTTTGGACAAGTCTGATCTCAATTAA

>Glyma.06g096400.3 sequence-type=CDS polypeptide=Glyma.06g096400.3.p locus=Glyma.06g096400 ID=Glyma.06g096400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTAATTGGAAACAAATGGGATACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGACTGGTTCGGTATTGTTGTAGGCGCATGCTTATGACCCACGTTGATCTCATTGAGAAGTTGCTCAATTACAATAGTAACTTTGGACAAGTCTGA
Predicted protein sequences of Glyma.06g096400
>Glyma.06g096400.1.p sequence-type=predicted peptide transcript=Glyma.06g096400.1 locus=Glyma.06g096400 ID=Glyma.06g096400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDLN*

>Glyma.06g096400.2.p sequence-type=predicted peptide transcript=Glyma.06g096400.2 locus=Glyma.06g096400 ID=Glyma.06g096400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDLN*

>Glyma.06g096400.3.p sequence-type=predicted peptide transcript=Glyma.06g096400.3 locus=Glyma.06g096400 ID=Glyma.06g096400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFGQV*






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