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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G32810.1 | AT | carotenoid cleavage dioxygenase 8 | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0016702 | GO-mf | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0051213 | GO-mf | dioxygenase activity | EnsemblGenomes | N/A | IEA |
| KOG1285 | KOG | Beta, beta-carotene 15,15'-dioxygenase and related enzymes | JGI | N/A | IEA |
| PTHR10543 | Panther | BETA-CAROTENE DIOXYGENASE | JGI | N/A | IEA |
| PTHR10543:SF6 | Panther | 15,15' BETA CAROTENE DIOXYGENASE | JGI | N/A | IEA |
| PF03055 | PFAM | Retinal pigment epithelial membrane protein | JGI | N/A | IEA |
| PWY-7101 | SoyCyc9 | 5-deoxystrigol biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-58454 | SoyCyc9-rxn | 9-cis-10'-apo-β-carotenal cleavage dioxygenase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| CCD8 | carotenoid cleavage dioxygenase |
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Glyma.06g085800 not represented in the dataset |
Glyma.06g085800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.04g084100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma06g09000 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g085800.1 sequence-type=CDS polypeptide=Glyma.06g085800.1.p locus=Glyma.06g085800 ID=Glyma.06g085800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTTCACCTTCTCGCCTTCAATCAGAAACTCCATTTCATGGCCAACTATGCTTGTTCCTGACATGCCTGATATCAATATCTCACTTCGAAATAAAGGCATCTACAAAGGGAAACGCAATATTAATCTGCGAGACTTGACCAAGGCAAATGTTGCAAGTCCATCATTACCTTTGATTGCCCCACCAACACCCGAGGAACGCCCAGGAATCACCCATGACTGCCACCACCACCACCATGTTGCATGGACTAGTATCCCGCAAGAGAGATGGGAAGGAGAGTTACAAGTTCAAGGGCAAATACCATTATGGCTGGAAGGAACGTACCTAAGGAATGGTCCGGGCATGTGGCACATAGGGGACTACAACTTCCGGCACCTCTTCGACGGTTACGCCACCCTGGTGAGGCTCGGTTTCCGGAACGGCCGGCTAGTCGCGGGGCACCGGCAAATCGAGTCGGAGGCGTACCGGGCGGCGAAGAAGAACAAGAAGATATGTTACAGGGAGTTCTCCGAGGTGCCTAAGGCTGCGAATTTCCTGGCCTACGTGGGGGAGCTGGCGAGCCTGTTCTCTGGCGCTTCCCTGACCGACAACGCGAACACCGGCGTGGTGAAACTCGGCGACGGCAGGGTGGTGTGCCTTACGGAGACTCAGAAAGGGTCCATAGTGATAGACCCTGAGACGTTGGAGACAGTGGGGAAGTTTGAGTACAGTGACTCGTTGGGGGGTCTTATTCACTCCGCACATCCCATTGTGACGGATGAAGAGTTTTTGACGTTGTTGCCTGATTTGGTGAGAGCAGGGTACCTTGTTGTTAGGATGGAGCCTGGTACCAATGAGAGGAGGGTCATTGGAAGGGTCAATTGTAGGGGTGGGCCTGCACCTGGTTGGGTTCATTCTTTTCCTGTTACTCAACATTATGTTGTTGTGCCTGAAATGCCGTTGAGGTACTGTGCTCAGAATTTGCTCAAAGCTGAACCTACTCCTTTGTACAAGTTTGAGTGGCACCCTGAATCCAGAGCTTTTATGCATGTAATGTGCAAGACTAGTGGGAAAATTGTGGCAAGTGTGGAAGTGCCTCTGTTTGTTACTTTCCATTTCATAAATGCGTACGAGGAGCAAGATGAAGATGGGAGGGTGACGGCCATTATTGCTGACTGTTGTGAGCACAATTCAGATACTACCATTCTTGATAGGCTTAGGTTGCAGAACCTTCGTTCGTTTAATGGTGAAGATGTTCTACCTGATGCTAGGGTTGGGCGGTTTAGAATACCACTGGATGGAAGTCCATATGGAACATTAGATGCAGCATTGGAGCCGAATGAACATGGGAGAGGCATGGACATGTGCAGCATAAACCCTAATTATTTAGGGAAGAAATACAGATATGCATATGCTTGCGGAGCACAAAGACCTTGTAACTTTCCCAACACCCTCACCAAGCTTGATTTTGAATTAAAGAAGGCTAAGAACTGGCATGAAGAAGGTGCAGTGCCCTCAGAACCCTTCTTTGTGGCACGACCAGGAGCAACAGAGGAAGATGATGGCGTAGTCATCTCCATTGTCAGTGAGAAAAATGGAGAAGGATTTGCGTTGGTGTTAGATGGTTCCACTTTTGAAGAGATTGCTAGGGCCAAATTCCCCTATGGACTTCCATATGGGTTGCATGGATGCTGGGTTCCAAAAGAGTAA
>Glyma.06g085800.1.p sequence-type=predicted peptide transcript=Glyma.06g085800.1 locus=Glyma.06g085800 ID=Glyma.06g085800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAFTFSPSIRNSISWPTMLVPDMPDINISLRNKGIYKGKRNINLRDLTKANVASPSLPLIAPPTPEERPGITHDCHHHHHVAWTSIPQERWEGELQVQGQIPLWLEGTYLRNGPGMWHIGDYNFRHLFDGYATLVRLGFRNGRLVAGHRQIESEAYRAAKKNKKICYREFSEVPKAANFLAYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIVIDPETLETVGKFEYSDSLGGLIHSAHPIVTDEEFLTLLPDLVRAGYLVVRMEPGTNERRVIGRVNCRGGPAPGWVHSFPVTQHYVVVPEMPLRYCAQNLLKAEPTPLYKFEWHPESRAFMHVMCKTSGKIVASVEVPLFVTFHFINAYEEQDEDGRVTAIIADCCEHNSDTTILDRLRLQNLRSFNGEDVLPDARVGRFRIPLDGSPYGTLDAALEPNEHGRGMDMCSINPNYLGKKYRYAYACGAQRPCNFPNTLTKLDFELKKAKNWHEEGAVPSEPFFVARPGATEEDDGVVISIVSEKNGEGFALVLDGSTFEEIARAKFPYGLPYGLHGCWVPKE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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