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Report for Sequence Feature Glyma.06g082400

Feature Type:gene_model
Chromosome:Gm06
Start:6336628
stop:6341690
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g082400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11520.1AT aspartate aminotransferase 3 JGI N/AIEA
GO:0006520GO-bp cellular amino acid metabolic process EnsemblGenomesN/AIEA
GO:0009058GO-bp biosynthetic process EnsemblGenomesN/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004069GO-mf L-aspartate:2-oxoglutarate aminotransferase activity EnsemblGenomesN/AIEA
GO:0008483GO-mf transaminase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding JGI N/AIEA
GO:0080130GO-mf L-phenylalanine:2-oxoglutarate aminotransferase activity EnsemblGenomesN/AIEA
KOG1411 KOG Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 JGI N/AIEA
PTHR11879Panther ASPARTATE AMINOTRANSFERASE JGI N/AIEA
PF00155PFAM Aminotransferase class I and II JGI N/AIEA
ASPARTATE-DEG1-PWYSoyCyc9 L-aspartate degradation I Plant Metabolic Network ISS
ASPARTATESYN-PWYSoyCyc9 L-aspartate biosynthesis Plant Metabolic Network ISS
MALATE-ASPARTATE-SHUTTLE-PWYSoyCyc9 L-aspartate degradation II Plant Metabolic Network ISS
PWY-3001SoyCyc9 superpathway of L-isoleucine biosynthesis I Plant Metabolic Network ISS
THRESYN-PWYSoyCyc9 superpathway of L-threonine biosynthesis Plant Metabolic Network ISS
GN7V-43846SoyCyc9-rxn aspartate transaminase Plant Metabolic Network ISS

Proteins Associated with Glyma.06g082400
LocusGene SymbolProtein Name
AAT aspartate aminotransferase glyoxysomal isozyme AAT1 precursor

Expression Patterns of Glyma.06g082400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g082400
ParalogEvidenceComments
Glyma.04g080700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g082400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g08670 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g082400
>Glyma.06g082400.2 sequence-type=transcript locus=Glyma.06g082400 ID=Glyma.06g082400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGAAAGCGATAAGGAGACCCACCGACTAAACGATGATACAAGCGGTGACATTTCAATCGCCATCCATTACATATTAATACTCCATTTGATAATAGTAGCGAAGAAAAAACAAACTCATTCTTCTTACATAATAGGGGAAGGAGAAGAAAAAAAATGAAATAAGAAAAACTCAACTTTGTAATTCGTGGAGGGAATACTTTTCCATTACGCACGCACTTTAATTACAGACGAGAAAATTATAATTAATAGTAATACAGACAGCAGCATGCGCCCACCGGTTATTCTCAAAACTACCACCTCTCTTTTGGATTCTTCTTCTTCTTCACCACCCTGTGATCGCAGACTCAACACTCTCGCTAGACACTTCCTTCCGCAAATGGCTTCTCACGACAGCATCTCCGCTTCTCCAACCTCCGCTTCTGATTCCGTCTTCAATCACCTCGTTCGTGCTCCCGAAGATCCTATCCTCGGGGTAACTGTCGCTTATAACAAAGATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCATAAATGACGTGTCACGCAACAAGGAATATATTCCGATCGTTGGGCTTGCTGATTTTAATAAATTGAGTGCTAAGCTTATTTTTGGGGCTGACAGCCCTGCTATTCAAGACAACAGGGTTACCACTGTTCAATGCTTGTCTGGAACTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAACGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTCAACTTAGCAGGCTTGTCTGTCAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTACATGCATGCGCACATAACCCCACTGGTGTGGATCCAACCCTTGAGCAATGGGAGCAGATTAGGCAGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGGGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTTGTTGCTGATGGAGGCGAATTGCTGGTAGCACAAAGCTATGCAAAGAATCTGGGTCTTTATGGGGAACGTGTTGGCGCCTTAAGCATTGTCTGCAAGTCAGCTGATGTTGCAAGCAGGGTTGAGAGCCAGCTGAAGCTAGTGATTAGGCCCATGTACTCAAGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGGTAATGAGCCAAGCTTCTGCTTTCCTAAGATGAACTACACAAAGAAGGATTTGTTGTTGACTATCTTATTATTCTTTCCCCACTTCTTTTTTTTCTGATGAATGCTAGTCTTGAATGGTAGTGTCAAGTGGTAATGAATTTGATGGTTGTAACTACTTTGGTATTTATAGAGGCCATTCTTCCAATATATGTTTGATTAGAAGGGAGATTATACTGAGCATTGTCTTTATCCAAGATGATGATTTTCCTGGTTGTGATTGCTTCGTCATATATATTGAATACTGCCTAGGAGGTGTTCTTAGTACACATTCTTTTGCTAGGTGACTTTTTTCTGTTAAAATTTCCCACTTGTCTTTGCTTCTCTTTCAGGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTTTCACTGGATTGAATGCGGAACAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGATGCGATACATGCAGCTGTAACCCGAGTTGTCTAAAACATGTTGACAACAGTTTTCAACATGCTCCCTAGTCCCTATAGGAGAACTTCCATTATTTTTGTTTAATAATTGTCAACATCAACAATGAAACCTTTTATTTGATGTGAGATTTTTAAAGGAAACTTTTCTGCCTACCGGGCTCCATCCAGAGATTTAGCATTATAACATTTTTATTCCGTTTCCCAATGTGGCATGATCAAATGTTTCTTAGGGGGATTTTTTTTTCCGAGGGTCCTTGTTGGAAAGAAACAAACATCCGATGGATTAGTTTAAACTCAAATGTGGCGAGATAGATTTGTGGTGGGGTGTGTGAAACGGAATGTCTAAATCATACTATTAGAAAGACTCGG
Coding sequences of Glyma.06g082400
>Glyma.06g082400.1 sequence-type=CDS polypeptide=Glyma.06g082400.1.p locus=Glyma.06g082400 ID=Glyma.06g082400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGCCCACCGGTTATTCTCAAAACTACCACCTCTCTTTTGGATTCTTCTTCTTCTTCACCACCCTGTGATCGCAGACTCAACACTCTCGCTAGACACTTCCTTCCGCAAATGGCTTCTCACGACAGCATCTCCGCTTCTCCAACCTCCGCTTCTGATTCCGTCTTCAATCACCTCGTTCGTGCTCCCGAAGATCCTATCCTCGGGGTAACTGTCGCTTATAACAAAGATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCATAAATGACGTGTCACGCAACAAGGAATATATTCCGATCGTTGGGCTTGCTGATTTTAATAAATTGAGTGCTAAGCTTATTTTTGGGGCTGACAGCCCTGCTATTCAAGACAACAGGGTTACCACTGTTCAATGCTTGTCTGGAACTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAACGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTCAACTTAGCAGGCTTGTCTGTCAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTACATGCATGCGCACATAACCCCACTGGTGTGGATCCAACCCTTGAGCAATGGGAGCAGATTAGGCAGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGGGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTTGTTGCTGATGGAGGCGAATTGCTGGTAGCACAAAGCTATGCAAAGAATCTGGGTCTTTATGGGGAACGTGTTGGCGCCTTAAGCATTGTCTGCAAGTCAGCTGATGTTGCAAGCAGGGTTGAGAGCCAGCTGAAGCTAGTGATTAGGCCCATGTACTCAAGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTTTCACTGGATTGAATGCGGAACAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGATGCGATACATGCAGCTGTAACCCGAGTTGTCTAA

>Glyma.06g082400.2 sequence-type=CDS polypeptide=Glyma.06g082400.2.p locus=Glyma.06g082400 ID=Glyma.06g082400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGCCCACCGGTTATTCTCAAAACTACCACCTCTCTTTTGGATTCTTCTTCTTCTTCACCACCCTGTGATCGCAGACTCAACACTCTCGCTAGACACTTCCTTCCGCAAATGGCTTCTCACGACAGCATCTCCGCTTCTCCAACCTCCGCTTCTGATTCCGTCTTCAATCACCTCGTTCGTGCTCCCGAAGATCCTATCCTCGGGGTAACTGTCGCTTATAACAAAGATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCATAAATGACGTGTCACGCAACAAGGAATATATTCCGATCGTTGGGCTTGCTGATTTTAATAAATTGAGTGCTAAGCTTATTTTTGGGGCTGACAGCCCTGCTATTCAAGACAACAGGGTTACCACTGTTCAATGCTTGTCTGGAACTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAACGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTCAACTTAGCAGGCTTGTCTGTCAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTACATGCATGCGCACATAACCCCACTGGTGTGGATCCAACCCTTGAGCAATGGGAGCAGATTAGGCAGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGGGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTTGTTGCTGATGGAGGCGAATTGCTGGTAGCACAAAGCTATGCAAAGAATCTGGGTCTTTATGGGGAACGTGTTGGCGCCTTAAGCATTGTCTGCAAGTCAGCTGATGTTGCAAGCAGGGTTGAGAGCCAGCTGAAGCTAGTGATTAGGCCCATGTACTCAAGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGGTAA
Predicted protein sequences of Glyma.06g082400
>Glyma.06g082400.1.p sequence-type=predicted peptide transcript=Glyma.06g082400.1 locus=Glyma.06g082400 ID=Glyma.06g082400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRPPVILKTTTSLLDSSSSSPPCDRRLNTLARHFLPQMASHDSISASPTSASDSVFNHLVRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRRVEQQLINDVSRNKEYIPIVGLADFNKLSAKLIFGADSPAIQDNRVTTVQCLSGTGSLRVGGEFLAKHYHQRTIYLPTPTWGNHPKVFNLAGLSVKTYRYYAPATRGLDFQGLLEDLGSAPSGSIVLLHACAHNPTGVDPTLEQWEQIRQLIRSKALLPFFDSAYQGFASGSLDADAQPVRLFVADGGELLVAQSYAKNLGLYGERVGALSIVCKSADVASRVESQLKLVIRPMYSSPPIHGASIVAAILKDRNLFNDWTIELKAMADRIISMRQELFDALCSRGTPGDWSHIIKQIGMFTFTGLNAEQVSFMTKEFHIYMTSDGRISMAGLSSKTVPLLADAIHAAVTRVV*

>Glyma.06g082400.2.p sequence-type=predicted peptide transcript=Glyma.06g082400.2 locus=Glyma.06g082400 ID=Glyma.06g082400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRPPVILKTTTSLLDSSSSSPPCDRRLNTLARHFLPQMASHDSISASPTSASDSVFNHLVRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRRVEQQLINDVSRNKEYIPIVGLADFNKLSAKLIFGADSPAIQDNRVTTVQCLSGTGSLRVGGEFLAKHYHQRTIYLPTPTWGNHPKVFNLAGLSVKTYRYYAPATRGLDFQGLLEDLGSAPSGSIVLLHACAHNPTGVDPTLEQWEQIRQLIRSKALLPFFDSAYQGFASGSLDADAQPVRLFVADGGELLVAQSYAKNLGLYGERVGALSIVCKSADVASRVESQLKLVIRPMYSSPPIHGASIVAAILKDR*






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