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Report for Sequence Feature Glyma.06g081400

Feature Type:gene_model
Chromosome:Gm06
Start:6260611
stop:6264979
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g081400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G64880.1AT Ribosomal protein S5 family protein JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
KOG2646 KOG Ribosomal protein S5 JGI N/AIEA
PTHR13718Panther RIBOSOMAL S SUBUNIT JGI N/AIEA
PTHR13718:SF2Panther JGI N/AIEA
PF00333PFAM Ribosomal protein S5, N-terminal domain JGI N/AIEA
PF03719PFAM Ribosomal protein S5, C-terminal domain JGI N/AIEA

Expression Patterns of Glyma.06g081400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g081400
ParalogEvidenceComments
Glyma.04g079800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g081400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g08570 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g081400
>Glyma.06g081400.1 sequence-type=CDS polypeptide=Glyma.06g081400.1.p locus=Glyma.06g081400 ID=Glyma.06g081400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTACATCCACCATGGAAGAACCGGTCTCAGGCACTTATTCAGATTCAGAACCGCCACCGGCGTGGTAAAAAACTCCGCGAGATCGCAATTACGCACTGCATTTCTCTCCCATTCTTCCCCTATCCTCGGCAACAACGTGGTTTTTTTCTCCACAGGCGACAAATTCCTGCACGAAATTACCGCGGAGGTGGAGAAAGACAGGCGCAGGGAGCGAAACGAGCGTTTGCGCCTCGGCCTCGACACCGCCGACATCGACGCCGAGTCGGAGCAGGACTACATGGGCGTGGGGCCCCTCATCGCGAAGCTCGAGAAGGAAATGCTCAAGGAATCTGCTGAGCTGAACCGCTACGAGGAGCCCACCGACTCCGAGGACGACTCCGACGAGGAAACCATGGACGACGCCGACAAGAAGGTGAGTGATTTCGAGAAGAAAAAAGACAAGCACATGGACCTTCTCGATAAATTCACCTCAGCCGAAACCCTAGACGACGCGTTTAAGTGGATGGCCAAAATAGATAACTTCGAAAACAAGCATTTCCGCCTGAGGCCTGAGTATAGGGTTATTGGTGAGCTCATGAATCGGCTTAAGGTCGCGACAGAGCTGAAGGACAAGGCCGAGAGACCGGCGAGACTAGCCGGGCCGTCACCGCGAGCAGCAACCGCAGACGCGAAGGAAGAGGCTGAGTTCGAGAAGGAGAAGCAGAAGCAGATTGAGGAGGGAGATAATGCTGATGATGAGGAGGAGCAGGAGTTTGATGACATGAAGGAGAAGGATAATGTACTGATGGCCAAACTTGAGGCTATCGATAGGAAGCTCGAGGAGAAGTTGGCGGAGCTCGAGTATACATTTGGGAGGAAGGGGAAGGCGCTCGAGGAAGAGATCAAGGATCTCGCTGAGGAGAGAAATGAATTGACTGAGCAGAAGAGAAAGCCACTTTACCGGAAGGGTTTTGATACAAGATTGATAGACATGAACCGAACTTGTAAAGTCACAAAGGGAGGACAAGTTGTGAAGTATACTGCCATGGTAGCTTGTGGCAACTATAATGGCGTCATTGGTTTTGCAAAAGCCAAAGGCCCTGCAGTCCCAGTTGCCCTTCAAAAGGCGTATGAGAAATGCTTCCAGAATTTGCATTATGTAGAGCGACATGAGGAGCATACAATTGCACATGCAGTACAAACGTCTTATAAAAAGACCAAGGTTTATCTCTGGCCCGCTCCTACTACAACTGGCATGAAAGCCGGCAGATCAGTCGAAGCCATACTGCATTTAGCTGGTTTGAAGAATGTCAAATCAAAGGTCATTGGTTCCAGAAATCCTCATAATACAGTTAAAGCTGTCTTCAAAGCACTGAATGCAATTGAAACGCCAAGGGATGTCCAAGAGAAGTTTGGCAGGACTGTGGTTGAGAAGTATCTCTTGTGA
Predicted protein sequences of Glyma.06g081400
>Glyma.06g081400.1.p sequence-type=predicted peptide transcript=Glyma.06g081400.1 locus=Glyma.06g081400 ID=Glyma.06g081400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGYIHHGRTGLRHLFRFRTATGVVKNSARSQLRTAFLSHSSPILGNNVVFFSTGDKFLHEITAEVEKDRRRERNERLRLGLDTADIDAESEQDYMGVGPLIAKLEKEMLKESAELNRYEEPTDSEDDSDEETMDDADKKVSDFEKKKDKHMDLLDKFTSAETLDDAFKWMAKIDNFENKHFRLRPEYRVIGELMNRLKVATELKDKAERPARLAGPSPRAATADAKEEAEFEKEKQKQIEEGDNADDEEEQEFDDMKEKDNVLMAKLEAIDRKLEEKLAELEYTFGRKGKALEEEIKDLAEERNELTEQKRKPLYRKGFDTRLIDMNRTCKVTKGGQVVKYTAMVACGNYNGVIGFAKAKGPAVPVALQKAYEKCFQNLHYVERHEEHTIAHAVQTSYKKTKVYLWPAPTTTGMKAGRSVEAILHLAGLKNVKSKVIGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKYLL*






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