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Report for Sequence Feature Glyma.06g080300

Feature Type:gene_model
Chromosome:Gm06
Start:6170065
stop:6172699
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g080300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G24840.1AT tRNA (guanine-N-7) methyltransferase JGI N/AIEA
GO:0006400GO-bp tRNA modification EnsemblGenomesN/AIEA
GO:0006400GO-bp tRNA modification JGI N/AIEA
GO:0008033GO-bp tRNA processing EnsemblGenomesN/AIEA
GO:0030488GO-bp tRNA methylation EnsemblGenomesN/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0036265GO-bp RNA (guanine-N7)-methylation EnsemblGenomesN/AIEA
GO:0106004GO-bp tRNA (guanine-N7)-methylation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0043527GO-cc tRNA methyltransferase complex EnsemblGenomesN/AIEA
GO:0000049GO-mf tRNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0008176GO-mf tRNA (guanine-N7-)-methyltransferase activity EnsemblGenomesN/AIEA
GO:0008176GO-mf tRNA (guanine-N7-)-methyltransferase activity JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG3115 KOG Methyltransferase-like protein JGI N/AIEA
PTHR23417Panther 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE JGI N/AIEA
PTHR23417:SF1Panther JGI N/AIEA
PF02390PFAM Putative methyltransferase JGI N/AIEA

Expression Patterns of Glyma.06g080300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g080300 not represented in the dataset
Glyma.06g080300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g080300
ParalogEvidenceComments
Glyma.04g078700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g080300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g08450 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g080300
>Glyma.06g080300.2 sequence-type=transcript locus=Glyma.06g080300 ID=Glyma.06g080300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAAACCTACACAATTCCCTCCTTCACTTCTGCTTCAACAATTCAAAGCCTGCTTCTGTTTCGGTTTTACCTTTCTTCGTTTCGTTGCTGCTACAACCGCTACTTGTAGAGCCTCAGCAAAGTCACAGAATTCAGAATCAGTATCGAAGAATTCAATAGTTTTCTCCAGGATTCTCTCTGTTAGTTTGAATAAAGAGACATGTCTAAGACTGAGGTAAATCCAACTATCAGCAAGTCAACTGGATTGCCTCGAAAGCGCTTCTATCGAGCACGAGCACACAGCAATCCGCTGAGTGACTCTCACTTCCCTGTGCCAATTTCACCCAGCCATGTTGACTATTCCCTCCATTACCCTCAGTTATTGCCCTCGTCTGGTCAAGCTGATACTTTCAAAAAGATCCAGTTTGCTGATGTTGGTTGTGGTTTTGGAGGGCTGCTCATAAGTCTTTCCACTCTGTTCCCAGAAACATTGATGATTGGAATGGAACTTAGAGACAAAGTGACTGAGTACGTCAAGGAACGAATTTTATCTTTAAGGGTAGCAAATCCAGGTCAATACCAAAATGTTTCTGTGGTACGAACTAACTCCATGAAGTATATTCCCAATTACTTTGAGAAAGGAACGCTCTCAAAGATGTTTTTCTTGTTTCCTGATCCTCATTTTAAAGAGAAGAATCATCGCCGTAGGGTTATCAGTCCATTCTTGCTAGATGAGTATGCTTATGTTCTCGAGGTTGGTGGAATTATATACACAATAACAGACGTAGAAGAGCTTGGGTACTGGATGAAGTCTTGTCTGGAGAATCACCGCATGTTCGAAGCTTTGACTGATAAAGAACTTGAAGCAGATGCAGTTGTGAAGCTTTTAAGTTCTGCTACTGAAGAAGGCCAAAAGGTTGCTAGAAATGGGGGACAAACTTTCCAGGCTATATTCAGACGCATTGTACCATCGGATCAAGCATCCTAGATTTCTGCTGCCTAATCTAGTGCGCTGCAAATTAAAATTAAAAAATGCTTGTTGCATGCTAAGCATTGGATTGATCTGTTTACTTTACTGGTATACGATTGGCTTCATTAGGATCACATGGCCTTTGCCATCTTTTATTTGCTATGTGCTTATTTTCATGTTTAACTGAAATTATTCGATTTTGAAAGCAAAACTATAATGGA
Coding sequences of Glyma.06g080300
>Glyma.06g080300.1 sequence-type=CDS polypeptide=Glyma.06g080300.1.p locus=Glyma.06g080300 ID=Glyma.06g080300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTAAGACTGAGGTAAATCCAACTATCAGCAAGTCAACTGGATTGCCTCGAAAGCGCTTCTATCGAGCACGAGCACACAGCAATCCGCTGAGTGACTCTCACTTCCCTGTGCCAATTTCACCCAGCCATGTTGACTATTCCCTCCATTACCCTCAGTTATTGCCCTCGTCTGGTCAAGCTGATACTTTCAAAAAGATCCAGTTTGCTGATGTTGGTTGTGGTTTTGGAGGGCTGCTCATAAGTCTTTCCACTCTGTTCCCAGAAACATTGATGATTGGAATGGAACTTAGAGACAAAGTGACTGAGTACGTCAAGGAACGAATTTTATCTTTAAGGGTAGCAAATCCAGGTCAATACCAAAATGTTTCTGTGGTACGAACTAACTCCATGAAGTATATTCCCAATTACTTTGAGAAAGGAACGCTCTCAAAGATGTTTTTCTTGTTTCCTGATCCTCATTTTAAAGAGAAGAATCATCGCCGTAGGGTTATCAGTCCATTCTTGCTAGATGAGTATGCTTATGTTCTCGAGGTTGGTGGAATTATATACACAATAACAGACGTAGAAGAGCTTGGGTACTGGATGAAGTCTTGTCTGGAGAATCACCGCATGTTCGAAGCTTTGACTGATAAAGAACTTGAAGCAGATGCAGTTGTGAAGCTTTTAAGTTCTGCTACTGAAGAAGGCCAAAAGGTTGCTAGAAATGGGGGACAAACTTTCCAGGCTATATTCAGACGCATTGTACCATCGGATCAAGCATCCTAG

>Glyma.06g080300.2 sequence-type=CDS polypeptide=Glyma.06g080300.2.p locus=Glyma.06g080300 ID=Glyma.06g080300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTAAGACTGAGGTAAATCCAACTATCAGCAAGTCAACTGGATTGCCTCGAAAGCGCTTCTATCGAGCACGAGCACACAGCAATCCGCTGAGTGACTCTCACTTCCCTGTGCCAATTTCACCCAGCCATGTTGACTATTCCCTCCATTACCCTCAGTTATTGCCCTCGTCTGGTCAAGCTGATACTTTCAAAAAGATCCAGTTTGCTGATGTTGGTTGTGGTTTTGGAGGGCTGCTCATAAGTCTTTCCACTCTGTTCCCAGAAACATTGATGATTGGAATGGAACTTAGAGACAAAGTGACTGAGTACGTCAAGGAACGAATTTTATCTTTAAGGGTAGCAAATCCAGGTCAATACCAAAATGTTTCTGTGGTACGAACTAACTCCATGAAGTATATTCCCAATTACTTTGAGAAAGGAACGCTCTCAAAGATGTTTTTCTTGTTTCCTGATCCTCATTTTAAAGAGAAGAATCATCGCCGTAGGGTTATCAGTCCATTCTTGCTAGATGAGTATGCTTATGTTCTCGAGGTTGGTGGAATTATATACACAATAACAGACGTAGAAGAGCTTGGGTACTGGATGAAGTCTTGTCTGGAGAATCACCGCATGTTCGAAGCTTTGACTGATAAAGAACTTGAAGCAGATGCAGTTGTGAAGCTTTTAAGTTCTGCTACTGAAGAAGGCCAAAAGGTTGCTAGAAATGGGGGACAAACTTTCCAGGCTATATTCAGACGCATTGTACCATCGGATCAAGCATCCTAG
Predicted protein sequences of Glyma.06g080300
>Glyma.06g080300.1.p sequence-type=predicted peptide transcript=Glyma.06g080300.1 locus=Glyma.06g080300 ID=Glyma.06g080300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSKTEVNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPQLLPSSGQADTFKKIQFADVGCGFGGLLISLSTLFPETLMIGMELRDKVTEYVKERILSLRVANPGQYQNVSVVRTNSMKYIPNYFEKGTLSKMFFLFPDPHFKEKNHRRRVISPFLLDEYAYVLEVGGIIYTITDVEELGYWMKSCLENHRMFEALTDKELEADAVVKLLSSATEEGQKVARNGGQTFQAIFRRIVPSDQAS*

>Glyma.06g080300.2.p sequence-type=predicted peptide transcript=Glyma.06g080300.2 locus=Glyma.06g080300 ID=Glyma.06g080300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSKTEVNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPQLLPSSGQADTFKKIQFADVGCGFGGLLISLSTLFPETLMIGMELRDKVTEYVKERILSLRVANPGQYQNVSVVRTNSMKYIPNYFEKGTLSKMFFLFPDPHFKEKNHRRRVISPFLLDEYAYVLEVGGIIYTITDVEELGYWMKSCLENHRMFEALTDKELEADAVVKLLSSATEEGQKVARNGGQTFQAIFRRIVPSDQAS*






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