SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.06g077300

Feature Type:gene_model
Chromosome:Gm06
Start:5974721
stop:5979299
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g077300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G14870.1AT cyclic nucleotide-gated channel 18 JGI N/AIEA
GO:0006811GO-bp ion transport EnsemblGenomesN/AIEA
GO:0006811GO-bp ion transport JGI N/AIEA
GO:0006874GO-bp cellular calcium ion homeostasis EnsemblGenomesN/AIEA
GO:0009860GO-bp pollen tube growth EnsemblGenomesN/AIEA
GO:0034220GO-bp ion transmembrane transport EnsemblGenomesN/AIEA
GO:0042391GO-bp regulation of membrane potential EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0071805GO-bp potassium ion transmembrane transport EnsemblGenomesN/AIEA
GO:0005887GO-cc integral component of plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016324GO-cc apical plasma membrane EnsemblGenomesN/AIEA
GO:0005216GO-mf ion channel activity EnsemblGenomesN/AIEA
GO:0005216GO-mf ion channel activity JGI N/AIEA
GO:0005249GO-mf voltage-gated potassium channel activity EnsemblGenomesN/AIEA
GO:0005262GO-mf calcium channel activity EnsemblGenomesN/AIEA
KOG0498 KOG K+-channel ERG and related proteins, contain PAS/PAC sensor domain JGI N/AIEA
PTHR10217Panther VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL JGI N/AIEA
PTHR10217:SF7Panther JGI N/AIEA
PF00027PFAM Cyclic nucleotide-binding domain JGI N/AIEA
PF00520PFAM Ion transport protein JGI N/AIEA

Expression Patterns of Glyma.06g077300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g077300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g08110 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g077300
>Glyma.06g077300.1 sequence-type=CDS polypeptide=Glyma.06g077300.1.p locus=Glyma.06g077300 ID=Glyma.06g077300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATAGAATATTATCGACGCCGGCGTCGAAGTTCCGCCAGTTCCGGCGACTCCGGTCTCGACCGAAGGCAGCGACAGCGACAGCGACAGAGGAGGAGCACGCGTTCCAGATCCTATGGCGTTACCAGATCCTGGACCCCGACAGCGACATCGTGGCCTATTGGAACCGGGTGTTCCTTGTTACGAGCCTCCTCGCCCTCTTCATCGACCCTCTCTACTTCTTCCTCCCCACCGTTGGCGGCCCCGCCTGCCTCCAGGCTGATCCCAAACTCAGCATCCTCGTTACCATCCTCCGCTCCTTCGCCGACCTCTTCTACGTCCTCCACATGATCATGAAGTTTCGCACCGCCTTCGTCGCCCCCAACTCTCGAATCTTCGGCCGCGGCGAGCTCGTCATGGACGCCCGCGAAATCGCCATGCGCTACTTGAAGTCTGATTTCGTCATTGACCTTGCTGCCACCATCCCTCTCCCCCAGATTGTTATTTGGTTGGTGATTCCTGCCAGTAGAAACGCAAGAACTGACCATGCCAACAACACTCTTGCACTTTTTGTTCTTATTCAGTATGTTCCTAGGTTGTTTCTTATCTTTCCTTTGAACCAGCGTATTCAGAAAACCACTGGAGTTATCGCCAAGACTCCCTGGATTGGAGCCGCATACAATCTTGTTCTCTACATGCTAGCTAGTCATGTTACAGGAGCGACTTGGTATCTATCATCAATAGGGAGGCAATTTAGCTGCTGGAAAACGCAGTGCCAACTGGAGAACAAATCCCATACCCTCTCTTGCTTTTCTAGTTATCTTGATTGCAATAGTTTGAACCTCCCTGATAGACAATACTGGCTAAACATCACCCATGTAATCAGCAGATGTGACGCAAAGAGCAAGATCAACATCAAATATAAGTTTGGTATGTTCGCAGATGCTTTCCTCAATGATGTTGTCACTTCCAGTTTCAAGGAAAGATACTTCTATTGTCTTTGGTGGGGTTTGAGAAATTTAAGCTCATATGGACAGAATTTGGACACCACCACATATCTTCCAGAGACACTCTTCTGCATCGTCTTATGCATTGCTGGATTGGTTCTCTTTTCACTTTTGATTGGAAACATGCAGACGTACTTGTCATCAATGTCAGTTAGACTTGAAGAATGGAGGATTCGGAAAAGAGATACTGAAGAGTGGATGAGGCATCGCCAGTTACCACAGGATTTGCAGGAACGTGTCCGTCGTTTTGCTCAATACAAATGGCTTGCAACAAGAGGAGTCAATGAAGAAGCCATACTTCTTTCACTACCTTTGGATCTTCGTCGAGAAATTCAACATCACTTGTGTCTTTCTCTTGTGCGCCGTGTACCCTTCTTCTCACAAATGGATGATCAACTTCTTGATGCTATATGTGAACGGCTTGCGTCATCACTGAGCACCGAAGGAACCTACCTATTTCGAGAGGGTGATCCAGTGGATGAAATGTTGTTTATCATTAGAGGTCAATTGGAGAGCTCCACAACCAACGGAGGAAGGTCTGGATTCTTCAATTCCATCTCACTCCGGCCTGGTGACTTTTGTGGGGAGGAATTGTTGACATGGGCCTTAATGCCAAACTCAAACCTCAACCTACCTTCTTCTACACGCACAGTCAAAGCACTTACTGAAGTTGAAGCTTTTGCACTACAGGCAGAGGATCTGAAATCTGTGGCAAGTCAGTTCAAGCGTCTTCACAGCAAGAAACTTCAGCATGCATTTAGGTACTATTCCCATCAATGGAGGACATGGGCTTCTTGCTTCATACAAGCTGCTTGGAGACGGCATCAGAAGAGAAAAGCAACAAGGGAGTTATCCCTCAAAGAGGGTCTCTACTACCTGGCATTGTCTGAGGCTGAGAGGGATGGAAGTGGAAATTATGAGATCGAGGAATCCTCAGGGAGTGTGAAAAAGGTTCAGAATCTAGGTCCAACTGTTTTTGCCTCAAAGTTTGCTGCCAATACAAAGAAAGGAAACCATAAGCTACAAGATCCTGTGCCCCAATTGTTCAAGCCAGATGAACCTGATTTTTCTCTAGACCACGAACAAGTTTAG
Predicted protein sequences of Glyma.06g077300
>Glyma.06g077300.1.p sequence-type=predicted peptide transcript=Glyma.06g077300.1 locus=Glyma.06g077300 ID=Glyma.06g077300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYRILSTPASKFRQFRRLRSRPKAATATATEEEHAFQILWRYQILDPDSDIVAYWNRVFLVTSLLALFIDPLYFFLPTVGGPACLQADPKLSILVTILRSFADLFYVLHMIMKFRTAFVAPNSRIFGRGELVMDAREIAMRYLKSDFVIDLAATIPLPQIVIWLVIPASRNARTDHANNTLALFVLIQYVPRLFLIFPLNQRIQKTTGVIAKTPWIGAAYNLVLYMLASHVTGATWYLSSIGRQFSCWKTQCQLENKSHTLSCFSSYLDCNSLNLPDRQYWLNITHVISRCDAKSKINIKYKFGMFADAFLNDVVTSSFKERYFYCLWWGLRNLSSYGQNLDTTTYLPETLFCIVLCIAGLVLFSLLIGNMQTYLSSMSVRLEEWRIRKRDTEEWMRHRQLPQDLQERVRRFAQYKWLATRGVNEEAILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLASSLSTEGTYLFREGDPVDEMLFIIRGQLESSTTNGGRSGFFNSISLRPGDFCGEELLTWALMPNSNLNLPSSTRTVKALTEVEAFALQAEDLKSVASQFKRLHSKKLQHAFRYYSHQWRTWASCFIQAAWRRHQKRKATRELSLKEGLYYLALSEAERDGSGNYEIEESSGSVKKVQNLGPTVFASKFAANTKKGNHKLQDPVPQLFKPDEPDFSLDHEQV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo