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Report for Sequence Feature Glyma.06g074900

Feature Type:gene_model
Chromosome:Gm06
Start:5793880
stop:5795448
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g074900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G57560.1AT N-acetyl-l-glutamate kinase JGI N/AIEA
GO:0006526GO-bp arginine biosynthetic process EnsemblGenomesN/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003991GO-mf acetylglutamate kinase activity EnsemblGenomesN/AIEA
GO:0034618GO-mf arginine binding EnsemblGenomesN/AIEA
KOG1154 KOG Gamma-glutamyl kinase JGI N/AIEA
PTHR24802Panther JGI N/AIEA
PTHR24802:SF2Panther JGI N/AIEA
PF00696PFAM Amino acid kinase family JGI N/AIEA
ARGSYN-PWYSoyCyc9 L-arginine biosynthesis I (via L-ornithine) Plant Metabolic Network ISS
ARGSYNBSUB-PWYSoyCyc9 L-arginine biosynthesis II (acetyl cycle) Plant Metabolic Network ISS
GLUTORN-PWYSoyCyc9 L-ornithine biosynthesis I Plant Metabolic Network ISS
GN7V-44718SoyCyc9-rxn acetylglutamate kinase Plant Metabolic Network ISS

Expression Patterns of Glyma.06g074900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g074900 not represented in the dataset
Glyma.06g074900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g074900
ParalogEvidenceComments
Glyma.04g073800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g074900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g07870 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g074900
>Glyma.06g074900.1 sequence-type=CDS polypeptide=Glyma.06g074900.1.p locus=Glyma.06g074900 ID=Glyma.06g074900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGATGGCAGGTGCAGCCAAAACCCTAACCAATCTTTGCCCCTCTTTCCCATTCCCAACCAAACCCCAAAACCAACTCACCACTAGCCACGCTTTCCCTTCCACTCGCCTCCGCCACCGCGCCATTTCCGCGGTGGCGAACGCGGCGCAACCTCCACTCGCCGCCGCCACCGCCACCGAGGGTCAGTACCGAGTCGATGTGCTCTCGGAGTCGCTCCCCTTCATCCAGAAATTCCGCGGCAAAACCATCGTCGTCAAGTACGGCGGCGCCGCCATGAAGTCCCCGGAGCTCCAGGCCTCCGTGATCAACGACCTTGTCCTCCTCTCCTGCGTCGGCCTCCGCCCCGTCCTGGTCCACGGCGGCGGCCCCGAGATCAACTCCTGGCTCGGCCGCCTCAACATCCCCGCCGTCTTCCGCGACGGCCTCCGCGTCACCGACGCCGACACCATGGAGATCGTCTCCATGGTCCTCGTCGGAAAAGTCAACAAAACCCTAGTTTCTCTAATTAACAAGGCCGGCGCCACCGCCGTCGGCCTCTCTGGCATGGACGGCCGCCTCCTCACCGCCCGCCCCGCTCCCAAGGCCGCCGACCTCGGCTACGTCGGCGAGGTCGCACGCGTCGATCCCGCCGTCCTCCGCTCCCTAATCGACACCAGCCACATCCCCGTCGTCACCTCCGTCGCCGCCGATGAATCCGGACAGCCCTACAACATCAACGCCGACACCGTCGCCGGAGAATTGGCAGCGTCGCTCGGCGCGGAGAAGCTGATTCTGCTGACCGATGTGGCGGGAATTCTGGAAGATCGGAACGACCCTGACAGCTTGGTGAAGAAGATTGACATAAAAGGAGTGAAGAAAATGATGGAAGATGGAAAAGTTGGTGGTGGAATGATACCTAAGGTTAATTGTTGCGTTAGGTCCTTGGCGCAAGGGGTTATTACAGCGAGTATTATTGATGGTAGGGTTCCGCATTCTTTGTTGCTTGAGATTTTGACTGATGAAGGTGCTGGAACTATGATAACTGGATAA
Predicted protein sequences of Glyma.06g074900
>Glyma.06g074900.1.p sequence-type=predicted peptide transcript=Glyma.06g074900.1 locus=Glyma.06g074900 ID=Glyma.06g074900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMMAGAAKTLTNLCPSFPFPTKPQNQLTTSHAFPSTRLRHRAISAVANAAQPPLAAATATEGQYRVDVLSESLPFIQKFRGKTIVVKYGGAAMKSPELQASVINDLVLLSCVGLRPVLVHGGGPEINSWLGRLNIPAVFRDGLRVTDADTMEIVSMVLVGKVNKTLVSLINKAGATAVGLSGMDGRLLTARPAPKAADLGYVGEVARVDPAVLRSLIDTSHIPVVTSVAADESGQPYNINADTVAGELAASLGAEKLILLTDVAGILEDRNDPDSLVKKIDIKGVKKMMEDGKVGGGMIPKVNCCVRSLAQGVITASIIDGRVPHSLLLEILTDEGAGTMITG*






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