Glyma.06g069900

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Report for Sequence Feature Glyma.06g069900

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5362065
stop:	5364532
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.06g069900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15680.1	AT	Ran BP2/NZF zinc finger-like superfamily protein	JGI	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
PTHR23111	Panther	ZINC FINGER PROTEIN	JGI	N/A	IEA
PF00641	PFAM	Zn-finger in Ran binding protein and others	JGI	N/A	IEA

Expression Patterns of Glyma.06g069900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.06g069900

Paralog	Evidence	Comments
Glyma.04g068400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g069900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma06g07350	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.06g069900

Limit To All Plant Sequences

>Glyma.06g069900.2 sequence-type=transcript locus=Glyma.06g069900 ID=Glyma.06g069900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACCACAAACCACAATTAAACAACACACTCTCCTTATTCAACTTGTGGAGCTACTTCCACCCACTATCTACCTTCATTTTATTTTCAGTCTCCAAACTCCAAAGGGAAAATGAACAGACCAGGAGATTGGAACTGCAGGACATGCAACCACCTGAACTTCCAGAGAAGAGAATCATGTCAGCGATGCGGGGAGCCGAGGAGTggcggcggcgactacggtggcggcttcggtgggggcagaggcTCTTCCTCCTTTGGCGGATTCACCACTGGCCCGGATGTTCGCCCCGGTGACTGGTACTGCACCGTCGGAAACTGTGGAGCCCACAACTTTGCCAGCCGCTCCAGCTGCTTCAAGTGCGGTGCCCCCAAGGAGGACTCCTCCGCCGGCCCATTCGACGTCGACATGCCCCGAATGAGACCCTTCGGCTTTggcggcagcggcggcggcggcTCCTCTGCTCGCCCTGGCTGGAAATCCGGTGACTGGATATGCACCAGGTCAGGATGCAACGAGCATAACTTCGCCAATAGAATGGAGTGCTACCGATGCAATGCACCGAGGGACTCCAGTAGTGCCAGGTCTCCCTATTCATCGTAGAGTTCCTGATCATTTGATGTGGTAATTGTTTGCTGTCCAAGGAGAGAATCGAGAGGCTATCCCTATTTCCTAGTGATAGTTTACttttttttttttttttgttCACTTGCTTCCATATGTTACTTTCTTCATCATCTCATGCGGATATTTATTTTTGCTTTTTTGATTTTCTTCCAGCTAGGAAGCTTTAGGTGAATTATGATTTTGAGGTTTTGTTGGCGCTGAGTGATTCTGGTATATGATGACTCAGCAGCTAGCCCATGTACTTTTATAAGTATCAACAATTTAATATGAGTACGTGTTAATGTGTTTCGAGAGGGGGCTAGCTTCTAAGCCTCATCATCACTATGATTTGGTGCAAAGATGTTCTTTATCTAATTCTCCGATATGTGTTCAGAAAAGATGCTCTTTGCTTCTGTCTTTCTCTCTTTAACTCTCAGATATACACATATATATAGCTTTATAGTGGGG

Coding sequences of Glyma.06g069900

Limit To All Plant Sequences

>Glyma.06g069900.1 sequence-type=CDS polypeptide=Glyma.06g069900.1.p locus=Glyma.06g069900 ID=Glyma.06g069900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACAGACCAGGAGATTGGAACTGCAGGACATGCAACCACCTGAACTTCCAGAGAAGAGAATCATGTCAGCGATGCGGGGAGCCGAGGAGTGGCGGCGGCGACTACGGTGGCGGCTTCGGTGGGGGCAGAGGCTCTTCCTCCTTTGGCGGATTCACCACTGGCCCGGATGTTCGCCCCGGTGACTGGTACTGCACCGTCGGAAACTGTGGAGCCCACAACTTTGCCAGCCGCTCCAGCTGCTTCAAGTGCGGTGCCCCCAAGGAGGACTCCTCCGCCGGCCCATTCGACGTCGACATGCCCCGAATGAGACCCTTCGGCTTTGGCGGCAGCGGCGGCGGCGGCTCCTCTGCTCGCCCTGGCTGGAAATCCGGTGACTGGATATGCACCAGGTCAGGATGCAACGAGCATAACTTCGCCAATAGAATGGAGTGCTACCGATGCAATGCACCGAGGGACTCCAGTAGTGCCAGGTCTCCCTATTCATCGTAG

>Glyma.06g069900.2 sequence-type=CDS polypeptide=Glyma.06g069900.2.p locus=Glyma.06g069900 ID=Glyma.06g069900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACAGACCAGGAGATTGGAACTGCAGGACATGCAACCACCTGAACTTCCAGAGAAGAGAATCATGTCAGCGATGCGGGGAGCCGAGGAGTGGCGGCGGCGACTACGGTGGCGGCTTCGGTGGGGGCAGAGGCTCTTCCTCCTTTGGCGGATTCACCACTGGCCCGGATGTTCGCCCCGGTGACTGGTACTGCACCGTCGGAAACTGTGGAGCCCACAACTTTGCCAGCCGCTCCAGCTGCTTCAAGTGCGGTGCCCCCAAGGAGGACTCCTCCGCCGGCCCATTCGACGTCGACATGCCCCGAATGAGACCCTTCGGCTTTGGCGGCAGCGGCGGCGGCGGCTCCTCTGCTCGCCCTGGCTGGAAATCCGGTGACTGGATATGCACCAGGTCAGGATGCAACGAGCATAACTTCGCCAATAGAATGGAGTGCTACCGATGCAATGCACCGAGGGACTCCAGTAGTGCCAGGTCTCCCTATTCATCGTAG

Predicted protein sequences of Glyma.06g069900

Limit To All Plant Sequences

>Glyma.06g069900.1.p sequence-type=predicted peptide transcript=Glyma.06g069900.1 locus=Glyma.06g069900 ID=Glyma.06g069900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGGDYGGGFGGGRGSSSFGGFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKEDSSAGPFDVDMPRMRPFGFGGSGGGGSSARPGWKSGDWICTRSGCNEHNFANRMECYRCNAPRDSSSARSPYSS*

>Glyma.06g069900.2.p sequence-type=predicted peptide transcript=Glyma.06g069900.2 locus=Glyma.06g069900 ID=Glyma.06g069900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGGDYGGGFGGGRGSSSFGGFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKEDSSAGPFDVDMPRMRPFGFGGSGGGGSSARPGWKSGDWICTRSGCNEHNFANRMECYRCNAPRDSSSARSPYSS*

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