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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT2G45700.1 | AT | sterile alpha motif (SAM) domain-containing protein | JGI | N/A | IEA |
GO:0006303 | GO-bp | double-strand break repair via nonhomologous end joining | EnsemblGenomes | N/A | IEA |
GO:0031848 | GO-bp | protection from non-homologous end joining at telomere | EnsemblGenomes | N/A | IEA |
GO:0036297 | GO-bp | interstrand cross-link repair | EnsemblGenomes | N/A | IEA |
GO:0090305 | GO-bp | nucleic acid phosphodiester bond hydrolysis | EnsemblGenomes | N/A | IEA |
GO:0000784 | GO-cc | nuclear chromosome, telomeric region | EnsemblGenomes | N/A | IEA |
GO:0003684 | GO-mf | damaged DNA binding | EnsemblGenomes | N/A | IEA |
GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
GO:0035312 | GO-mf | 5'-3' exodeoxyribonuclease activity | EnsemblGenomes | N/A | IEA |
KOG1361 | KOG | Predicted hydrolase involved in interstrand cross-link repair | JGI | N/A | IEA |
PTHR23240 | Panther | DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED | JGI | N/A | IEA |
PTHR23240:SF1 | Panther | JGI | N/A | IEA | |
PF00536 | PFAM | SAM domain (Sterile alpha motif) | JGI | N/A | IEA |
PF07522 | PFAM | DNA repair metallo-beta-lactamase | JGI | N/A | IEA |
Glyma.06g058300 not represented in the dataset |
Glyma.06g058300 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma06g06090 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g058300.1 sequence-type=CDS polypeptide=Glyma.06g058300.1.p locus=Glyma.06g058300 ID=Glyma.06g058300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATTTCCACCATGAGTTGGGATGAGAACAACGATGAATTTGAGATCCCTCTCACTCAAACGACAACGGCTTTTCACGCGGCTCTTGCTTCCATTGATGATGATAATAATCAACGGCCGTCGAAAAAACCTAAACGCAAAACGAGCGAGGGTGGTTGCGAAATTGATAACTGCTGCAGCTTGGATTTCATTCCTTCCACCATAGGTTGTGTTTCTGCTTGCAGTGTTCAACCGTTGGGAGAAGAGGACAGTGTTTCTCCTTCTTCTTCTACTGCGTCTTTGTCGGAGCTGAAAACGAAGGGGAATTATCTTCGCAACTCGATAGAGTCGAAGCTGGTGGTTTCGAGAGCCAACGCGCTTAACCGTGCAGATGCAGACTCTGATTCGGAGCTTGATCTGTTGATGAATTTGTGCGATGAGTTGGAGGAAGTAGATAGTTCCGTTCGGTGTCCCCTGTGTGAGGTTGATATTTCGAACTTGACCGAGGAACAGCGGCATCTTCATACCAACAATTGTCTTGACGACGTTGCGGTGGTTCCTGATGATAACGAGAAAGGTGCTCAACAAGTGCCTAAAGTTGCTTCTGTGGTTGATTGGCTACGCGGGCTCGGCTTAAACAAGTATGAAGATGTTTTCGTTAGGGAAGAAGTTGATTGGGACACCTTGCAGTGGCTCACAGAAGAGGATCTCTTAAGCATGGGTATTGCTGCACTTGGGCCGAGAAGAAAGATTGTGCATGCCCTGAGTGAACTTAGAAAAGGAGATGCTGCTGCAAATGAGAAACATGAGGATTCTTCGGCGGAGCCTAGAAGGATTAGAAACCAGAAAGTCAAATTAAAACATGACAAGTCTGAAAGAAAAGTTGATGGCACTGGTAAACCAGTGGCAAACAAATTAATCACTGAATATTTTCCGGGATTTGCTTCCAAAGAAAAGAAAGTTTCTGCCTCTCCCGGAGAACCACAGGAAAAGAAAAACAGTGGCTTGGATTCTGGTCGTAAGCACAAATCAAAAAATACGCCAACAAATAGAAAGCTCCGTGATGTTCCCAAATGGTGTGCCGTCCAAGGAACGCCTTTCCGAGTGGATGCTTTCAAATATCTCAGAGGAGATTGTTCTCACTGGTTTCTCACACACTTCCACTTGGACCATTATCAAGGTCTCACCAAGTCATTCAATCATGGAAAGATCTATTGCTCCTCAGTTACAGCTAGACTTGTAAATATGAACATTGGAATTCCATATGATAAATTACATGTTTTGCCTCTGAACCAAAAGGTTGAAATAGCTGGTGTTGATGTGACTTGCTTGGATGCCAACCATTGTCCAGGTTCCATAATCATACTCTTTCAACCTCCAAATGGTAAGGCGGTGCTTCACACGGGTGATTTCCGCTTTAGTGAAGAAATGGCTGTCAATCCTTTAATGCGAATATGTCCTATCAATACTCTGATTCTTGATACAACATACTGCAACCCACAGTATGACTTTCCAAAACAAGAGTCTGTAATACAATTCGTTATTGATGCTGTTCAAGCAGAAACTTTTAATCCCAAGACCCTTTTTCTGATCGGCAGCTATACAATTGGCAAAGAAAGATTATTCTTGGAGGTTGCTCGTTCGCTTCGTAAAAAGGTTCACGTTACTGCTGCGAAGTTGCGTATTTTAAAATGTTTGGAATTGAAGGAGGAGGATATGCAGTGGTTCACTTCAAATGAACATGAAAGCAACATTCATGTTGCCCCTATGTGGACGCTGGCGAGCTTCAAAAGATTGAAGCACATATCAAGTCAATATAAGAGTCAGTACAATCTTATAGTTGCTTTCTCTCCCACTGGTTGGACGTTTGGCAAAGGTAAAAAGAAGTCAACGGGAAGGAGATGGCAGCAGGGTACTATTATAAGGTATGAAGTGCCATACAGTGAGCATAGCAGCTTTACAGAACTCAAAGAGTTTGTAAGAGTTGTATCTCCTGATAACATTATACCAAGTGTGAATAATGATGGACCAGAATCTTCTGATGCAATGATTTCTCTGTTGTTATCTTGA
>Glyma.06g058300.1.p sequence-type=predicted peptide transcript=Glyma.06g058300.1 locus=Glyma.06g058300 ID=Glyma.06g058300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MISTMSWDENNDEFEIPLTQTTTAFHAALASIDDDNNQRPSKKPKRKTSEGGCEIDNCCSLDFIPSTIGCVSACSVQPLGEEDSVSPSSSTASLSELKTKGNYLRNSIESKLVVSRANALNRADADSDSELDLLMNLCDELEEVDSSVRCPLCEVDISNLTEEQRHLHTNNCLDDVAVVPDDNEKGAQQVPKVASVVDWLRGLGLNKYEDVFVREEVDWDTLQWLTEEDLLSMGIAALGPRRKIVHALSELRKGDAAANEKHEDSSAEPRRIRNQKVKLKHDKSERKVDGTGKPVANKLITEYFPGFASKEKKVSASPGEPQEKKNSGLDSGRKHKSKNTPTNRKLRDVPKWCAVQGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSVTARLVNMNIGIPYDKLHVLPLNQKVEIAGVDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFSEEMAVNPLMRICPINTLILDTTYCNPQYDFPKQESVIQFVIDAVQAETFNPKTLFLIGSYTIGKERLFLEVARSLRKKVHVTAAKLRILKCLELKEEDMQWFTSNEHESNIHVAPMWTLASFKRLKHISSQYKSQYNLIVAFSPTGWTFGKGKKKSTGRRWQQGTIIRYEVPYSEHSSFTELKEFVRVVSPDNIIPSVNNDGPESSDAMISLLLS*
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