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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G43920.2 | AT | dicer-like 3 | JGI | N/A | IEA |
GO:0006396 | GO-bp | RNA processing | EnsemblGenomes | N/A | IEA |
GO:0006396 | GO-bp | RNA processing | JGI | N/A | IEA |
GO:0030422 | GO-bp | production of siRNA involved in RNA interference | EnsemblGenomes | N/A | IEA |
GO:0090501 | GO-bp | RNA phosphodiester bond hydrolysis | EnsemblGenomes | N/A | IEA |
GO:0090502 | GO-bp | RNA phosphodiester bond hydrolysis, endonucleolytic | EnsemblGenomes | N/A | IEA |
GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
GO:0016442 | GO-cc | RISC complex | EnsemblGenomes | N/A | IEA |
GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
GO:0003723 | GO-mf | RNA binding | JGI | N/A | IEA |
GO:0004525 | GO-mf | ribonuclease III activity | EnsemblGenomes | N/A | IEA |
GO:0004525 | GO-mf | ribonuclease III activity | JGI | N/A | IEA |
GO:0016891 | GO-mf | endoribonuclease activity, producing 5'-phosphomonoesters | EnsemblGenomes | N/A | IEA |
PTHR14950 | Panther | HELICASE-RELATED | JGI | N/A | IEA |
PTHR14950:SF1 | Panther | JGI | N/A | IEA | |
PF00035 | PFAM | Double-stranded RNA binding motif | JGI | N/A | IEA |
PF00636 | PFAM | Ribonuclease III domain | JGI | N/A | IEA |
Glyma.06g058000 not represented in the dataset |
Glyma.06g058000 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.04g057400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma06g06061 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g058000.2 sequence-type=transcript locus=Glyma.06g058000 ID=Glyma.06g058000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 CAACATGAAACCCACTTGAGTGAATACTTGACTACTTCACATTCACACTCACTTTTCAGTTTCTGTTCTGCGTAGGTTGCAACCTACCTAGTAATCAGAACCAAAGTAGAAAACGAATGGAACCCGATGGCGATGATTTTCCATCGTTGGATTTCGACATTGATTCACCAGACCATAGACAGGACCAAAGTAAAAAACGAAAGCATACTGATAATTATGCGTCTCTGGAATCGCCTTGTTCCAACACGAACCCCAGAGGCTATCAGATAGAGGTGTATGAAGTTGCAAGGAGAAGGAACACAATAGCTGTGTTGGATACAGGGTCTGGTAAGACCTTGAATGCTGTAATGCTCATGAAAGAGGTGGGTTAAGCCATCAAGACTAGTGGTGTAAAGAAGCTGATTCTTTTCTTGGCTCCCACAGTTCATCTTGTCAACCAGCAATTCAAGAATATGAAATTTCTGACTGATTTTCAAGTTGAGGAATACTATGGAGCTAAAGGAGTTGATACATGGAGTTTGAAGATGTGGGAGAAAGTGATTAGTAACAATGATGAGTAATGACTATCTTGGGAAGTTTTTCGCTGGATGTGTTCTTAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTAGATGGTGGACTCTTTGCTTCACTTAATGTGATGAAATGGCTTGGGATTGGTGTTGAACTTGAACTATCATCACTTGATGAAGCAATCACTGCTGCATCTCTGAGTACATGTGTGCCAATAGAAAGTGATATTGCAAGCCTTGAAAAGAAAATTGAGTATGAATTTTCAGTCAAGGGACTCTTACTGGAGGCAATCACACATTTGTCTGAGAAAGAACTTGGGATTGGCTGCTGTTATGAGAGGCTTAAATTTCTTGGTGACTCGGTATTGGACCTGCTTATCACATGGCATCTTTATCAGAGTCACACAGATATTGATCCAGGGGTGTTGGCTGACTTACGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCTGTTAGACATAACCTTCACCAGCACCTTCTACATAGCTCAGGATTATTAGTGAGCCAGATATTAGAATATGTGAAGGTCATTTCTGAATCAGATCCCAGATCACTTCCAAGTATTAGAGCTCCCAAGGCACTTGGAGATGTAGTGGAAAGTATTGTCGGGCCTATACTAATTGGTACCAAGCTAAGTCTTGACCAAGTGTGGAACGTTTTCTATCCTCTATTATCTCCCATTGTTACTCCTGATAAACTTGAATTGCCTCCATTTCGTGAATTAAATGAATTATGTGATTCACTTGGGCATTTTGTAAAAGTAAAAGAAAATTGTGAAAAAATGGGATCAGCAATGCATGTTGAGGTTAGTGTACAGCTTCCAAATGCCCTATTGGTTCGTGAAGGAAAGGGGCCAAATAAAAAAACTGCAAAAGGAGAAGCTGCTTTTCATTTGTTGAAGGATCTTGAGAAGCGGGGAATTTTACATGGTAGTCTCATGTCCAAGGGAAAAAGAGACAATCCTGACCATATCTATGATTCATTTCATCTCAAAAGGGATTCTAGTATTTGTTCTTCTCTAATTGAAGAACATTCCTCAGAGCCAGCATCACATAAAAGGCACACATTGGATGAAACTAACTTAACTGCATTTAATTGATCAATGAATATGAAAGGGAGGACCACGGACCACACTATATGATGTATGTAAGAAATTACAGTGGCCAGTGCCTGCATTTGATTCAAGAGAATATAAAGATAGATAATATTTTGTTCTAGAATCGGTAGTGCTGTGACATGTGAATCGGACAAGTTTTTATTTTGTCACAGATCTCTATTTGAATCCTGTGAAGGGCTGCAAGGAAGCAAGGGACAAAACTGTTTCTTTGTCGAAAATTACCTTGTGCATACCCAATTATGGTAATATAGAATGCAAAGGAGAAGCTAGAAGTGATAAGAAGAGCTCCTTTGACTCTGCTGCAATTTAAATGCTGCGTGTGGGCCGGGTGGACCTTTGAAGTATGAATATGGTAATTTTAGTTATTTATTGTTATCTTTTGTGTGCTATTTCTTATTTTTATAATACATGGAAGTATTTATCTAGATTTTTTATGATGTATACTATATTTACAATTATTTATGGTGTATAGTATATTTACAATTATAAAATTAACCTAGCTAACTAAT >Glyma.06g058000.3 sequence-type=transcript locus=Glyma.06g058000 ID=Glyma.06g058000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 CAACATGAAACCCACTTGAGTGAATACTTGACTACTTCACATTCACACTCACTTTTCAGTTTCTGTTCTGCGTAGGTTGCAACCTACCTAGTAATCAGAACCAAAGTAGAAAACGAATGGAACCCGATGGCGATGATTTTCCATCGTTGGATTTCGACATTGATTCACCAGACCATAGACAGGACCAAAGTAAAAAACGAAAGCATACTGATAATTATGCGTCTCTGGAATCGCCTTGTTCCAACACGAACCCCAGAGGCTATCAGATAGAGGTGTATGAAGTTGCAAGGAGAAGGAACACAATAGCTGTGTTGGATACAGGGTCTGGTAAGACCTTGAATGCTGTAATGCTCATGAAAGAGGTGGGTTAAGCCATCAAGACTAGTGGTGTAAAGAAGCTGATTCTTTTCTTGGCTCCCACAGTTCATCTTGTCAACCAGCAATTCAAGAATATGAAATTTCTGACTGATTTTCAAGTTGAGGAATACTATGGAGCTAAAGGAGTTGATACATGGAGTTTGAAGATGTGGGAGAAAGTGATTAGTAACAATGATGAGTAATGACTATCTTGGGAAGTTTTTCGCTGGATGTGTTCTTAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTAGATGGTGGACTCTTTGCTTCACTTAATGTGATGAAATGGCTTGGGATTGGTGTTGAACTTGAACTATCATCACTTGATGAAGCAATCACTGCTGCATCTCTGAGTACATGTGTGCCAATAGAAAGTGATATTGCAAGCCTTGAAAAGAAAATTGAGTATGAATTTTCAGTCAAGGGACTCTTACTGGAGGCAATCACACATTTGTCTGAGAAAGAACTTGGGATTGGCTGCTGTTATGAGAGGCTTAAATTTCTTGGTGACTCGGTATTGGACCTGCTTATCACATGGCATCTTTATCAGAGTCACACAGATATTGATCCAGGGGTGTTGGCTGACTTACGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCTGTTAGACATAACCTTCACCAGCACCTTCTACATAGCTCAGGATTATTAGTGAGCCAGATATTAGAATATGTGAAGGTCATTTCTGAATCAGATCCCAGATCACTTCCAAGTATTAGAGCTCCCAAGGCACTTGGAGATGTAGTGGAAAGTATTGTCGGGCCTATACTAATTGGTACCAAGCTAAGTCTTGACCAAGTGTGGAACGTTTTCTATCCTCTATTATCTCCCATTGTTACTCCTGATAAACTTGAATTGCCTCCATTTCGTGAATTAAATGAATTATGTGATTCACTTGGGCATTTTGTAAAAGTAAAAGAAAATTGTGAAAAAATGGGATCAGCAATGCATGTTGAGGTTAGTGTACAGCTTCCAAATGCCCTATTGGTTCGTGAAGGAAAGGGGCCAAATAAAAAAACTGCAAAAGGAGAAGCTGCTTTTCATTTGTTGAAGGATCTTGAGAAGCGGGGAATTTTACATGGTAGTCTCATGTCCAAGGGAAAAAGAGACAATCCTGACCATATCTATGATTCATTTCATCTCAAAAGGGATTCTAGTATTTGTTCTTCTCTAATTGAAGAACATTCCTCAGAGCCAGCATCACATAAAAGGCACACATTGGATGAAACTAACTTAACTGCATTTAATTGATCAATGAATATGAAAGGGAGGACCACGGACCACACTATATGATGTATGTAAGAAATTACAGTGGCCAGTGCCTGCATTTGATTCAAGAGAATATAAAGATAGATCTCTATTTGAATCCTGTGAAGGGCTGCAAGGAAGCAAGGGACAAAACTGTTTCTTTGTCGAAAATTACCTTGTGCATACCCAATTATGGTAATATAGAATGCAAAGGAGAAGCTAGAAGTGATAAGAAGAGCTCCTTTGACTCTGCTGCAATTTAAATGCTGCGTGTGGGCCGGGTGGACCTTTGAAGTATGAATATGGTAATTTTAGTTATTTATTGTTATCTTTTGTGTGCTATTTCTTATTTTTATAATACATGGAAGTATTTATCTAGATTTTTTATGATGTATACTATATTTACAATTATTTATGGTGTATAGTATATTTACAATTATAAAATTAACCTAGCTAACTAAT
>Glyma.06g058000.1 sequence-type=CDS polypeptide=Glyma.06g058000.1.p locus=Glyma.06g058000 ID=Glyma.06g058000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAATTTCTGACTGATTTTCAAGTTGAGGAATACTATGGAGCTAAAGGAGTTGATACATGGAGTTTGAAGATGTGGGAGAAAGTGATTAGTAACAATGATACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTAGATGGTGGACTCTTTGCTTCACTTAATGTGATGAAATGGCTTGGGATTGGTGTTGAACTTGAACTATCATCACTTGATGAAGCAATCACTGCTGCATCTCTGAGTACATGTGTGCCAATAGAAAGTGATATTGCAAGCCTTGAAAAGAAAATTGAGTATGAATTTTCAGTCAAGGGACTCTTACTGGAGGCAATCACACATTTGTCTGAGAAAGAACTTGGGATTGGCTGCTGTTATGAGAGGCTTAAATTTCTTGGTGACTCGGTATTGGACCTGCTTATCACATGGCATCTTTATCAGAGTCACACAGATATTGATCCAGGGGTGTTGGCTGACTTACGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCTGTTAGACATAACCTTCACCAGCACCTTCTACATAGCTCAGGATTATTAGTGAGCCAGATATTAGAATATGTGAAGGTCATTTCTGAATCAGATCCCAGATCACTTCCAAGTATTAGAGCTCCCAAGGCACTTGGAGATGTAGTGGAAAGTATTGTCGGGCCTATACTAATTGGTACCAAGCTAAGTCTTGACCAAGTGTGGAACGTTTTCTATCCTCTATTATCTCCCATTGTTACTCCTGATAAACTTGAATTGCCTCCATTTCGTGAATTAAATGAATTATGTGATTCACTTGGGCATTTTGTAAAAGTAAAAGAAAATTGTGAAAAAATGGGATCAGCAATGCATGTTGAGGTTAGTGTACAGCTTCCAAATGCCCTATTGGTTCGTGAAGGAAAGGGGCCAAATAAAAAAACTGCAAAAGGAGAAGCTGCTTTTCATTTGTTGAAGGATCTTGAGAAGCGGGGAATTTTACATGGTAGTCTCATGTCCAAGGGAAAAAGAGACAATCCTGACCATATCTATGATTCATTTCATCTCAAAAGGGATTCTAGTATTTGTTCTTCTCTAATTGAAGAACATTCCTCAGAGCCAGCATCACATAAAAGGCACACATTGGATGAAACTAACTTAACTGCATCTATTCAGTTCTGTGAGACATCTGAATTGATCACTCCTGCTGTAGCATTCATTAACCAAATCATAGATAATGCTATGAGTGTTGGAGGACCACGGACCACACTATATGATGTATGTAAGAAATTACAGTGGCCAGTGCCTGCATTTGATTCAAGAGAATATAAAGATAGTTTTTATTTTGTCACAGATCTCTATTTGAATCCTGTGAAGGGCTGCAAGGAAGCAAGGGACAAAACTGTTTCTTTGTCGAAAATTACCTTGTGCATACCCAATTATGGTAATATAGAATGCAAAGGAGAAGCTAGAAGTGATAAGAAGAGCTCCTTTGACTCTGCTGCAATTTAA >Glyma.06g058000.2 sequence-type=CDS polypeptide=Glyma.06g058000.2.p locus=Glyma.06g058000 ID=Glyma.06g058000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATGAGTAATGACTATCTTGGGAAGTTTTTCGCTGGATGTGTTCTTAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTAGATGGTGGACTCTTTGCTTCACTTAATGTGATGAAATGGCTTGGGATTGGTGTTGAACTTGAACTATCATCACTTGATGAAGCAATCACTGCTGCATCTCTGAGTACATGTGTGCCAATAGAAAGTGATATTGCAAGCCTTGAAAAGAAAATTGAGTATGAATTTTCAGTCAAGGGACTCTTACTGGAGGCAATCACACATTTGTCTGAGAAAGAACTTGGGATTGGCTGCTGTTATGAGAGGCTTAAATTTCTTGGTGACTCGGTATTGGACCTGCTTATCACATGGCATCTTTATCAGAGTCACACAGATATTGATCCAGGGGTGTTGGCTGACTTACGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCTGTTAGACATAACCTTCACCAGCACCTTCTACATAGCTCAGGATTATTAGTGAGCCAGATATTAGAATATGTGAAGGTCATTTCTGAATCAGATCCCAGATCACTTCCAAGTATTAGAGCTCCCAAGGCACTTGGAGATGTAGTGGAAAGTATTGTCGGGCCTATACTAATTGGTACCAAGCTAAGTCTTGACCAAGTGTGGAACGTTTTCTATCCTCTATTATCTCCCATTGTTACTCCTGATAAACTTGAATTGCCTCCATTTCGTGAATTAAATGAATTATGTGATTCACTTGGGCATTTTGTAAAAGTAAAAGAAAATTGTGAAAAAATGGGATCAGCAATGCATGTTGAGGTTAGTGTACAGCTTCCAAATGCCCTATTGGTTCGTGAAGGAAAGGGGCCAAATAAAAAAACTGCAAAAGGAGAAGCTGCTTTTCATTTGTTGAAGGATCTTGAGAAGCGGGGAATTTTACATGGTAGTCTCATGTCCAAGGGAAAAAGAGACAATCCTGACCATATCTATGATTCATTTCATCTCAAAAGGGATTCTAGTATTTGTTCTTCTCTAATTGAAGAACATTCCTCAGAGCCAGCATCACATAAAAGGCACACATTGGATGAAACTAACTTAACTGCATTTAATTGA >Glyma.06g058000.3 sequence-type=CDS polypeptide=Glyma.06g058000.3.p locus=Glyma.06g058000 ID=Glyma.06g058000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATGAGTAATGACTATCTTGGGAAGTTTTTCGCTGGATGTGTTCTTAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTAGATGGTGGACTCTTTGCTTCACTTAATGTGATGAAATGGCTTGGGATTGGTGTTGAACTTGAACTATCATCACTTGATGAAGCAATCACTGCTGCATCTCTGAGTACATGTGTGCCAATAGAAAGTGATATTGCAAGCCTTGAAAAGAAAATTGAGTATGAATTTTCAGTCAAGGGACTCTTACTGGAGGCAATCACACATTTGTCTGAGAAAGAACTTGGGATTGGCTGCTGTTATGAGAGGCTTAAATTTCTTGGTGACTCGGTATTGGACCTGCTTATCACATGGCATCTTTATCAGAGTCACACAGATATTGATCCAGGGGTGTTGGCTGACTTACGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCTGTTAGACATAACCTTCACCAGCACCTTCTACATAGCTCAGGATTATTAGTGAGCCAGATATTAGAATATGTGAAGGTCATTTCTGAATCAGATCCCAGATCACTTCCAAGTATTAGAGCTCCCAAGGCACTTGGAGATGTAGTGGAAAGTATTGTCGGGCCTATACTAATTGGTACCAAGCTAAGTCTTGACCAAGTGTGGAACGTTTTCTATCCTCTATTATCTCCCATTGTTACTCCTGATAAACTTGAATTGCCTCCATTTCGTGAATTAAATGAATTATGTGATTCACTTGGGCATTTTGTAAAAGTAAAAGAAAATTGTGAAAAAATGGGATCAGCAATGCATGTTGAGGTTAGTGTACAGCTTCCAAATGCCCTATTGGTTCGTGAAGGAAAGGGGCCAAATAAAAAAACTGCAAAAGGAGAAGCTGCTTTTCATTTGTTGAAGGATCTTGAGAAGCGGGGAATTTTACATGGTAGTCTCATGTCCAAGGGAAAAAGAGACAATCCTGACCATATCTATGATTCATTTCATCTCAAAAGGGATTCTAGTATTTGTTCTTCTCTAATTGAAGAACATTCCTCAGAGCCAGCATCACATAAAAGGCACACATTGGATGAAACTAACTTAACTGCATTTAATTGA
>Glyma.06g058000.1.p sequence-type=predicted peptide transcript=Glyma.06g058000.1 locus=Glyma.06g058000 ID=Glyma.06g058000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKFLTDFQVEEYYGAKGVDTWSLKMWEKVISNNDTIADCVEALIGAYYVDGGLFASLNVMKWLGIGVELELSSLDEAITAASLSTCVPIESDIASLEKKIEYEFSVKGLLLEAITHLSEKELGIGCCYERLKFLGDSVLDLLITWHLYQSHTDIDPGVLADLRSASVNNDNFAQVAVRHNLHQHLLHSSGLLVSQILEYVKVISESDPRSLPSIRAPKALGDVVESIVGPILIGTKLSLDQVWNVFYPLLSPIVTPDKLELPPFRELNELCDSLGHFVKVKENCEKMGSAMHVEVSVQLPNALLVREGKGPNKKTAKGEAAFHLLKDLEKRGILHGSLMSKGKRDNPDHIYDSFHLKRDSSICSSLIEEHSSEPASHKRHTLDETNLTASIQFCETSELITPAVAFINQIIDNAMSVGGPRTTLYDVCKKLQWPVPAFDSREYKDSFYFVTDLYLNPVKGCKEARDKTVSLSKITLCIPNYGNIECKGEARSDKKSSFDSAAI* >Glyma.06g058000.2.p sequence-type=predicted peptide transcript=Glyma.06g058000.2 locus=Glyma.06g058000 ID=Glyma.06g058000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MMSNDYLGKFFAGCVLKTIADCVEALIGAYYVDGGLFASLNVMKWLGIGVELELSSLDEAITAASLSTCVPIESDIASLEKKIEYEFSVKGLLLEAITHLSEKELGIGCCYERLKFLGDSVLDLLITWHLYQSHTDIDPGVLADLRSASVNNDNFAQVAVRHNLHQHLLHSSGLLVSQILEYVKVISESDPRSLPSIRAPKALGDVVESIVGPILIGTKLSLDQVWNVFYPLLSPIVTPDKLELPPFRELNELCDSLGHFVKVKENCEKMGSAMHVEVSVQLPNALLVREGKGPNKKTAKGEAAFHLLKDLEKRGILHGSLMSKGKRDNPDHIYDSFHLKRDSSICSSLIEEHSSEPASHKRHTLDETNLTAFN* >Glyma.06g058000.3.p sequence-type=predicted peptide transcript=Glyma.06g058000.3 locus=Glyma.06g058000 ID=Glyma.06g058000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 MMSNDYLGKFFAGCVLKTIADCVEALIGAYYVDGGLFASLNVMKWLGIGVELELSSLDEAITAASLSTCVPIESDIASLEKKIEYEFSVKGLLLEAITHLSEKELGIGCCYERLKFLGDSVLDLLITWHLYQSHTDIDPGVLADLRSASVNNDNFAQVAVRHNLHQHLLHSSGLLVSQILEYVKVISESDPRSLPSIRAPKALGDVVESIVGPILIGTKLSLDQVWNVFYPLLSPIVTPDKLELPPFRELNELCDSLGHFVKVKENCEKMGSAMHVEVSVQLPNALLVREGKGPNKKTAKGEAAFHLLKDLEKRGILHGSLMSKGKRDNPDHIYDSFHLKRDSSICSSLIEEHSSEPASHKRHTLDETNLTAFN*
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