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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G21930.1 | AT | P-type ATPase of Arabidopsis 2 | JGI | N/A | IEA |
| GO:0006812 | GO-bp | cation transport | EnsemblGenomes | N/A | IEA |
| GO:0030001 | GO-bp | metal ion transport | EnsemblGenomes | N/A | IEA |
| GO:0030001 | GO-bp | metal ion transport | JGI | N/A | IEA |
| GO:0099132 | GO-bp | ATP hydrolysis coupled cation transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0009536 | GO-cc | plastid | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0019829 | GO-mf | cation-transporting ATPase activity | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | JGI | N/A | IEA |
| KOG0207 | KOG | Cation transport ATPase | JGI | N/A | IEA |
| PTHR24093 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PTHR24093:SF26 | Panther | JGI | N/A | IEA | |
| PF00122 | PFAM | E1-E2 ATPase | JGI | N/A | IEA |
| PF00403 | PFAM | Heavy-metal-associated domain | JGI | N/A | IEA |
| PF00702 | PFAM | haloacid dehalogenase-like hydrolase | JGI | N/A | IEA |
| PWY-6135 | SoyCyc9 | copper transport I | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| HMA8 | chloroplast copper-translocating HMA8 P-ATPase |
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Glyma.06g056300 not represented in the dataset |
Glyma.06g056300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.04g056100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma06g05890 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g056300.1 sequence-type=CDS polypeptide=Glyma.06g056300.1.p locus=Glyma.06g056300 ID=Glyma.06g056300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTACTCATCTTTTCAGACTTCCTCTCTTCTCGCAACCCAAGCTCTCCTTCAATCACACGCCTAATCATGCACTCCACTTCATTTCTCCTCTGCCGGCAAAACGACATCGCACCCGCAACCGCCACCGTCGTCGAATTCTCCGGCCACCGTTCTCTGTTTCGAACTCCTTCGGCACCGAGATTGGCTCGCCGGAATTTTCTCTCCTTCAAAGCAGGAGAGAGGCCAAAGACTCGCCGGTTCTGCTCGACGTCACCGGAATGATGTGCGGCGCGTGCGTCTCCCGAGTCAAAAACATCCTCTCCGCTGACGACCGAGTTGACTCGGTCGTGGTCAACATGTTGACCGAGACCGCCGCCGTCAAGCTGCGGCGGATCGAGGAGGAACCGGCGAGCGTCGCGGAGAGCCTCGCTCTGAGACTGAGCGATTGCGGATTTCCGACGAAGAGGAGGGCGTCGAGCTCGGGAGTGACGGAAAACGTGAGGAAGTGGAAGGAGTTGGTGAAGAAGAAGGAGGAATTGGTCGTTAAGAGTCGAAGCCGCGTCGCGTTCGCTTGGACATTGGTCGCATTGTGCTGCGGATCGCACGCTTCGCATATTTTCCACTCCTTGGGGATTCACATTGCTCACGGACCGCTTATGGAGATTCTTCATAGTTCATACTTGAAAGGTGGTTTAGCTTTGGGGTCTCTATTGGGACCAGGACGAGAGTTACTCTTTGATGGCCTAAACGCATTTAAGAAGGGGTCGCCTAATATGAACTCTCTCGTGGGATTTGGTTCTGTAGCTGCTTTCATCATTAGTTCGATCTCGCTACTTAACCCCGGCCTGGCATGGGATGCATCATTCTTTGATGAACCGGTCATGCTTCTTGGTTTCGTGCTTCTGGGACGTTCTCTGGAGGAAAAGGCAAGGATTCAGGCATCTAGCGATATGAATGAACTGCTTTCACTGATATCCACTCAGTCAAGACTTGTGATTACTTCAACAGAAGGTTCACCTTCTACTGACACTGTGCTTTGCTCTGATGCAATTTGTGTTGAAGTCCCAACTGATGATATTCGAGTAGGGGATTCTGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAACGGTCATTTCAGGAAGAAGTGTTATAGATGAATCCATGCTTACAGGGGAATCACTTCCTGTATTTAAGGAGAAAGGGCTCACAGTTTCAGCAGGAACTATAAATTGGGATGGTCCTTTAAGGATTGAAGCTTCTTCAACTGGCTCCAACACTATGATATCGAAGATTGTACGCATGGTTGAGGATGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATACAGTGTAATGACTTTGTCAGCAGCAACATTTGCATTTTGGTATTTTGTAGGATCACACATATTTCCTGATGTTTTGCTCAACGATATTGCTGGCCCAGAAGGAGATCCTTTGTTGTTGAGTTTAAAACTATCCGTAGATGTTTTGGTTGTTTCTTGTCCATGTGCACTGGGTCTTGCTACGCCCACAGCAATCTTGGTTGGCACCTCACTTGGGGCAAGAAAAGGACTTCTTATTAGGGGAGGGGATGTGCTGGAACGCTTGGCTGGAATAAATTATATTGCTCTAGACAAGACAGGAACCCTTACCAAAGGAAAACCAGTTGTGTCGGCCATAAGCTCTATCCTTTATGGAGAATCTGAAATTCTTCGGCTTGCTGCTGCAGTGGAGAAAACAGCATCTCACCCAATAGCAAAGGCTATTGTCAATAAAGCTGAGTCATTAGAGTTGGTACTTCCCGTTACAAAGGGACAGTTGGTTGAGCCAGGTTTTGGAACTTTAGCAGAAGTTGATGGGCATCTGATTGCAGTTGGGTCTTTAGAATGGGTTCATGAACGCTTCCAGACAAGAGCGAACCCATCTGATTTGACAAATCTGGAGAATAGTTTGATGAATCATTCATTGAATACAACATCTTCAAAGTATTCAAAAACTGTTGTCTATGTTGGACGTGAAGGAGAAGGCATCATTGGTGCGATTGCCATATCTGACACTGTGCGTGAAGATGCTGAATCTACTATAACAAGGCTCAAGCAGAAGGGGATTAAAACAGTCCTCTTGTCAGGAGACAGGGAAGAGGCAGTTGCAACTGTAGCAGATACAGTTGGAATTGAAAATGATTTTGTCAAAGCATCTTTGTCTCCACAACAGAAATCTGGATTTATTTCCTCTCTGAAAGCTGCTGGACATCATGTTGCAATGGTAGGTGATGGGATAAATGATGCACCCTCTTTGGCTGTGGCTGATGTTGGGATTGCTCTGCAGAATGAAGCTCAAGAGAATGCTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAAGTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAAAATTTGTGTTGGGCGGTCGCATATAATGTTGTTGCCATTCCCATTGCTGCTGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAGGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTCTACAGCTTCATGGGTCTCAGATCTCTAGAAAGGTTGGGTCAACTATAGAAATCATATCTTCCCATTCGAACACAGATATGCTTAATTTAAAATAA
>Glyma.06g056300.1.p sequence-type=predicted peptide transcript=Glyma.06g056300.1 locus=Glyma.06g056300 ID=Glyma.06g056300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MATHLFRLPLFSQPKLSFNHTPNHALHFISPLPAKRHRTRNRHRRRILRPPFSVSNSFGTEIGSPEFSLLQSRREAKDSPVLLDVTGMMCGACVSRVKNILSADDRVDSVVVNMLTETAAVKLRRIEEEPASVAESLALRLSDCGFPTKRRASSSGVTENVRKWKELVKKKEELVVKSRSRVAFAWTLVALCCGSHASHIFHSLGIHIAHGPLMEILHSSYLKGGLALGSLLGPGRELLFDGLNAFKKGSPNMNSLVGFGSVAAFIISSISLLNPGLAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSTEGSPSTDTVLCSDAICVEVPTDDIRVGDSVLVLPGETIPIDGTVISGRSVIDESMLTGESLPVFKEKGLTVSAGTINWDGPLRIEASSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVYSVMTLSAATFAFWYFVGSHIFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLAGINYIALDKTGTLTKGKPVVSAISSILYGESEILRLAAAVEKTASHPIAKAIVNKAESLELVLPVTKGQLVEPGFGTLAEVDGHLIAVGSLEWVHERFQTRANPSDLTNLENSLMNHSLNTTSSKYSKTVVYVGREGEGIIGAIAISDTVREDAESTITRLKQKGIKTVLLSGDREEAVATVADTVGIENDFVKASLSPQQKSGFISSLKAAGHHVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILLGNKISQVVDALDLAQATMGKVYQNLCWAVAYNVVAIPIAAGVLLPHFDFAMTPSLSGGLMALSSIFVVGNSLLLQLHGSQISRKVGSTIEIISSHSNTDMLNLK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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