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Report for Sequence Feature Glyma.06g055400

Feature Type:gene_model
Chromosome:Gm06
Start:4192381
stop:4196700
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g055400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G12080.1AT mechanosensitive channel of small conductance-like 10 JGI N/AIEA
GO:0006820GO-bp anion transport EnsemblGenomesN/AIEA
GO:0034220GO-bp ion transmembrane transport EnsemblGenomesN/AIEA
GO:0050982GO-bp detection of mechanical stimulus EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0008381GO-mf mechanosensitive ion channel activity EnsemblGenomesN/AIEA
KOG4629 KOG Predicted mechanosensitive ion channel JGI N/AIEA
PF00924PFAM Mechanosensitive ion channel JGI N/AIEA

Expression Patterns of Glyma.06g055400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g055400
ParalogEvidenceComments
Glyma.04g055200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g055400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g05800 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g055400
>Glyma.06g055400.2 sequence-type=transcript locus=Glyma.06g055400 ID=Glyma.06g055400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGTTTAGTAAATAAACAATACCTGCTCCGCTATTTGTTTATTACATCCATATACATATAGACATAGTCATAAAGTCTTGGTTTCTGTTTAGTCATTTTGGCCTTTCTTGGGGGCTGTGATGCAAAACCAGAGTTTCCTCTTACCGCAAATCACTCGCACACACATTTCCATCTAAAAACTCTTACTTTCAAATCAGTCTGCCTCTCTGTCCCCAAACAAAACCTTTTGCCGTTGTTTATGACTCACATCACTCACCCTTAATCCCTGTTCTTGTAAATCTATACCTGTGTTTGTGTGTGATTTTTCCAACCTTTGACAACCAACTTTATCCGCCATCCATTGTTTTCTATCTCACATAATTAGTTATAACTCCACCTGATCTGTTTCCTTTCATCTTTTTATTTATATCAGTATCAGGTTGTGAATGGATGTTATTAATAAGCAGCAAGGTGGTCTAAAATGCGGTGAAGTAACCATGGCTGAGAAGAAGAGAGAAGTGATGGTGGCGATTCCAAACGAGCAGCAGCATAGCAGGGTGAATTCGCCACACAGAATATTAAACGACAACGAGGTTGCCGGAGCAAAGTCGCCACCTTTAAACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAAGTTTTCACTTCCAACGCCAACCTCACTCGGCGAAAATCACTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAACCTTACCCCATTGATGGGACCCTTTTGGAAGATAATGCAAACTCAACTTTGCAAGAAAACTTGACTGTTGGTTCGCCATATAAAGCATCACCTAATAACAACAACAAAGCTGGGACTGTTAATAGAACATTCTCCATCCTGTCTGTGATCACTCCCAAGACACCGCTGATGGCGTCTCCCGGGCCGGCCGGGGAGGATTTCGATGAAATCATTTACAAGAAAGTTGAATTGAGTAAAAACAAGCGTAGTAGGAGACTGACTGCTAAGATGTTGTTTGAATGGTTTGTGTTTGTGTGCATTGCAAGTAGCTTGGTGGCTAGTTTAGCTGTTGGAAAACTTAAAAGGACCGAGATTTGGGGTTTGGGGTTTTGGAGGTTGTGTGTGCTTGTGATGGTGACCTTTTGCGGCATGTTGGTTACAAGATGGTTTATGCACATTGTTGTTTTCTTGATTGAGACCAACTTTTTGCTGAGGAAAAAGGTGCTGTATTTTGTCTATGGACTGAAGAAGTGTGTCCAGTTCTTCATTTGGCTTGGTTTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGCGGGGTCCACCGAACTGAACTGGCCTCAAAGATTTTGAATGGGGTAACATGGACTCTTGTTTCCCTCCTCATTGGAGCATTCCTGTGGTTCGTGAAGACATTGTTGTTAAAGATCTTGGCATCGAATTTCCATGTCAAGTCTTTCTTTGATCGAATTCAAGAATCGCTCTTCCATCAGTACATTCTGCAGACTCTCTCTGGACCTCCACTTGTAGAAGAGGCTGAGAAGGTTGGGGCATCGTACAGTGTTGGTCATTTTAGTTTTAGGAGTACAGATGGTAAAGGTGGCACAAAGAAAGAGACTATTGATATCGCAAAGCTTCACCAGATGAAACAAGAGAAAGTTTCTGCGTGGACTATGAAGGTTTTGGTAGATGCAATGACAACTTCAGGGCTGTCCACAATCTCTAGTGCACTAGATGAAAGTTTCGATGAAGGAGAAAATGAACAAACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACATTTTCAGGAATGTGGCTGCCCCTGGTTGCACGTACATTGATGAGGATGAACTTCGGAGGTTCATGATTAAGGAAGAAGTGCGAATGGTATATCCCCTATTGGCTGAAGCAGAAACGGGGCAAATTACTAGAAAGTCCTTAACAGACTGGTTGTTGAAGGTTTATCAAGAACGCAGAGCATTAGCACATGCCTTAAGTGACACTAAAACAGCTGTAAAACAACTAAACAAACTCGTGACCGTACTCCTAGTAGTGGTGAACATAATCGTGTGGCTTCTACTGATGGAGATTGCAACAACAAAAGTACTTGTATTCCTCTCATCACAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACATGCAAGAACATATTTGAAGCTATCATCTTTGTGTTTGTAATGCATCCATTTGATGTTGGTGATCGGTGTGTTATTGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGCTTAATAATGAAAAGGTGTACTATCCAAACTCTGTCCTGGCCACAAAACCAATTAGCAATTATTACAGAAGCCCAGATATGGGTGACCGCGTAGATTTCTCCATTGATTTTATGACACCAGCAGAGAAGATTGGGGCACTGAAAGAAAAAATAAAAAGGTACGTGGAGAGAAATCCACAATACTGGCACTCCAATCATGGCTTAGTAGTGAAGGAGATTGAAGATGTAAACAAGATTAAGATGGCTCTCAATGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAACCAAGCGAAGAACTGAATTGGTGATGGAAGTAAAGAAAATGTTTGAAGAGCTCAATATCAGATACAACCTTCTTCCTCAAGGCATTCATCTCAGACATATTGAACCAAACTCGAGTGTGCTCAATACATGATTCAGCTGCATGCATGTGTGTCTCCTATGTTTCATTTCATCTGTCAAATACCACCAGACCTTTTCTTTGGTTGATTTAATTCATGATAGTTGTGAGTGGTGCTTTAGTAAAGtatatatatatatatatatatatataGGGCCTTAATTAACAGACAGTATTAACAAATGTTTTTTCCCTAGATATGATAATGAAATTATGAATTCAGGACTCTTATTCTTGACTATACGAACCTTCAAGTGGATCCAATGTAAAAGTAAAATTTTGTCCCACAATTGAACTCCTTCCTGTGTCTGGTTATAATTCTGATGCCTGTTGAATGGAGGTT
Coding sequences of Glyma.06g055400
>Glyma.06g055400.1 sequence-type=CDS polypeptide=Glyma.06g055400.1.p locus=Glyma.06g055400 ID=Glyma.06g055400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGTTATTAATAAGCAGCAAGGTGGTCTAAAATGCGGTGAAGTAACCATGGCTGAGAAGAAGAGAGAAGTGATGGTGGCGATTCCAAACGAGCAGCAGCATAGCAGGGTGAATTCGCCACACAGAATATTAAACGACAACGAGGTTGCCGGAGCAAAGTCGCCACCTTTAAACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAAGTTTTCACTTCCAACGCCAACCTCACTCGGCGAAAATCACTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAACCTTACCCCATTGATGGGACCCTTTTGGAAGATAATGCAAACTCAACTTTGCAAGAAAACTTGACTGTTGGTTCGCCATATAAAGCATCACCTAATAACAACAACAAAGCTGGGACTGTTAATAGAACATTCTCCATCCTGTCTGTGATCACTCCCAAGACACCGCTGATGGCGTCTCCCGGGCCGGCCGGGGAGGATTTCGATGAAATCATTTACAAGAAAGTTGAATTGAGTAAAAACAAGCGTAGTAGGAGACTGACTGCTAAGATGTTGTTTGAATGGTTTGTGTTTGTGTGCATTGCAAGTAGCTTGGTGGCTAGTTTAGCTGTTGGAAAACTTAAAAGGACCGAGATTTGGGGTTTGGGGTTTTGGAGGTTGTGTGTGCTTGTGATGGTGACCTTTTGCGGCATGTTGGTTACAAGATGGTTTATGCACATTGTTGTTTTCTTGATTGAGACCAACTTTTTGCTGAGGAAAAAGGTGCTGTATTTTGTCTATGGACTGAAGAAGTGTGTCCAGTTCTTCATTTGGCTTGGTTTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGCGGGGTCCACCGAACTGAACTGGCCTCAAAGATTTTGAATGGGGTAACATGGACTCTTGTTTCCCTCCTCATTGGAGCATTCCTGTGGTTCGTGAAGACATTGTTGTTAAAGATCTTGGCATCGAATTTCCATGTCAAGTCTTTCTTTGATCGAATTCAAGAATCGCTCTTCCATCAGTACATTCTGCAGACTCTCTCTGGACCTCCACTTGTAGAAGAGGCTGAGAAGGTTGGGGCATCGTACAGTGTTGGTCATTTTAGTTTTAGGAGTACAGATGGTAAAGGTGGCACAAAGAAAGAGACTATTGATATCGCAAAGCTTCACCAGATGAAACAAGAGAAAGTTTCTGCGTGGACTATGAAGGTTTTGGTAGATGCAATGACAACTTCAGGGCTGTCCACAATCTCTAGTGCACTAGATGAAAGTTTCGATGAAGGAGAAAATGAACAAACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACATTTTCAGGAATGTGGCTGCCCCTGGTTGCACGTACATTGATGAGGATGAACTTCGGAGGTTCATGATTAAGGAAGAAGTGCGAATGGTATATCCCCTATTGGCTGAAGCAGAAACGGGGCAAATTACTAGAAAGTCCTTAACAGACTGGTTGTTGAAGGTTTATCAAGAACGCAGAGCATTAGCACATGCCTTAAGTGACACTAAAACAGCTGTAAAACAACTAAACAAACTCGTGACCGTACTCCTAGTAGTGGTGAACATAATCGTGTGGCTTCTACTGATGGAGATTGCAACAACAAAAGTACTTGTATTCCTCTCATCACAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACATGCAAGAACATATTTGAAGCTATCATCTTTGTGTTTGTAATGCATCCATTTGATGTTGGTGATCGGTGTGTTATTGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGCTTAATAATGAAAAGGTGTACTATCCAAACTCTGTCCTGGCCACAAAACCAATTAGCAATTATTACAGAAGCCCAGATATGGGTGACCGCGTAGATTTCTCCATTGATTTTATGACACCAGCAGAGAAGATTGGGGCACTGAAAGAAAAAATAAAAAGGTACGTGGAGAGAAATCCACAATACTGGCACTCCAATCATGGCTTAGTAGTGAAGGAGATTGAAGATGTAAACAAGATTAAGATGGCTCTCAATGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAACCAAGCGAAGAACTGAATTGGTGATGGAAGTAAAGAAAATGTTTGAAGAGCTCAATATCAGATACAACCTTCTTCCTCAAGGCATTCATCTCAGACATATTGAACCAAACTCGAGTGTGCTCAATACATGA

>Glyma.06g055400.2 sequence-type=CDS polypeptide=Glyma.06g055400.2.p locus=Glyma.06g055400 ID=Glyma.06g055400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGTTATTAATAAGCAGCAAGGTGGTCTAAAATGCGGTGAAGTAACCATGGCTGAGAAGAAGAGAGAAGTGATGGTGGCGATTCCAAACGAGCAGCAGCATAGCAGGGTGAATTCGCCACACAGAATATTAAACGACAACGAGGTTGCCGGAGCAAAGTCGCCACCTTTAAACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAAGTTTTCACTTCCAACGCCAACCTCACTCGGCGAAAATCACTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAACCTTACCCCATTGATGGGACCCTTTTGGAAGATAATGCAAACTCAACTTTGCAAGAAAACTTGACTGTTGGTTCGCCATATAAAGCATCACCTAATAACAACAACAAAGCTGGGACTGTTAATAGAACATTCTCCATCCTGTCTGTGATCACTCCCAAGACACCGCTGATGGCGTCTCCCGGGCCGGCCGGGGAGGATTTCGATGAAATCATTTACAAGAAAGTTGAATTGAGTAAAAACAAGCGTAGTAGGAGACTGACTGCTAAGATGTTGTTTGAATGGTTTGTGTTTGTGTGCATTGCAAGTAGCTTGGTGGCTAGTTTAGCTGTTGGAAAACTTAAAAGGACCGAGATTTGGGGTTTGGGGTTTTGGAGGTTGTGTGTGCTTGTGATGGTGACCTTTTGCGGCATGTTGGTTACAAGATGGTTTATGCACATTGTTGTTTTCTTGATTGAGACCAACTTTTTGCTGAGGAAAAAGGTGCTGTATTTTGTCTATGGACTGAAGAAGTGTGTCCAGTTCTTCATTTGGCTTGGTTTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGCGGGGTCCACCGAACTGAACTGGCCTCAAAGATTTTGAATGGGGTAACATGGACTCTTGTTTCCCTCCTCATTGGAGCATTCCTGTGGTTCGTGAAGACATTGTTGTTAAAGATCTTGGCATCGAATTTCCATGTCAAGTCTTTCTTTGATCGAATTCAAGAATCGCTCTTCCATCAGTACATTCTGCAGACTCTCTCTGGACCTCCACTTGTAGAAGAGGCTGAGAAGGTTGGGGCATCGTACAGTGTTGGTCATTTTAGTTTTAGGAGTACAGATGGTAAAGGTGGCACAAAGAAAGAGACTATTGATATCGCAAAGCTTCACCAGATGAAACAAGAGAAAGTTTCTGCGTGGACTATGAAGGTTTTGGTAGATGCAATGACAACTTCAGGGCTGTCCACAATCTCTAGTGCACTAGATGAAAGTTTCGATGAAGGAGAAAATGAACAAACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACATTTTCAGGAATGTGGCTGCCCCTGGTTGCACGTACATTGATGAGGATGAACTTCGGAGGTTCATGATTAAGGAAGAAGTGCGAATGGTATATCCCCTATTGGCTGAAGCAGAAACGGGGCAAATTACTAGAAAGTCCTTAACAGACTGGTTGTTGAAGGTTTATCAAGAACGCAGAGCATTAGCACATGCCTTAAGTGACACTAAAACAGCTGTAAAACAACTAAACAAACTCGTGACCGTACTCCTAGTAGTGGTGAACATAATCGTGTGGCTTCTACTGATGGAGATTGCAACAACAAAAGTACTTGTATTCCTCTCATCACAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACATGCAAGAACATATTTGAAGCTATCATCTTTGTGTTTGTAATGCATCCATTTGATGTTGGTGATCGGTGTGTTATTGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGCTTAATAATGAAAAGGTGTACTATCCAAACTCTGTCCTGGCCACAAAACCAATTAGCAATTATTACAGAAGCCCAGATATGGGTGACCGCGTAGATTTCTCCATTGATTTTATGACACCAGCAGAGAAGATTGGGGCACTGAAAGAAAAAATAAAAAGGTACGTGGAGAGAAATCCACAATACTGGCACTCCAATCATGGCTTAGTAGTGAAGGAGATTGAAGATGTAAACAAGATTAAGATGGCTCTCAATGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAACCAAGCGAAGAACTGAATTGGTGATGGAAGTAAAGAAAATGTTTGAAGAGCTCAATATCAGATACAACCTTCTTCCTCAAGGCATTCATCTCAGACATATTGAACCAAACTCGAGTGTGCTCAATACATGA
Predicted protein sequences of Glyma.06g055400
>Glyma.06g055400.1.p sequence-type=predicted peptide transcript=Glyma.06g055400.1 locus=Glyma.06g055400 ID=Glyma.06g055400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDVINKQQGGLKCGEVTMAEKKREVMVAIPNEQQHSRVNSPHRILNDNEVAGAKSPPLNCASPEIRFMPSPNKPPKVFTSNANLTRRKSLTRSVYSKPKSRFGEQPYPIDGTLLEDNANSTLQENLTVGSPYKASPNNNNKAGTVNRTFSILSVITPKTPLMASPGPAGEDFDEIIYKKVELSKNKRSRRLTAKMLFEWFVFVCIASSLVASLAVGKLKRTEIWGLGFWRLCVLVMVTFCGMLVTRWFMHIVVFLIETNFLLRKKVLYFVYGLKKCVQFFIWLGLVLLTWVLLINRGVHRTELASKILNGVTWTLVSLLIGAFLWFVKTLLLKILASNFHVKSFFDRIQESLFHQYILQTLSGPPLVEEAEKVGASYSVGHFSFRSTDGKGGTKKETIDIAKLHQMKQEKVSAWTMKVLVDAMTTSGLSTISSALDESFDEGENEQTDKEITNEMEATAAAYYIFRNVAAPGCTYIDEDELRRFMIKEEVRMVYPLLAEAETGQITRKSLTDWLLKVYQERRALAHALSDTKTAVKQLNKLVTVLLVVVNIIVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLATKPISNYYRSPDMGDRVDFSIDFMTPAEKIGALKEKIKRYVERNPQYWHSNHGLVVKEIEDVNKIKMALNVTHTMNFQEFGEKTKRRTELVMEVKKMFEELNIRYNLLPQGIHLRHIEPNSSVLNT*

>Glyma.06g055400.2.p sequence-type=predicted peptide transcript=Glyma.06g055400.2 locus=Glyma.06g055400 ID=Glyma.06g055400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDVINKQQGGLKCGEVTMAEKKREVMVAIPNEQQHSRVNSPHRILNDNEVAGAKSPPLNCASPEIRFMPSPNKPPKVFTSNANLTRRKSLTRSVYSKPKSRFGEQPYPIDGTLLEDNANSTLQENLTVGSPYKASPNNNNKAGTVNRTFSILSVITPKTPLMASPGPAGEDFDEIIYKKVELSKNKRSRRLTAKMLFEWFVFVCIASSLVASLAVGKLKRTEIWGLGFWRLCVLVMVTFCGMLVTRWFMHIVVFLIETNFLLRKKVLYFVYGLKKCVQFFIWLGLVLLTWVLLINRGVHRTELASKILNGVTWTLVSLLIGAFLWFVKTLLLKILASNFHVKSFFDRIQESLFHQYILQTLSGPPLVEEAEKVGASYSVGHFSFRSTDGKGGTKKETIDIAKLHQMKQEKVSAWTMKVLVDAMTTSGLSTISSALDESFDEGENEQTDKEITNEMEATAAAYYIFRNVAAPGCTYIDEDELRRFMIKEEVRMVYPLLAEAETGQITRKSLTDWLLKVYQERRALAHALSDTKTAVKQLNKLVTVLLVVVNIIVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLATKPISNYYRSPDMGDRVDFSIDFMTPAEKIGALKEKIKRYVERNPQYWHSNHGLVVKEIEDVNKIKMALNVTHTMNFQEFGEKTKRRTELVMEVKKMFEELNIRYNLLPQGIHLRHIEPNSSVLNT*






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