|
A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G12040.1 | AT | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein | JGI | N/A | IEA |
GO:0006807 | GO-bp | nitrogen compound metabolic process | EnsemblGenomes | N/A | IEA |
GO:0006807 | GO-bp | nitrogen compound metabolic process | JGI | N/A | IEA |
GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
GO:0016746 | GO-mf | transferase activity, transferring acyl groups | EnsemblGenomes | N/A | IEA |
GO:0016810 | GO-mf | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | EnsemblGenomes | N/A | IEA |
GO:0016810 | GO-mf | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | JGI | N/A | IEA |
KOG0806 | KOG | Carbon-nitrogen hydrolase | JGI | N/A | IEA |
PTHR23088 | Panther | NITRILASE-RELATED | JGI | N/A | IEA |
PF00795 | PFAM | Carbon-nitrogen hydrolase | JGI | N/A | IEA |
GN7V-47652 | SoyCyc9-rxn | ω-amidase | Plant Metabolic Network | ISS |
Glyma.06g055100 not represented in the dataset |
Glyma.06g055100 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.04g055000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Glyma.20g016600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma06g05770 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g055100.1 sequence-type=CDS polypeptide=Glyma.06g055100.1.p locus=Glyma.06g055100 ID=Glyma.06g055100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAAGCATCCGCACTGCTTAACTTGAAATCTTTCACTCTCAGCCGCCATTCTCCCACTTCCAACTCCTTCTTCCCCCCCTTTCTTTGTCCATCCCACCCCCGCCACCGCCGAATCCACCACTCTCGAAATCCAATCATGTCTGCCACATCCGTCAACTCCGAACGAGCACGCGCCCCTCCCGCCATTCCCTTGCCCCCTCCCCCTCTCTCCAACTTCAAAATTGGCCTCTGTCAACTCTCCGTCAGCCCCGACAAAGACAGCAACATCGCCCACGCTCGCACCGCCATTCAGGATGCTGCATCAAAGGGCGCCCAGCTTGTTCTTTTGCCCGAAATTTGGAACAGTCCTTATTCCAACGATAGTTTTCCTGTCTACGCTGAGGATATTGACGCTGGTGCTTCTCCTTCCACTGCCATGCTATCTGAACTCTCTCGTCTCTTGAAAATCACCATAGTTGGTGGTTCCATTCCAGAACGCTCTGGAGGTCTCTTGTACAACACTTGCTGCGTCTTTGGCACCGACGGAAACCTACTAGCCAAGCACCGCAAGATACATCTTTTTGATATTGACATCCCTGGGAAGATTACTTTTATTGAATCAAAAACTCTTACTGCTGGGGAGACTCCGACAATTGTGGACACAGAGGTTGGACGCATTGGCATAGGCATCTGTTATGACATTCGATTTCCAGAACTAGCAATGATATATGCTGCTAGAGGTGCTCACTTACTCTGCTACCCTGGGGCATTTAACATGACAACTGGACCATTACATTGGGAGTTATTGCAGAGGGCAAGGGCTACAGATAATCAGTTATATGTGGCTACCTGTTCACCTGCCCGGGATACTGGATCTGGTTATGTGGCTTGGGGCCACTCCACTCTTGTTGGACCATTTGGAGAAGTTCTGGCTACTACAGAACATGAGGAGGCAATCATCATAGCAGAAATTGATTATTCAATATTGGAGCAGAGAAGGACAAATCTGCCTGTAACTAAGCAAAGGCGAGGTGATCTTTACCAGTTGGTGGATTTTCAGAGGCTGAATTCTCAGTGA
>Glyma.06g055100.1.p sequence-type=predicted peptide transcript=Glyma.06g055100.1 locus=Glyma.06g055100 ID=Glyma.06g055100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKASALLNLKSFTLSRHSPTSNSFFPPFLCPSHPRHRRIHHSRNPIMSATSVNSERARAPPAIPLPPPPLSNFKIGLCQLSVSPDKDSNIAHARTAIQDAASKGAQLVLLPEIWNSPYSNDSFPVYAEDIDAGASPSTAMLSELSRLLKITIVGGSIPERSGGLLYNTCCVFGTDGNLLAKHRKIHLFDIDIPGKITFIESKTLTAGETPTIVDTEVGRIGIGICYDIRFPELAMIYAARGAHLLCYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDTGSGYVAWGHSTLVGPFGEVLATTEHEEAIIIAEIDYSILEQRRTNLPVTKQRRGDLYQLVDFQRLNSQ*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||