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Report for Sequence Feature Glyma.06g054800

Feature Type:gene_model
Chromosome:Gm06
Start:4140373
stop:4142040
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g054800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G72820.1AT Mitochondrial substrate carrier family protein JGI N/AIEA
GO:0006839GO-bp mitochondrial transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0005743GO-cc mitochondrial inner membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0031307GO-cc integral component of mitochondrial outer membrane EnsemblGenomesN/AIEA
GO:0022857GO-mf transmembrane transporter activity EnsemblGenomesN/AIEA
KOG0765 KOG Predicted mitochondrial carrier protein JGI N/AIEA
PTHR24089Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24089:SF94Panther JGI N/AIEA
PF00153PFAM Mitochondrial carrier protein JGI N/AIEA

Expression Patterns of Glyma.06g054800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g054800
ParalogEvidenceComments
Glyma.04g054600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Glyma.20g016000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g054800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g05750 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g054800
>Glyma.06g054800.1 sequence-type=CDS polypeptide=Glyma.06g054800.1.p locus=Glyma.06g054800 ID=Glyma.06g054800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTTTGGGAACCGCGGAGGACGAATCCGGTTCCGAAATCCACATCCCAGCCGAAATCGACTGGCACATGCTGGACAAATCCAAGTTCTTCTTCCTCGGCGCCGCCTTATTCTCCGGCGTGTCGTGCGCACTCTACCCCATGGTCGTGTTGAAGACGCGTCAGCAAGTTTCCTCCTCACGCTTCTCCTGCCTCAACATCTCCTGCGCCATTCTCCGCCACGAGGGCCTCCGCGGCTTCTACAAGGGCTTCGGAACCTCCCTCATGGGAACCATCCCCGCACGTGCGCTCTACATGGCCTCCCTCGAGATCACCAAAAGCAACGTCGCCACCGCCTTCCTCCAATTCGGCTTCTCCGAGACCACCGCCGTGGCTGTGGCCAACGCCGCCGCGGGCGTCACCTCCGCCATGGCTGCCCAGCTCGTGTGGACCCCAATTGATGTCGTGAGTCAGCGGCTCATGGTTCAGGGGAGTGGCGGGAGTAAAACCACAGTGCTCGCGAATCTCAATTCGGAAAATTACAGAAATGGGTTTGATGCTTTTAGGAAAATTATGTGTGCTGATGGAGCGATAGGCTTTTATAGAGGCTTTGGGATTTCTATATTGACTTATGCGCCTTCCAATGCGGTTTGGTGGACTTCTTATTCCATGGTTCATAGACTCATTTGGGGTGCTTTTGGTTCTTACATGGGAAATAACAATGGTAGAAAGGGAAATGAAAAGAATGATAGTAATAAGTATAGCAGGCCTGATTCGAAGGCAATGGTGGCGGTTCAAGGGTTGAGTGCTGTTATGGCAAGTGGGGTATCTGCGATTGTGACAATGCCGCTTGATACGATAAAGACGAGGTTGCAGGTGTTGGATCTTGAAGAGGGGAATGGGAGAAGGAGGCCTTTGACTTTTGTTCAGACGGTGAGGAATTTGGTGAAGGAAGGTGGGTTGCTTGCTTGTTACAGAGGATTGGGTCCGAGATGGGCTTCCATGTCCATGTCTGCCACAACTATGATTACTACTTATGAGTTTTTGAAAAGAATGTCTACCAAGAATCAAGAGGATTTGACTCCATCATAG
Predicted protein sequences of Glyma.06g054800
>Glyma.06g054800.1.p sequence-type=predicted peptide transcript=Glyma.06g054800.1 locus=Glyma.06g054800 ID=Glyma.06g054800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLGTAEDESGSEIHIPAEIDWHMLDKSKFFFLGAALFSGVSCALYPMVVLKTRQQVSSSRFSCLNISCAILRHEGLRGFYKGFGTSLMGTIPARALYMASLEITKSNVATAFLQFGFSETTAVAVANAAAGVTSAMAAQLVWTPIDVVSQRLMVQGSGGSKTTVLANLNSENYRNGFDAFRKIMCADGAIGFYRGFGISILTYAPSNAVWWTSYSMVHRLIWGAFGSYMGNNNGRKGNEKNDSNKYSRPDSKAMVAVQGLSAVMASGVSAIVTMPLDTIKTRLQVLDLEEGNGRRRPLTFVQTVRNLVKEGGLLACYRGLGPRWASMSMSATTMITTYEFLKRMSTKNQEDLTPS*






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